BLASTX nr result
ID: Rehmannia24_contig00009027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00009027
(1170 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 237 6e-60
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 237 6e-60
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 237 8e-60
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 237 8e-60
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 233 9e-59
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 224 5e-56
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 223 2e-55
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 222 2e-55
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 221 6e-55
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 209 2e-51
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 208 4e-51
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 206 2e-50
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 202 2e-49
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 198 3e-48
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 196 2e-47
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 194 8e-47
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 192 2e-46
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 192 2e-46
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 192 2e-46
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 192 2e-46
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 237 bits (605), Expect = 6e-60
Identities = 113/199 (56%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETE 163
+ S+G G N EWKN++ RP NDD N L+T + QRLD FT+EEQD+L++ E
Sbjct: 1758 QGSKGWG-GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIE 1816
Query: 164 AIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 343
IM++IR++MHQ GYNDGDPL +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH FQ
Sbjct: 1817 PIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQ 1876
Query: 344 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 523
+SRCFY V+ DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P NRDR PA
Sbjct: 1877 ESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRNPA- 1933
Query: 524 GEAGTPSSWNRDSTPAPEE 580
E S + TP PEE
Sbjct: 1934 SEENENKSIGGELTPIPEE 1952
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 237 bits (605), Expect = 6e-60
Identities = 113/199 (56%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETE 163
+ S+G G N EWKN++ RP NDD N L+T + QRLD FT+EEQD+L++ E
Sbjct: 1818 QGSKGWG-GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIE 1876
Query: 164 AIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 343
IM++IR++MHQ GYNDGDPL +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH FQ
Sbjct: 1877 PIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQ 1936
Query: 344 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 523
+SRCFY V+ DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P NRDR PA
Sbjct: 1937 ESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRNPA- 1993
Query: 524 GEAGTPSSWNRDSTPAPEE 580
E S + TP PEE
Sbjct: 1994 SEENENKSIGGELTPIPEE 2012
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 237 bits (604), Expect = 8e-60
Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETE 163
E S+G G SN+ EWKNK+ RPN DD +A G+FT TRQR+D FT+EEQD+L + E
Sbjct: 1693 EGSRGWG-SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVE 1751
Query: 164 AIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 343
IM++IRRIMHQ GYNDGDPL DDQ+YI+D V N HPDKA KMG GID++MV+RH F
Sbjct: 1752 PIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1811
Query: 344 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 523
+SRCFY VS DG K DFSYRKCLENF++ KYPD AETFI KYF++ PR+G NR+R
Sbjct: 1812 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIP 1869
Query: 524 GEAGTPSSWNRDSTPAPEE 580
+ G NR+ + PEE
Sbjct: 1870 EDGG-----NREQSVVPEE 1883
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 237 bits (604), Expect = 8e-60
Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETE 163
E S+G G SN+ EWKNK+ RPN DD +A G+FT TRQR+D FT+EEQD+L + E
Sbjct: 1633 EGSRGWG-SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVE 1691
Query: 164 AIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 343
IM++IRRIMHQ GYNDGDPL DDQ+YI+D V N HPDKA KMG GID++MV+RH F
Sbjct: 1692 PIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1751
Query: 344 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 523
+SRCFY VS DG K DFSYRKCLENF++ KYPD AETFI KYF++ PR+G NR+R
Sbjct: 1752 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIP 1809
Query: 524 GEAGTPSSWNRDSTPAPEE 580
+ G NR+ + PEE
Sbjct: 1810 EDGG-----NREQSVVPEE 1823
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 233 bits (595), Expect = 9e-59
Identities = 114/175 (65%), Positives = 137/175 (78%), Gaps = 3/175 (1%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPN---DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 175
E S+G G SN+ +WKNKR RP+ +D NA G+FT TRQRLD FT++EQD+LS+ E +M
Sbjct: 1741 EGSRGWG-SNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLML 1799
Query: 176 NIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 355
+IRRIMHQ GYNDGDPL DDQ+Y++DNV +YHPDKA KMGAGIDH+ V+RH FQ+SRC
Sbjct: 1800 SIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRC 1859
Query: 356 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPA 520
FY VS DG K DFSYRKCLENF++GKYPD+A+ FI KYF R G NR R PA
Sbjct: 1860 FYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYF----ARRG-NRQRTPA 1909
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 224 bits (571), Expect = 5e-56
Identities = 112/198 (56%), Positives = 140/198 (70%), Gaps = 7/198 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEA 166
