BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00014318
         (454 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   199   4e-49
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...   184   8e-45
gb|EXB89104.1| hypothetical protein L484_016664 [Morus notabilis]     132   5e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   130   2e-28
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]   124   1e-26
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   116   3e-24
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              116   3e-24
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              116   3e-24
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   115   5e-24
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              115   6e-24
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              113   2e-23
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     113   2e-23
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        112   4e-23
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               112   5e-23
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                112   5e-23
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   112   7e-23
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   112   7e-23
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   111   9e-23
gb|AFB73912.1| polyprotein [Citrus sinensis]                          111   9e-23
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   110   2e-22

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  199 bits (505), Expect = 4e-49
 Identities = 94/129 (72%), Positives = 107/129 (82%), Gaps = 3/129 (2%)
 Frame = -3

Query: 380 KDECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGES--EDEFSLVVSPLISRS-DEWIL 210
           KDECAFCHEKGHWKKDCPKL+ K K  QDA VAE +S  E + SL+VS   S   DEWIL
Sbjct: 168 KDECAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDVESDISLIVSLSASLYLDEWIL 227

Query: 209 DSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYV 30
           DSGCTYHM P+++WFF F+E++GGVVYMGNDN CKT GIGSI+L+NHDGSTR+L DVRYV
Sbjct: 228 DSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYV 287

Query: 29  PNLKKNLIS 3
           P LKKNLIS
Sbjct: 288 PKLKKNLIS 296


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score =  184 bits (468), Expect = 8e-45
 Identities = 85/118 (72%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
 Frame = -3

Query: 380 KDECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGES--EDEFSLVVS-PLISRSDEWIL 210
           KDECAFCHEKGHWKKDCPKL+ K K PQDA VAE +S  E + SL+VS    S  DEWIL
Sbjct: 207 KDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLSASSYPDEWIL 266

Query: 209 DSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVR 36
           DSGCTYHM P+++WFF F+E++GGVVYMGNDN CKT GIGSI+L+NHDGSTR+L DVR
Sbjct: 267 DSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTAGIGSIKLRNHDGSTRILRDVR 324


>gb|EXB89104.1| hypothetical protein L484_016664 [Morus notabilis]
          Length = 718

 Score =  132 bits (332), Expect = 5e-29
 Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
 Frame = -3

Query: 389 KLDKDE-CAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGESEDEFSLVVSPLISRSDEWI 213
           K+  DE CA  +    WKKD  + K+   A  +      + E EF L+ +   S+ DEWI
Sbjct: 27  KITFDEVCAALYNNEIWKKDQKEHKSTSAAKYE------DDESEFVLISTLSKSQYDEWI 80

Query: 212 LDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRY 33
           +DSGCTYHM   KEWFFNFEE+N GVV +G ++A ++TGIGSI LK HDGST+VLTDVRY
Sbjct: 81  MDSGCTYHMCSNKEWFFNFEELNEGVVNIGTNDALQSTGIGSIHLKCHDGSTKVLTDVRY 140

Query: 32  VPNLKKNLI 6
           VP+LKKN I
Sbjct: 141 VPHLKKNHI 149


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  130 bits (327), Expect = 2e-28
 Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
 Frame = -3

Query: 377 DECAFCHEKGHWKKDCPKLKNKG-KAPQDACVAEGE--SEDEFSLVVSPLISRSDEWILD 207
           D C +C EKGHWK DCPK K +  K    A VAE +  SE++ +LV       SD W+LD
Sbjct: 223 DVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLD 282

Query: 206 SGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVP 27
           SG +YH+ P +EWF  +E+++GG + M N + CK  G GSI+++ HDGS   L +VR+VP
Sbjct: 283 SGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVP 342

Query: 26  NLKKNLIS 3
            + KNLIS
Sbjct: 343 LMTKNLIS 350


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 8/138 (5%)
 Frame = -3

Query: 392 AKLDKDECAFCHEKGHWKKDCPKLK--------NKGKAPQDACVAEGESEDEFSLVVSPL 237
           +K  K +C  CH++GH+KKDCP ++        N+G A     + +G   D   ++    
Sbjct: 221 SKTKKFKCFICHKEGHFKKDCPDMRQNTXKKTMNEGDATM---ILDGY--DNAGVLNVAE 275

