BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00009415
         (408 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   191   7e-47
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   183   2e-44
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   180   2e-43
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   180   2e-43
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   178   8e-43
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   178   8e-43
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   176   3e-42
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   176   3e-42
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   176   3e-42
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   176   3e-42
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           176   3e-42
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   175   5e-42
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               175   6e-42
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                175   6e-42
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   173   2e-41
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   173   2e-41
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   173   2e-41
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   173   2e-41
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   172   4e-41
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   172   4e-41

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  191 bits (486), Expect = 7e-47
 Identities = 89/135 (65%), Positives = 110/135 (81%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           LEF +N F++LC + GI RH+TV YTPQQNG+AERMNRT+LERVR ML+SSGLSK FW E
Sbjct: 522 LEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAE 581

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           A  TA +LINRSPS  L+ K P+  ++GK  D+ +LKVFGC A+VH K DKLEPR+ KC+
Sbjct: 582 AAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCI 641

Query: 47  FLGYPEGVKGYRLWL 3
           FLGYP+GVKGY+LW+
Sbjct: 642 FLGYPKGVKGYKLWI 656


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  183 bits (465), Expect = 2e-44
 Identities = 85/135 (62%), Positives = 108/135 (80%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           LEF +N F++ C + GI  H+TV YTPQQNG+AERMNRT+LERVR ML+S GLSK FW E
Sbjct: 556 LEFLSNDFNSFCQKEGIATHRTVRYTPQQNGLAERMNRTILERVRCMLSSLGLSKVFWVE 615

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV T  +LI+RSPS  L+ K P+  ++GK +D+ +LKVFGC A+VH K DKLEPR+ KC+
Sbjct: 616 AVETVVHLISRSPSSALQFKTPQEKWTGKVVDYQHLKVFGCTAYVHTKTDKLEPRAVKCI 675

Query: 47  FLGYPEGVKGYRLWL 3
           FLGYP+GVKGY+LW+
Sbjct: 676 FLGYPKGVKGYKLWI 690


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  180 bits (456), Expect = 2e-43
 Identities = 83/134 (61%), Positives = 102/134 (76%)
 Frame = -2

Query: 407  LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
            LEFCN  FD  C + GI RH+TV +TPQQNGVAERMN+TL++R R M   +GLSK+FW E
Sbjct: 663  LEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAE 722

Query: 227  AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
            AV+TAAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEPR+ KC+
Sbjct: 723  AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCI 782

Query: 47   FLGYPEGVKGYRLW 6
            FLGY  GVKGYRLW
Sbjct: 783  FLGYATGVKGYRLW 796


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  180 bits (456), Expect = 2e-43
 Identities = 83/134 (61%), Positives = 102/134 (76%)
 Frame = -2

Query: 407  LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
            LEFCN  FD  C + GI RH+TV +TPQQNGVAERMN+TL++R R M   +GLSK+FW E
Sbjct: 876  LEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAE 935

Query: 227  AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
            AV+TAAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEPR+ KC+
Sbjct: 936  AVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCI 995

Query: 47   FLGYPEGVKGYRLW 6
            FLGY  GVKGYRLW
Sbjct: 996  FLGYATGVKGYRLW 1009


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  178 bits (451), Expect = 8e-43
 Identities = 79/133 (59%), Positives = 103/133 (77%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA
Sbjct: 558 EFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEA 617

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
            +TA YLINRSPS+PL  K P  ++SG   D+S L+VFGC A+ H   +KLEPR+ KC+F
Sbjct: 618 ANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLF 677

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 678 LGYGLGVKGYKLW 690


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  178 bits (451), Expect = 8e-43
 Identities = 79/133 (59%), Positives = 102/133 (76%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA
Sbjct: 558 EFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEA 617

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
            +TA YLINRSPS+PL  K P  ++SG   D+S L+VFGC A+ H    KLEPR+ KC+F
Sbjct: 618 ANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLF 677

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 678 LGYGSGVKGYKLW 690


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  176 bits (446), Expect = 3e-42
 Identities = 80/133 (60%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA
Sbjct: 557 EFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEA 616

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
             TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+F
Sbjct: 617 ASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLF 676

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 677 LGYGSGVKGYKLW 689


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  176 bits (446), Expect = 3e-42
 Identities = 80/133 (60%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA
Sbjct: 557 EFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEA 616

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
             TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+F
Sbjct: 617 ASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLF 676

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 677 LGYGSGVKGYKLW 689


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score =  176 bits (446), Expect = 3e-42
 Identities = 79/133 (59%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++   R ML+++ ++KRFW E 
Sbjct: 498 EFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISNTRCMLSNARMNKRFWAEV 557

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
            +TA YLINRSPS+PL  K P  V+SG   D+S L+VFGC A+ H    KLEPR+ KC+F
Sbjct: 558 ANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLF 617

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 618 LGYGSGVKGYKLW 630


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  176 bits (446), Expect = 3e-42
 Identities = 80/133 (60%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA
Sbjct: 557 EFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEA 616

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
             TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+F
Sbjct: 617 ASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLF 676

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 677 LGYGSGVKGYKLW 689


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  176 bits (446), Expect = 3e-42
 Identities = 80/133 (60%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA
Sbjct: 559 EFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEA 618