E+S G G S+ +WK K+ P N+D ++ LFT TRQRLD FT+EEQD LS E
Sbjct: 1848 ETSGGWG-SDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEP 1906
Query: 167 IMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQD 346
MK+IRRIMH+ GYNDGDP+ +DQ++IIDNV NYHPDKAAKMG+GIDH+M++RH FQD
Sbjct: 1907 TMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQD 1966
Query: 347 SRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARG 526
SRC Y VS DG K DFSYRKCL N ++ ++PDVA+ F+ KYF+KP+P G N+DR
Sbjct: 1967 SRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKP--GGNQDR----- 2019
Query: 527 EAGTPS-SWNRDSTPAPE 577
TP +WN P PE
Sbjct: 2020 -ISTPEPAWNNTQAPTPE 2036
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 223 bits (567), Expect = 2e-55
Identities = 113/190 (59%), Positives = 135/190 (71%), Gaps = 6/190 (3%)
Frame = +2
Query: 29 SNDAEWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 190
S+ EWKNK P ND+ L+TVTRQRLD FT+EEQDVLS E +M+++RRI
Sbjct: 1669 SSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRI 1728
Query: 191 MHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 370
MHQ GYNDGDPL DDQ++++DNV NYHPDKAAKMG GIDH+ VNRHG FQDSRCF+ VS
Sbjct: 1729 MHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVS 1788
Query: 371 VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 550
DG DFSYRKCL+N++R K+PD+AETFI KYF R G NR+R P + T S
Sbjct: 1789 TDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFS----RRG-NRERNPTLIQTPTLS-- 1841
Query: 551 NRDSTPAPEE 580
+ STP E
Sbjct: 1842 -QTSTPEQTE 1850
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 222 bits (566), Expect = 2e-55
Identities = 104/167 (62%), Positives = 126/167 (75%), Gaps = 7/167 (4%)
Frame = +2
Query: 29 SNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRR 187
S+ EWK K+ RP NDD ++TVTRQRLD FT+EEQD+LS E IM++IRR
Sbjct: 1686 SSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIRR 1745
Query: 188 IMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAV 367
IMHQ GYNDGD L DD+++I DNV NYHPDKA KMGAGIDH V++HG FQDSRC + V
Sbjct: 1746 IMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVV 1805
Query: 368 SVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRD 508
S DG + DFSYRKCLE+F+RGKYPD+ + FI KYF++ PRSG NR+
Sbjct: 1806 STDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRR--PRSGGNRE 1850
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 221 bits (562), Expect = 6e-55
Identities = 103/167 (61%), Positives = 126/167 (75%), Gaps = 7/167 (4%)
Frame = +2
Query: 29 SNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRR 187
S+ EWK K+ RP NDD ++TVTRQRLD FT+EEQD+LS+ E IM++IRR
Sbjct: 1688 SSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRR 1747
Query: 188 IMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAV 367
IMHQ GYNDGD L DD+++I DNV NYHPDKA KMGAGIDH V++HG FQDSRC + V
Sbjct: 1748 IMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVV 1807
Query: 368 SVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRD 508
S DG + DFSYRKCLE+F+RGKYP+ + FI KYF++ PRSG NR+
Sbjct: 1808 STDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRR--PRSGGNRE 1852
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 209 bits (531), Expect = 2e-51
Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 7/176 (3%)
Frame = +2
Query: 14 QGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIM 172
Q RG A +K+ P NDD + ++T TRQRLD FT+EEQD+LS+ E +M
Sbjct: 1605 QSRGSRRWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLM 1664
Query: 173 KNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSR 352
++IR+IMHQ GYNDGDPL DQ++I++NV +HPDKA KMGAG+D++MV++H F DSR
Sbjct: 1665 QSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSR 1724
Query: 353 CFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPA 520
CFY VS DG K DFSYRKCL+NF++GKYPD+A+ FI KYF+K PR G R+R A
Sbjct: 1725 CFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRK--PRFGGFRERSVA 1778
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 208 bits (529), Expect = 4e-51
Identities = 109/198 (55%), Positives = 136/198 (68%), Gaps = 6/198 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 184
E SQGRG SN +WKN R RP P QRLD +++EEQDVL E E IM++IR
Sbjct: 1865 EGSQGRG-SNSGDWKN-RNRPPRTPG---------QRLDLYSSEEQDVLKEIEPIMQSIR 1913
Query: 185 RIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 364
RIM Q GYNDGDPL DDQ ++++NV +HPDK KMGAGID++MVN+H FQDSRCFY
Sbjct: 1914 RIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYV 1973
Query: 365 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWN-RDRG-----PARG 526
V DG + DFSYRKCL+N++R KYP++AE+F KYF+KP+ R+ RG P R
Sbjct: 1974 VLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMPPRD 2033
Query: 527 EAGTPSSWNRDSTPAPEE 580
EA TP+ ++ STP P E
Sbjct: 2034 EAATPA--DQTSTPGPVE 2049
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 206 bits (523), Expect = 2e-50
Identities = 104/205 (50%), Positives = 133/205 (64%), Gaps = 17/205 (8%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTR--------------PNDDPNALGLFTVTRQRLDSFTAEEQ 142
E +G G SN EWK+++ + PNDD + L T TR+R+D F EE+
Sbjct: 1697 EGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVAL-TATRKRMDEFPTEEK 1755
Query: 143 DVLSETEAIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMV 322
DVLSE E++M++IRRIMHQ G DG+PL DDQTY+IDN++NYHPDKAAK+GAG+D I V
Sbjct: 1756 DVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITV 1815
Query: 323 NRHGEFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFK---KPQPRS 493
+H FQ+SRCFY VS DG TDFSY KC+E F++GKYP VAE+F KYF+ +PQP S
Sbjct: 1816 KKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRRSQRPQPAS 1875
Query: 494 GWNRDRGPARGEAGTPSSWNRDSTP 568
P +PS + TP
Sbjct: 1876 PSPASPSPTSPSPASPSPAPPNPTP 1900
