BLASTX nr result
ID: Rehmannia24_contig00013685
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00013685
(668 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 88 3e-15
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 86 1e-14
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 85 2e-14
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 84 3e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 84 3e-14
ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, part... 84 5e-14
ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab... 84 5e-14
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 84 5e-14
gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [... 83 7e-14
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 83 7e-14
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 83 7e-14
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers... 83 7e-14
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 83 9e-14
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 83 9e-14
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 82 1e-13
ref|XP_003562103.1| PREDICTED: uncharacterized protein LOC100844... 82 1e-13
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ... 82 1e-13
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 80 4e-13
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 80 4e-13
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 80 4e-13
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 87.8 bits (216), Expect = 3e-15
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+W+L I KLKHFLWR + LP L RGM +D C C E ES+ H LF C A
Sbjct: 666 KIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFA 725
Query: 183 KLVWKMAAVNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTY-ILWWLWKTRNSWI 359
+ W+++ ++++ +I L N +I D L + +LW +WK RN+ +
Sbjct: 726 TMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVV 785
Query: 360 FNGEKISEILTASLANREWIEFAEA 434
FN + S +T A E E+ A
Sbjct: 786 FNNLRESPSITVVRAKAETNEWLNA 810
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 85.5 bits (210), Expect = 1e-14
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
+VWS K K+K FLWR + LPV + RRGM +D C CG+E ES HVLF C+ A
Sbjct: 821 QVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMA 880
Query: 183 KLVWKMAAVNWN--GIYNEKMDVK-EWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNS 353
+ VW ++ V G N + ++ + + P ++ R ++LW LWK RN
Sbjct: 881 RQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSW--PWVLWRLWKNRNK 938
Query: 354 WIFNG 368
F+G
Sbjct: 939 LFFDG 943
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 84.7 bits (208), Expect = 2e-14
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W + K+KHFLW+ + G LPV L RR +E + C CG+ + S+ H++ C AK
Sbjct: 974 IWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAK 1032
Query: 186 LVWKMAAVNWN-------GIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKT 344
VW++A V +N + +D K + +LP P+ + L ++LW LWK
Sbjct: 1033 KVWELAPVLFNPSEATHSSVALLLVDAKR----MVALP--PTGLGSAPLYPWLLWHLWKA 1086
Query: 345 RNSWIFNGEKISE---ILTASLANREWIE 422
RN IF+ SE +L A L R W+E
Sbjct: 1087 RNRLIFDNHSCSEEGLVLKAILDARAWME 1115
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 84.3 bits (207), Expect = 3e-14
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W L I K+K+ LWR I LP +S L RGM++D C C E+E++ HVLF C A
Sbjct: 1362 LWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAA 1421
Query: 186 LVWKMAAVNWNGIYNEKMDVKE-WWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSWIF 362
+W ++ W + D +E I+S N ++ +++W LWK RN+ +F
Sbjct: 1422 SIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVF 1481
Query: 363 N--GEKISEILTASLAN-REWIE 422
N E S ++T + A EW++
Sbjct: 1482 NKFSESCSRVVTQTEAEVNEWLQ 1504
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 84.3 bits (207), Expect = 3e-14
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+WS K+K FLWR + LPV + RRGM +D C CGEE ES+ HVLF C+ A
Sbjct: 1047 KIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLA 1106
Query: 183 KLVWKMAAVNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLS-TYILWWLWKTRNSWI 359
+ VW ++ V + + + + L I ++I S ++LW LWK R+
Sbjct: 1107 RQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLF 1166
Query: 360 FNGEKISEI 386
F G S +
Sbjct: 1167 FEGTIFSPL 1175
>ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, partial [Capsella rubella]