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
             TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+F
Sbjct: 619 ASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLF 678

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 679 LGYGSGVKGYKLW 691


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  175 bits (444), Expect = 5e-42
 Identities = 79/133 (59%), Positives = 101/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA
Sbjct: 558 EFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEA 617

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
            +TA YLINRSPS+PL  K P  V+SG   D+S L+VFGC A+ H    KLEPR+ KC+F
Sbjct: 618 ANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLF 677

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVK Y+LW
Sbjct: 678 LGYGSGVKRYKLW 690


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  175 bits (443), Expect = 6e-42
 Identities = 79/134 (58%), Positives = 100/134 (74%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           +EFC+ +F + C   GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL K+FW E
Sbjct: 381 MEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 440

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV TA YLINRSP   +  K P  V+SG   ++S+LKVFGC A+ H    KLEPR+ KC+
Sbjct: 441 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCI 500

Query: 47  FLGYPEGVKGYRLW 6
           FLGYP GVKGY+LW
Sbjct: 501 FLGYPSGVKGYKLW 514


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  175 bits (443), Expect = 6e-42
 Identities = 79/134 (58%), Positives = 100/134 (74%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           +EFC+ +F + C   GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL K+FW E
Sbjct: 549 MEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 608

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV TA YLINRSP   +  K P  V+SG   ++S+LKVFGC A+ H    KLEPR+ KC+
Sbjct: 609 AVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCI 668

Query: 47  FLGYPEGVKGYRLW 6
           FLGYP GVKGY+LW
Sbjct: 669 FLGYPSGVKGYKLW 682


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  173 bits (439), Expect = 2e-41
 Identities = 78/134 (58%), Positives = 101/134 (75%)
 Frame = -2

Query: 407  LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
            +EFC+ +F + C   GI RH TVP+TPQQNGVAERMNRT++ + R +L+++GL K+FW E
Sbjct: 771  MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 830

Query: 227  AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
            AV TA YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+
Sbjct: 831  AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 890

Query: 47   FLGYPEGVKGYRLW 6
            FLGYP GVKGY+LW
Sbjct: 891  FLGYPSGVKGYKLW 904


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  173 bits (439), Expect = 2e-41
 Identities = 78/134 (58%), Positives = 101/134 (75%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           ++FC+ +F + C   GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL K+FW E
Sbjct: 525 MDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 584

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV TA YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+
Sbjct: 585 AVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCI 644

Query: 47  FLGYPEGVKGYRLW 6
           FLGYP GVKGY+LW
Sbjct: 645 FLGYPSGVKGYKLW 658


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  173 bits (439), Expect = 2e-41
 Identities = 78/134 (58%), Positives = 101/134 (75%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           +EFC+ +F + C   GI RH TVP+TPQQNGVAERMNRT++ + R +L+++GL K+FW E
Sbjct: 564 MEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 623

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV TA YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+
Sbjct: 624 AVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCI 683

Query: 47  FLGYPEGVKGYRLW 6
           FLGYP GVKGY+LW
Sbjct: 684 FLGYPSGVKGYKLW 697


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  173 bits (438), Expect = 2e-41
 Identities = 80/135 (59%), Positives = 98/135 (72%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           LEFCN LFD  C   GI RH+T  YTPQQNGVAERMNRT++E+VRSML+ SGL KRFW E
Sbjct: 570 LEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAE 629

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           A HT   LIN++PS  L  + P+  +SG    +S L+ +GC AFVH    KLEPR+KK V
Sbjct: 630 ATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGV 689

Query: 47  FLGYPEGVKGYRLWL 3
            +GYP GVKGY++W+
Sbjct: 690 LIGYPVGVKGYKVWI 704


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
           gi|18542925|gb|AAL75759.1| Putative pol polyprotein
           [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1005

 Score =  172 bits (436), Expect = 4e-41
 Identities = 78/133 (58%), Positives = 100/133 (75%)
 Frame = -2

Query: 404 EFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEA 225
           EFC++ FD+   + GI RH T+PYTPQQNGVAERMNRT++ +   ML+++ ++KRFW EA
Sbjct: 295 EFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEA 354

Query: 224 VHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVF 45
            +TA YLINRSPS+PL  K P  V+SG   D+S L+VFGC A+ H    KLEPR+ KC+F
Sbjct: 355 ANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEPRAIKCLF 414

Query: 44  LGYPEGVKGYRLW 6
           LGY  GVKGY+LW
Sbjct: 415 LGYGSGVKGYKLW 427


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  172 bits (436), Expect = 4e-41
 Identities = 81/134 (60%), Positives = 100/134 (74%)
 Frame = -2

Query: 407 LEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 228
           LEFC + FD  C + GI RH+TV  TPQQNGVAERMN+TLLER R ML+++GL +RFW E
Sbjct: 542 LEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAE 601

Query: 227 AVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCV 48
           AV TA YLINR P   ++ K P  ++SGK  D+SNLK FGC A+ H    KLEPR+KK V
Sbjct: 602 AVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGV 661

Query: 47  FLGYPEGVKGYRLW 6
           F+GY +GVKG+R+W
Sbjct: 662 FVGYGDGVKGFRIW 675