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 202 bits (514), Expect = 2e-49
Identities = 94/170 (55%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETE 163
E + GP N EWK K +RP NDD + ++T TRQRLD FT+EEQDVLS E
Sbjct: 1807 EGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIE 1865
Query: 164 AIMKNIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 343
M +IRRIMHQ GYNDGD L +D ++I+D V N+HP+K AKMG+GID+ V+RHG FQ
Sbjct: 1866 PTMLSIRRIMHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQ 1925
Query: 344 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRS 493
+SRC + +S DG K DFSYRKCL+N ++ KYP++AE F KYF +P+PR+
Sbjct: 1926 ESRCLFVISTDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRPRPRN 1975
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 198 bits (504), Expect = 3e-48
Identities = 102/192 (53%), Positives = 131/192 (68%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 184
E SQGRG SN +WKN R RP P A G QRLD +++ EQDVL + E IM++IR
Sbjct: 1888 EGSQGRG-SNAGDWKN-RNRP---PRAPG------QRLDIYSSGEQDVLKDIEPIMQSIR 1936
Query: 185 RIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 364
RIM Q GYNDGDPL +DQ ++++NV +HPDK KMG GID++MVN+H FQ+SRCFY
Sbjct: 1937 RIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYV 1996
Query: 365 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPS 544
V DG DFSYRKCL N++ KYPD+AE+F+ KYF+KP+ R ++ P R EA TP
Sbjct: 1997 VCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARG--DQTATPGRDEAATPG 2054
Query: 545 SWNRDSTPAPEE 580
+ +TP +E
Sbjct: 2055 --EQTATPGRDE 2064
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 196 bits (498), Expect = 2e-47
Identities = 100/184 (54%), Positives = 128/184 (69%), Gaps = 6/184 (3%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 184
E SQGRG SN +WKN R RP P A G QRLD +++EEQDVL + E IM++IR
Sbjct: 1845 EGSQGRG-SNAGDWKN-RNRP---PRAPG------QRLDIYSSEEQDVLKDIEPIMQSIR 1893
Query: 185 RIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 364
RIM Q GY+DGDPL +DQ ++++NV +HPDK KMGAGID++MVN+H FQ+SRCFY
Sbjct: 1894 RIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYV 1953
Query: 365 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRS------GWNRDRGPARG 526
V DG DFSYRKCL N++ KYPD+AE+F+ KYF+KP+ R G ++ PA+
Sbjct: 1954 VCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARGDQTATLGGDQTATPAQD 2013
Query: 527 EAGT 538
EA T
Sbjct: 2014 EAAT 2017
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 194 bits (492), Expect = 8e-47
Identities = 95/195 (48%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Frame = +2
Query: 8 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 175
SS G A+WK KR P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 176 NIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 355
+R+IMH Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 356 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 535
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 536 TPSSWNRDSTPAPEE 580
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 192 bits (489), Expect = 2e-46
Identities = 98/204 (48%), Positives = 127/204 (62%), Gaps = 14/204 (6%)
Frame = +2
Query: 5 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 184
+ SQG G SN +WKNK RP P RLD +++EEQD+L + E I+++IR
Sbjct: 2046 QGSQGWG-SNAGDWKNKN-RPARPPGP---------RLDLYSSEEQDILKDIEPIVQSIR 2094
Query: 185 RIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 364
RIM Q GYNDGDPL +DQ Y+++NV +HPDK KMG GIDH+MV+RH FQ+SRCFY
Sbjct: 2095 RIMQQQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYV 2154
Query: 365 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPR--------------SGWN 502
V DG K DFSYRKCLE+F+R KY D AE+F KYF+KP+P+ G
Sbjct: 2155 VLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPRPKRDQIANSGGEQTANPGGE 2214
Query: 503 RDRGPARGEAGTPSSWNRDSTPAP 574
+ P + TP+ + +TP P
Sbjct: 2215 QTATPGGEQTTTPNGGEQTATPTP 2238
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 192 bits (488), Expect = 2e-46
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%)
Frame = +2
Query: 8 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 175
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 176 NIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 355
+R+IMH Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 356 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 535
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 536 TPSSWNRDSTPAPEE 580
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 192 bits (488), Expect = 2e-46
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%)
Frame = +2
Query: 8 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 175
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 176 NIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 355
+R+IMH Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 356 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 535
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 536 TPSSWNRDSTPAPEE 580
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 192 bits (488), Expect = 2e-46
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%)
Frame = +2
Query: 8 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 175
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 552 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 611
Query: 176 NIRRIMHQMGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 355
+R+IMH Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 612 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 671
Query: 356 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 535
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 672 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 722
Query: 536 TPSSWNRDSTPAPEE 580
N+D+TP EE
Sbjct: 723 -----NQDATPPGEE 732