gi|482554155|gb|EOA18348.1| hypothetical protein
CARUB_v10006875mg, partial [Capsella rubella]
Length = 438
Score = 83.6 bits (205), Expect = 5e-14
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W L I KLKHFLWR + V L RR + ++ CSWC + ES EH+ F C R
Sbjct: 108 IWQLNIAPKLKHFLWRLASRAIGVADNLRRRNININPYCSWCCSDFESSEHIFFTCPRVH 167
Query: 186 LVWKMAAVNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTY-ILWWLWKTRNSWIF 362
+W+M V + + + +++ + L + S+ S + +LW LWKTRN+ +F
Sbjct: 168 PIWRMVGVPLTLLGDPNISLEDKLRYLFRLHNDSSLPIFKRTSPFLVLWRLWKTRNNLVF 227
Query: 363 N 365
N
Sbjct: 228 N 228
>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
Length = 352
Score = 83.6 bits (205), Expect = 5e-14
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+W+L I KLKHFLWR + + L RR M V+ CS C E E+ +H LF C
Sbjct: 23 KIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSI 82
Query: 183 KLVWKMAAVNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRI--HLSTYILWWLWKTRNSW 356
+ +W+ A + +++ + + L N I D++ +L ++LW +WKTRN
Sbjct: 83 RPIWRAAGIPTQDLWDRDKPFEGKIRFLLDLHDNKHI-DKVCRYLPFWLLWRIWKTRNDL 141
Query: 357 IFN-----GEKISEILTASLANREWIE 422
IFN GE I + A + +EW++
Sbjct: 142 IFNHKVTKGEDI--VGQALIDTKEWLD 166
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 83.6 bits (205), Expect = 5e-14
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
++W+L I KLKHFLWR + L L RGM +D IC C E ES+ H LF C A
Sbjct: 1201 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFA 1260
Query: 183 KLVWKMAAVNWNGIYNEKM--DVKEWWMSISSLPWNPSIMDRIH--LSTYILWWLWKTRN 350
+ W ++ + + I N+ M D +E +I + + ++ D H L +++W +WK RN
Sbjct: 1261 TMAWWLS--DSSLIRNQLMSNDFEENISNILNFVQDTTMSD-FHKLLPVWLIWRIWKARN 1317
Query: 351 SWIFNGEKIS---EILTASLANREWIEFAEA 434
+ +FN + S +L+A +W+ ++
Sbjct: 1318 NVVFNKFRESPSKTVLSAKAETHDWLNATQS 1348
>gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [Prunus persica]
Length = 1060
Score = 83.2 bits (204), Expect = 7e-14
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+W+LKI NK+K FLWRC LP +L R + IC C + ESV H ++ C A
Sbjct: 747 KIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLCEAA 806
Query: 183 KLVWKMAAVNWNGIYN--EKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSW 356
K VW+ +A W + +E W ++ S + L Y+ W LW RNS+
Sbjct: 807 KEVWRNSA--WGNVCEVWRVNSFRELWHALQL----SSSGEEQGLFAYLCWGLWNRRNSF 860
Query: 357 IFNGEKISEILTASLANREWIEFAEA 434
IF G+ + I S + EF++A
Sbjct: 861 IFEGKSETAIQLLSRMTKLAQEFSDA 886
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 83.2 bits (204), Expect = 7e-14
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
++W+L I KLKHFLWR + L L RGM +D C C E ES+ H LF C A
Sbjct: 161 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220
Query: 183 KLVWKMAAVNWNGIYNEKM--DVKEWWMSISSLPWNPSIMDRIH--LSTYILWWLWKTRN 350
+ W+++ + + I N+ M D +E +I + + ++ D H L +++W +WK RN
Sbjct: 221 TMAWRLS--DSSLIRNQLMSNDFEENISNILNFVQDTTMSD-FHKLLPVWLIWRIWKARN 277
Query: 351 SWIFNGEKIS---EILTASLANREWIEFAEA 434
+ +FN + S +L+A +W+ ++
Sbjct: 278 NVVFNKFRESPSKTVLSAKAETHDWLNATQS 308
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 83.2 bits (204), Expect = 7e-14
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
++W+L I KLKHFLWR + L L RGM +D C C E ES+ H LF C A
Sbjct: 1427 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 1486
Query: 183 KLVWKMAAVNWNGIYNEKM--DVKEWWMSISSLPWNPSIMDRIH--LSTYILWWLWKTRN 350
+ W+++ + + I N+ M D +E +I + + ++ D H L +++W +WK RN
Sbjct: 1487 TMAWRLS--DSSLIRNQLMSNDFEENISNILNFVQDTTMSD-FHKLLPVWLIWRIWKARN 1543
Query: 351 SWIFNGEKIS---EILTASLANREWIEFAEA 434
+ +FN + S +L+A +W+ ++
Sbjct: 1544 NVVFNKFRESPSKTVLSAKAETHDWLNATQS 1574
>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 83.2 bits (204), Expect = 7e-14
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
+VW L+ + K+K FLW+ + G +PV +L RGM++D C CG E ES++HVLF C+
Sbjct: 893 QVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFP 952
Query: 183 KLVWKMAAVN-------WNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWK 341
+ VW M+ ++ +Y ++ + ++ +L W + +I+W +WK
Sbjct: 953 RQVWAMSNIHVPLLGFECGSVY---ANLYHFLINRDNLKWPVELRRSF---PWIIWRIWK 1006
Query: 342 TRNSWIFNGEKISEILT 392
RN + F G++ + + T
Sbjct: 1007 NRNLFFFEGKRFTVLET 1023
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 82.8 bits (203), Expect = 9e-14
Identities = 40/123 (32%), Positives = 62/123 (50%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+W+L K++ FLW+ +HG +PV+ L RG+ D C C E E++ H+LF C A