Query: 236 ISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGST 57
           +    EWILDSGC++HM P+K WF +F+E NGG V +GN+  CK  G G++++K++DG  
Sbjct: 276 VDSGKEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTGTVKIKHYDGIE 335

Query: 56  RVLTDVRYVPNLKKNLIS 3
           RVL D+RY+P LK NLIS
Sbjct: 336 RVLEDIRYIPELKMNLIS 353


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  116 bits (291), Expect = 3e-24
 Identities = 55/136 (40%), Positives = 81/136 (59%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLIS 231
           C +C   GH   DC KL+NK          GK  +    A   + + + E  +  +  + 
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQ 237

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SDEW+LD+GCTYHM P ++WF  +E + GG V MG++  CK  G+G+I++K  DG  R 
Sbjct: 238 TSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRT 297

Query: 50  LTDVRYVPNLKKNLIS 3
           L+DVR++P+LK+NLIS
Sbjct: 298 LSDVRHIPSLKRNLIS 313


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  116 bits (291), Expect = 3e-24
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 225
           +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 224 DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 45
           D WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289 DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 44  DVRYVPNLKKNLIS 3
            VR+V  LKKNL+S
Sbjct: 349 GVRHVKGLKKNLLS 362


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  116 bits (291), Expect = 3e-24
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 225
           +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 224 DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 45
           D WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289 DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 44  DVRYVPNLKKNLIS 3
            VR+V  LKKNL+S
Sbjct: 349 GVRHVKGLKKNLLS 362


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  115 bits (289), Expect = 5e-24
 Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 8/134 (5%)
 Frame = -3

Query: 380 KDECAFCHEKGHWKKDCP--------KLKNKGKAPQDACVAEGESEDEFSLVVSPLISRS 225
           K +C  CH++GH+KKDC         K  N+G A   A + +G    +   V    +   
Sbjct: 268 KFKCFICHKEGHFKKDCSDKRQNTIKKTVNEGDA---AVILDGYDSAKVLNVAE--MDSG 322

Query: 224 DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 45
            EWILDSGC++HM P+K WF +F+E NGG V +GN+  CK  G   +R+K++DG  RVL 
Sbjct: 323 KEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTSIVRIKHYDGIERVLE 382

Query: 44  DVRYVPNLKKNLIS 3
            VRY+P LK+NLIS
Sbjct: 383 VVRYIPELKRNLIS 396


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  115 bits (288), Expect = 6e-24
 Identities = 56/134 (41%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 225
           +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229 KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 224 DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 45
           D WI+DSG T+HM+P ++WF+++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 44  DVRYVPNLKKNLIS 3
            VR+V  LKKNL+S
Sbjct: 349 GVRHVKGLKKNLLS 362


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  113 bits (283), Expect = 2e-23
 Identities = 56/134 (41%), Positives = 84/134 (62%), Gaps = 10/134 (7%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 225
           +C  C  KGH KK+C   K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229 KCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLN 288

Query: 224 DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 45
           D WI+DSG T+HM+P ++WF+++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 44  DVRYVPNLKKNLIS 3
            VR+V  LKKNL+S
Sbjct: 349 GVRHVKGLKKNLLS 362


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  113 bits (283), Expect = 2e-23
 Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNKGKAPQD-------------ACVAEGESEDEFSLVVSPLIS 231
           C +C   GH   +C KL++K K  +              A V + +S+ E  +  +    
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 204

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R 
Sbjct: 205 TSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 264

Query: 50  LTDVRYVPNLKKNLIS 3
           L DVR++PNLK++LIS
Sbjct: 265 LLDVRHIPNLKRSLIS 280


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  112 bits (281), Expect = 4e-23
 Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLIS 231
           C +C   GH    C KL++K          GK  ++   A V + +S+ E  +  +    
Sbjct: 236 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R 
Sbjct: 296 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 355

Query: 50  LTDVRYVPNLKKNLIS 3
           L+DVR++PNLK++LIS
Sbjct: 356 LSDVRHIPNLKRSLIS 371


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  112 bits (280), Expect = 5e-23
 Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNKGKAP-------------QDACVAEGESEDEFSLVVSPLIS 231
           C +C   GH    C KL++K K               + A V + +S+ E  +  +    
Sbjct: 53  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 112

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R 
Sbjct: 113 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 172

