BLASTX nr result
ID: Rehmannia24_contig00013890
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00013890
(367 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise... 89 5e-16
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 75 7e-12
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 74 2e-11
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum... 71 2e-10
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu... 70 3e-10
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub... 68 1e-09
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 68 1e-09
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian... 67 2e-09
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n... 67 2e-09
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a... 67 2e-09
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 67 2e-09
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 67 2e-09
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe... 66 4e-09
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 65 7e-09
ref|XP_002885593.1| hypothetical protein ARALYDRAFT_898915 [Arab... 65 9e-09
ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutr... 64 2e-08
ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Caps... 64 2e-08
sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymeras... 63 4e-08
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi... 62 6e-08
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub... 61 2e-07
>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
Length = 1205
Score = 89.4 bits (220), Expect = 5e-16
Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = -2
Query: 237 EEAGPS-SKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFF 61
++ GPS SK+K NG+T M+I D++ +AMQ LDEG +K FCRKAATSFF
Sbjct: 2 DDVGPSTSKDKLFNGNTFMDIDEDIDFDLSDSDDDIDNAMQDLDEGVVKSFCRKAATSFF 61
Query: 60 EKYGLISHQINSYNDFVKHG 1
E++GLISHQ+NSYN+F+ HG
Sbjct: 62 EQHGLISHQLNSYNNFINHG 81
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 75.5 bits (184), Expect = 7e-12
Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Frame = -2
Query: 246 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 103
D +EE G SS KEK +NGST+M+ + ++ L E
Sbjct: 5 DIMEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGES 64
Query: 102 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
+LK FC+KA+T FFEKYGLISHQINSYNDF+ +G
Sbjct: 65 FLKNFCKKASTGFFEKYGLISHQINSYNDFINYG 98
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 74.3 bits (181), Expect = 2e-11
Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Frame = -2
Query: 246 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 103
D +EE G SS KEK +NGS +M+ + ++ L E
Sbjct: 5 DIMEEVGCSSGKEKISNGSARMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGET 64
Query: 102 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
YLK FC+KA+T FFEKYGLISHQINSYNDF+ +G
Sbjct: 65 YLKNFCKKASTGFFEKYGLISHQINSYNDFINYG 98
>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 70.9 bits (172), Expect = 2e-10
Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Frame = -2
Query: 240 LEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEGYL 97
+EE G SS KEK +NGST+M+ + ++ L E +L
Sbjct: 1 MEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFL 60
Query: 96 KMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
K FC+KA+T FFEKYG ISHQINSYNDF+ +G
Sbjct: 61 KNFCKKASTGFFEKYGSISHQINSYNDFINYG 92
>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
Length = 1018
Score = 70.1 bits (170), Expect = 3e-10
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 9/97 (9%)
Frame = -2
Query: 264 IEMGAWDFLEEAGPSS-KEKFANGSTQM--------EIXXXXXXXXXXXXDELGSAMQGL 112
I+M + +E+ G SS KEK +NGST M E+ D L A + L
Sbjct: 5 IQMTISNIMEDVGCSSGKEKTSNGSTMMDFDVDGLFEVDDYDWDEDEDEDDNLDMAKE-L 63
Query: 111 DEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
G+L+ FC+KA+ FFEKYG+ISHQI+SYNDF+++G
Sbjct: 64 GGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYG 100
>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
lycopersicum]
Length = 1219
Score = 68.2 bits (165), Expect = 1e-09
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
Frame = -2
Query: 246 DFLEEAGPSS-KEKFANGSTQM--------EIXXXXXXXXXXXXDELGSA-MQGLDEGYL 97
D +E+ G SS K K +NGST M E+ D L A ++ L G+L
Sbjct: 5 DIMEDVGCSSGKGKTSNGSTMMDFDIDGLFEVGDYDWDDDEDEDDNLDMASIKELGGGFL 64
Query: 96 KMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
+ FC+KA+ FFEKYGLISHQI+SYNDF+++G
Sbjct: 65 RNFCKKASAGFFEKYGLISHQIDSYNDFIRYG 96
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = -2
Query: 234 EAGPSSK-EKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFFE 58
+ G SSK EK ST M+I + +++ + E LK FC KAAT FF
Sbjct: 13 DIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFN 72
Query: 57 KYGLISHQINSYNDFVKHG 1
+YGLISHQINSYNDF+ +G
Sbjct: 73 EYGLISHQINSYNDFINNG 91
>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
Full=DNA-directed RNA polymerases IV and V subunit 2;
AltName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION
2; AltName: Full=RNA polymerase IV subunit 2a; Short=POL
IV 2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest
subunit [Arabidopsis thaliana]
gi|62183738|gb|AAX73261.1| RNA polymerase IV