Sbjct: 1044 KIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLA 1103
Query: 183 KLVWKMAAVNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSWIF 362
+ VW + ++ G I N +S +ILW+LWK RN+ +F
Sbjct: 1104 RQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLF 1163
Query: 363 NGE 371
G+
Sbjct: 1164 EGK 1166
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 82.8 bits (203), Expect = 9e-14
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
K+W + K++HFLW+C+ LPV L R + + C C KE+V H+LF CT A
Sbjct: 256 KIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFA 315
Query: 183 KLVWKMAA--VNWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSW 356
+L W +++ + G + + + V +W+ + NP L ++LW LWK RN
Sbjct: 316 RLTWAISSIPIPLGGEWADSIYVNLYWV-FNLGNGNPQWEKASQLVPWLLWRLWKNRNEL 374
Query: 357 IFNGEKIS 380
+F G + +
Sbjct: 375 VFRGREFN 382
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 82.4 bits (202), Expect = 1e-13
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W K+KHF WR H LP L+RR + D C CGE E V H+LF C +K
Sbjct: 501 IWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSK 560
Query: 186 LVWKMAAVN-------WNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKT 344
+W+ A + + +N+ ++ SI L N S + L +I W +WK
Sbjct: 561 EIWEQAHIKLCPGDSLMSNSFNQNLE------SIQKL--NQSARKDVSLFPFIGWRIWKM 612
Query: 345 RNSWIFNGEKIS---EILTASLANREWIE 422
RN IFN ++ S I A + ++W E
Sbjct: 613 RNDLIFNNKRWSIPDSIQKALIDQQQWKE 641
>ref|XP_003562103.1| PREDICTED: uncharacterized protein LOC100844438 [Brachypodium
distachyon]
Length = 2492
Score = 82.0 bits (201), Expect = 1e-13
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
VWS+K + K++ FLW + L L RG + +C C + +E H++ HC AK
Sbjct: 1988 VWSIKGEGKVRFFLWLLLQNRLWTADRLAARGWPHNALCLLCDQVQEGAAHLMIHCVFAK 2047
Query: 186 LVWKMAAVNW---NGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSW 356
VW ++V W + ++ WW I S P + S I ++ I W LWK RNS
Sbjct: 2048 EVWHASSVKWPRVGAVAAASPSLRTWWRQIISGPKSASKDKEIAMAALIAWHLWKERNSR 2107
Query: 357 IFNGEKIS 380
+F ++++
Sbjct: 2108 VFQQKEMN 2115
>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 1555
Score = 82.0 bits (201), Expect = 1e-13
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
VW L K+K F+W+ + G +PV L R +++D C CG ES+ H+LFHC A+
Sbjct: 1251 VWKLDCAPKVKLFVWKVLKGAVPVGERLLERHIDIDPRCKRCG-SNESITHLLFHCQFAQ 1309
Query: 186 LVWKMAAVNWNGIYNEKMDVKEWWMSISSL-PWNPSIMDRIHLSTYILWWLWKTRNSWIF 362
VW +A + + +D+ W ++S+L P+ + +L +I W +WK RN ++F
Sbjct: 1310 RVWHLAPLATAPDFRGMIDLMADWPALSNLKALPPTGIASGNLVPWIFWNIWKARNRFVF 1369
Query: 363 NGEKISEILTASLA---NREW 416
G S T S A REW
Sbjct: 1370 EGVSASPEDTLSSAIRLAREW 1390
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 80.5 bits (197), Expect = 4e-13
Identities = 47/127 (37%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W L + NK+K FLWR H LP L +R + C CGE +E+V H L C AK
Sbjct: 644 IWDLLVPNKVKLFLWRACHAFLPCVERLFKRNICSHSGCGRCGEGEETVVHSLCWCRVAK 703
Query: 186 LVWKMAAVNWNGIYNEKMDVKEWWMS----ISSLPWNPSIMDRIHLSTYILWWLWKTRNS 353
VWK W G+Y K W +S + L + L I WWLWK RN
Sbjct: 704 KVWK--CTYWRGVY------KSWQISSFADLFGLVAMEGNIKNTELFALICWWLWKDRNE 755
Query: 354 WIFNGEK 374
+F+G+K
Sbjct: 756 -VFHGKK 761
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 80.5 bits (197), Expect = 4e-13
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Frame = +3
Query: 3 KVWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRA 182
++W LKI K+KHF+WRC+ G L + L R + D C C E++ H++F C+ A
Sbjct: 1387 EIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYA 1446
Query: 183 KLVWKMAAVNWNG----IYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRN 350
++VW+ A N++G + + ++ + N I++ + + +I+W LWK+RN
Sbjct: 1447 QVVWRSA--NFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGL-MPFWIMWRLWKSRN 1503
Query: 351 SWIFNGEKISEILTASLANREWIEFAE 431
++F A A +E E+ E
Sbjct: 1504 EYLFQQLDRFPWKVAQKAEQEATEWVE 1530
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 80.5 bits (197), Expect = 4e-13
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 6 VWSLKIKNKLKHFLWRCIHGILPVQSMLERRGMEVDCICSWCGEEKESVEHVLFHCTRAK 185
+W L + K+KHFLWRC+ G L + L R ++ D IC C E+E++ H++F+C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 186 LVWKMAAV---NWNGIYNEKMDVKEWWMSISSLPWNPSIMDRIHLSTYILWWLWKTRNSW 356
VW+ A + N G + D + +S S +DR L +I+W LWK+RN +
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNS-LDRF-LPFWIMWRLWKSRNVF 154
Query: 357 IF 362
+F
Sbjct: 155 LF 156