Query: 50  LTDVRYVPNLKKNLIS 3
           L+DVR++PNLK++LIS
Sbjct: 173 LSDVRHIPNLKRSLIS 188


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  112 bits (280), Expect = 5e-23
 Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNKGKAP-------------QDACVAEGESEDEFSLVVSPLIS 231
           C +C   GH    C KL++K K               + A V + +S+ E  +  +    
Sbjct: 221 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 280

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R 
Sbjct: 281 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 340

Query: 50  LTDVRYVPNLKKNLIS 3
           L+DVR++PNLK++LIS
Sbjct: 341 LSDVRHIPNLKRSLIS 356


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  112 bits (279), Expect = 7e-23
 Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDCPKLKNKGKAP-QDACVAEGESEDEFSLVVSPLISRSDEWILDSGC 198
           +C  C++ G  ++ CP  + + K   Q +     +  D   ++   L    +EW+LDSGC
Sbjct: 125 KCYHCNKIGQIRRICPDRQQEEKTQAQGSAAIIDDGYDSTEVLTIRLNPNHEEWVLDSGC 184

Query: 197 TYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLK 18
           TYHM P ++WF +++E+NGG + +GN+ +C   GIG++ +  HDG TR L +VR+VP+LK
Sbjct: 185 TYHMCPRRDWFSSYQEVNGGKLLLGNNMSCNVVGIGTMAINMHDGKTRTLKEVRHVPDLK 244

Query: 17  KNLIS 3
           +NLIS
Sbjct: 245 RNLIS 249


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  112 bits (279), Expect = 7e-23
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 17/143 (11%)
 Frame = -3

Query: 380 KDECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGESE-----------------DEFSL 252
           K  C  C ++GH+KK C K   + K+ Q      GES                  DE +L
Sbjct: 218 KRVCWICGKEGHFKKQCYKWIERNKSKQQGS-DNGESSLAKSTEAFNPAMVLLATDE-TL 275

Query: 251 VVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKN 72
           VV+  I+  +EW+LD+GC++HM+P K+WF +F+E++ G V MGND      GIGSI+++N
Sbjct: 276 VVTDSIA--NEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRN 333

Query: 71  HDGSTRVLTDVRYVPNLKKNLIS 3
            DGS  +LTDVRY+PN+ +NLIS
Sbjct: 334 SDGSQVILTDVRYMPNMTRNLIS 356


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  111 bits (278), Expect = 9e-23
 Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 13/136 (9%)
 Frame = -3

Query: 371 CAFCHEKGHWKKDCPKLKNKGKAPQD-------------ACVAEGESEDEFSLVVSPLIS 231
           C +C   GH   +C KL++K K  +              A V + +S+ E  +  +    
Sbjct: 178 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQ 237

Query: 230 RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 51
            SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG +++K  DG  R 
Sbjct: 238 TSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRT 297

Query: 50  LTDVRYVPNLKKNLIS 3
           L+DVR+ PNLK++LIS
Sbjct: 298 LSDVRHFPNLKRSLIS 313


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  111 bits (278), Expect = 9e-23
 Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 11/135 (8%)
 Frame = -3

Query: 374 ECAFCHEKGHWKKDC--PKLKNKGKAPQDA----CVAEGESEDEFSLVVSPLISR----- 228
           +C  C +KGH KK+C   + + +GK P+ +    CVA    + E     + ++S      
Sbjct: 229 KCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRKRL 288

Query: 227 SDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 48
           SD W++DSG T+HM+  +EWF  +E I+GG VYMGND+A +  GIG+I++K  DG+ R +
Sbjct: 289 SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 47  TDVRYVPNLKKNLIS 3
            +VR+V  LKKNL+S
Sbjct: 349 EEVRHVNGLKKNLLS 363


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  110 bits (274), Expect = 2e-22
 Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
 Frame = -3

Query: 380 KDECAFCHEKGHWKKDCPKLKNKGKAPQDACV-----AEGESEDEFSLVVSPLISRSDEW 216
           K  C +C +K H+ ++C KL+NK K   D        AE     +  +V +  ++  DEW
Sbjct: 233 KKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEW 292

Query: 215 ILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 39
           ILD+ C++H+   ++WF +++ + NG VV MG+DN  +  GIGS+++K HDG TR L DV
Sbjct: 293 ILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352

Query: 38  RYVPNLKKNLIS 3
           R++P + +NLIS
Sbjct: 353 RHIPGMARNLIS 364