second-largest subunit [Arabidopsis thaliana]
gi|332643291|gb|AEE76812.1| nuclear RNA polymerase D2A
[Arabidopsis thaliana] gi|332643292|gb|AEE76813.1|
nuclear RNA polymerase D2A [Arabidopsis thaliana]
Length = 1172
Score = 67.4 bits (163), Expect = 2e-09
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L EG+L+ FC+KAATSFF+KYGLISHQ+NSYN F++HG
Sbjct: 26 LGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHG 63
>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
Length = 1196
Score = 67.0 bits (162), Expect = 2e-09
Identities = 36/82 (43%), Positives = 49/82 (59%)
Frame = -2
Query: 246 DFLEEAGPSSKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATS 67
D E+ SSK + +GS M+I ELG E +L+ FC++A+TS
Sbjct: 6 DAKEDVAMSSKGEKFSGSVDMDIDDEEEFNELTSIKELG-------EVFLQNFCKEASTS 58
Query: 66 FFEKYGLISHQINSYNDFVKHG 1
FF +YGLISHQINSYNDF+++G
Sbjct: 59 FFSEYGLISHQINSYNDFIRNG 80
>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1219
Score = 67.0 bits (162), Expect = 2e-09
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Frame = -2
Query: 246 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELG---------SAMQGLDEGYL 97
D +E+ G SS K K +NGST M+ + ++++ L G+L
Sbjct: 5 DIMEDVGCSSGKAKTSNGSTMMDFDIDGLFEVEDYDWDEDEDEDDNLDMTSIKELGGGFL 64
Query: 96 KMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
+ FC+KA+ FFEKYG+ISHQI+SYNDF+++G
Sbjct: 65 RNFCKKASAGFFEKYGVISHQIDSYNDFIRYG 96
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = -2
Query: 258 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 88
MGA D + G SS EK +NG QMEI +GS + L++ YLK F
Sbjct: 37 MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 85
Query: 87 CRKAATSFFEKYGLISHQINSYNDFVKHG 1
C+K A SFF +YGLI HQINS+NDF+K+G
Sbjct: 86 CKKVAVSFFNEYGLIQHQINSFNDFIKNG 114
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 67.0 bits (162), Expect = 2e-09
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = -2
Query: 258 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 88
MGA D + G SS EK +NG QMEI +GS + L++ YLK F
Sbjct: 1 MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 49
Query: 87 CRKAATSFFEKYGLISHQINSYNDFVKHG 1
C+K A SFF +YGLI HQINS+NDF+K+G
Sbjct: 50 CKKVAVSFFNEYGLIQHQINSFNDFIKNG 78
>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
Length = 1200
Score = 66.2 bits (160), Expect = 4e-09
Identities = 27/46 (58%), Positives = 38/46 (82%)
Frame = -2
Query: 138 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
+ +++ L EG+LK FC++AA +FF +YGLISHQINSYNDF+K+G
Sbjct: 38 DYSTSIHDLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNG 83
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus
sinensis] gi|557545145|gb|ESR56123.1| hypothetical
protein CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 65.5 bits (158), Expect = 7e-09
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = -2
Query: 129 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
++++ L E +LK FCRKAA SFF +YGL+SHQINSYN+F+K+G
Sbjct: 37 TSLRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNG 79
>ref|XP_002885593.1| hypothetical protein ARALYDRAFT_898915 [Arabidopsis lyrata subsp.
lyrata] gi|297331433|gb|EFH61852.1| hypothetical protein
ARALYDRAFT_898915 [Arabidopsis lyrata subsp. lyrata]
Length = 505
Score = 65.1 bits (157), Expect = 9e-09
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L E +L+ FC+KAATSFF+KYGLISHQ+NSYN F++HG
Sbjct: 22 LGESFLQSFCKKAATSFFDKYGLISHQLNSYNFFIQHG 59
>ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutrema salsugineum]
gi|557107799|gb|ESQ48106.1| hypothetical protein
EUTSA_v10019931mg [Eutrema salsugineum]
Length = 1169
Score = 64.3 bits (155), Expect = 2e-08
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = -2
Query: 123 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
+ L E +L+ FC+KAATSFFE+YGLISHQ+NSYN F++HG
Sbjct: 17 LSDLGEPFLQSFCKKAATSFFEEYGLISHQLNSYNFFIQHG 57
>ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Capsella rubella]
gi|482568808|gb|EOA32997.1| hypothetical protein
CARUB_v10016327mg [Capsella rubella]
Length = 1161
Score = 63.9 bits (154), Expect = 2e-08
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L + +L+ FC+KAATSFF+KYGLISHQ+NSYN F++HG
Sbjct: 22 LGQNFLQSFCKKAATSFFDKYGLISHQLNSYNFFIEHG 59
>sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
2b gi|9294064|dbj|BAB02021.1| DNA-dependent RNA
polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 63.2 bits (152), Expect = 4e-08
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L E +L+ FC+KAATSFFE++GLISHQ+NSYN F++HG
Sbjct: 17 LGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHG 54
>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata
subsp. lyrata]
Length = 1169
Score = 62.4 bits (150), Expect = 6e-08
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L E +L+ FC+KAATSFFE++GLISHQ+NSYN F++HG
Sbjct: 22 LGETFLQSFCKKAATSFFEEFGLISHQLNSYNFFIEHG 59
>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1031
Score = 60.8 bits (146), Expect = 2e-07
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = -2
Query: 114 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHG 1
L E +LK FC+K++ +FF +YGLISHQINSYNDF+K+G
Sbjct: 43 LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNG 80