BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00004826
         (600 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   193   3e-47
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...   191   2e-46
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   189   6e-46
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               186   3e-45
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   185   7e-45
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   181   1e-43
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   177   1e-42
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                177   2e-42
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   177   3e-42
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]             176   3e-42
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   176   4e-42
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664...   176   6e-42
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               173   3e-41
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   170   3e-40
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   169   4e-40
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   169   4e-40
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                  169   5e-40
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   168   9e-40
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           168   9e-40
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   168   9e-40

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  193 bits (490), Expect = 3e-47
 Identities = 94/197 (47%), Positives = 135/197 (68%)
 Frame = -3

Query: 592  PPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKR 413
            PP F++W+ +C+TSTSFS++V+G L G+F+G KGLRQGDPLSP LFVI +E LSRLL+ +
Sbjct: 615  PPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENK 674

Query: 412  TDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKS 233
                   +HPK   +RI+ LAFADDLM+   G  +S+R +   +E F N SGL MN  KS
Sbjct: 675  FSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKS 734

Query: 232  NIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWS 53
             ++ AG+++ D  D L+F  ++ G+ PFRYLG+PL   +L+ + + +L  KI    + W+
Sbjct: 735  AVYTAGLEDTDKEDTLAFGFVN-GTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWA 793

Query: 52   ALTLSYAGRAELIRSVL 2
              TLS+AGR +LI SV+
Sbjct: 794  TKTLSFAGRLQLISSVI 810


>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
            lycopersicum]
          Length = 717

 Score =  191 bits (484), Expect = 2e-46
 Identities = 90/198 (45%), Positives = 131/198 (66%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP LF  WVM+CV + ++++ VNG     F   KGLRQGDP+SP+LF I +EYLSRLLK 
Sbjct: 414  FPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIAMEYLSRLLKG 473

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
              +   FK+HPK   L +THL FADDL+L SRGD NS++ L +C  +F   SGL+ N+ K
Sbjct: 474  LKEDKSFKYHPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGLQANLNK 533

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
            S+I+  G++    + I+     +   +PF+YLG+PL++++L    +  L  K+   I+ W
Sbjct: 534  SSIYCGGVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPLIEKVMARINSW 593

Query: 55   SALTLSYAGRAELIRSVL 2
            +A  LSYAGRA+L+++VL
Sbjct: 594  TAKKLSYAGRAQLVKTVL 611


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  189 bits (479), Expect = 6e-46
 Identities = 89/198 (44%), Positives = 127/198 (64%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP  F+ W+MECV++ S+S+ VNG     FQ +KGLRQGDP+SP+LF +C+EYLSR L++
Sbjct: 606  FPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEE 665

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                  F FHPKC  L ITHL FADDL++  R D +S+  +    + F + SGL  +  K
Sbjct: 666  LKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEK 725

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
            SNI+  G+ +   R++  + ++  G +PFRYLG+PLT+++L  A  + L   I      W
Sbjct: 726  SNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTW 785

Query: 55   SALTLSYAGRAELIRSVL 2
             A  LSYAGR +LI+S+L
Sbjct: 786  MAKLLSYAGRLQLIKSIL 803


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  186 bits (473), Expect = 3e-45
 Identities = 93/199 (46%), Positives = 131/199 (65%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           +F P FI W+  C+T+ SFS+ VNG L G+FQ K+GLRQG  LSPYLFVIC++ LS++L 
Sbjct: 267 NFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLD 326

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           K      F FHPKC+ L +THL+FADDLM+LS G   S+  +LE  ++F  +SGLR+++ 
Sbjct: 327 KAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLE 386

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           KS ++MAG+     ++I +      G +P RYLG+PL  +RL  A +  L  +I+  I  
Sbjct: 387 KSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIAT 446

Query: 58  WSALTLSYAGRAELIRSVL 2
           W+    S+AGR  LI+SVL
Sbjct: 447 WTFRFFSFAGRFNLIKSVL 465


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  185 bits (470), Expect = 7e-45
 Identities = 90/199 (45%), Positives = 129/199 (64%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           +FPP+FI W+M CVT+ SF + VNG L G+F   +GLRQG  LSPYLFV+ +  LS+LL 
Sbjct: 2   EFPPVFIHWIMLCVTTASFLVQVNGELAGYFNSTRGLRQGCSLSPYLFVVSMNVLSKLLD 61

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           K T    F +HP+C+ + +THL+FADDLM+LS G   S+  ++E  E F   SGLR+++ 
Sbjct: 62  KATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISME 121

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           KS ++ AG+     +++++    + G++P RYLG+PL  ++L    +  L   I+  I  
Sbjct: 122 KSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGS 181

Query: 58  WSALTLSYAGRAELIRSVL 2
           WSA  LSYAGR  LI SVL
Sbjct: 182 WSARFLSYAGRLNLISSVL 200


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  181 bits (460), Expect = 1e-43
 Identities = 88/198 (44%), Positives = 126/198 (63%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP  FI W+  C+T+ SFS+ VNG L G+FQ  +GLRQG  LSPYLFVIC++ LS++L K
Sbjct: 621  FPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDK 680

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                  F +HPKC+ + +THL+FADDLM+LS G   S+  +++  ++F   SGLR+++ K
Sbjct: 681  AAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEK 740

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
            S +++AG+      ++      S G +P RYLG+PL  +RL       L  ++R  I  W
Sbjct: 741  STVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSW 800

Query: 55   SALTLSYAGRAELIRSVL 2
            ++  LSYAGR  LI SVL
Sbjct: 801  TSRFLSYAGRLNLISSVL 818


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  177 bits (450), Expect = 1e-42
 Identities = 89/199 (44%), Positives = 128/199 (64%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           +FP  FI W+  C+T+TSFS+ VNG L G+F+  +G+RQG  LSPYLFVI +E LS++L 
Sbjct: 25  NFPGEFIHWISRCITTTSFSVQVNGELAGYFRSARGIRQGCALSPYLFVISMEVLSKMLD 84

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           +   G  F FHPKC+ L +THL FADDLM+L+ G   SV  ++E +  F  +SGL++N+ 
Sbjct: 85  QAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINME 144

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           K+ ++ AG+ + +   ++S      G +P RYLG+PL  +RL       L  +IR  I  
Sbjct: 145 KTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGT 204

Query: 58  WSALTLSYAGRAELIRSVL 2
           W++  LS+AGR  LI SVL
Sbjct: 205 WTSRYLSFAGRLNLISSVL 223


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  177 bits (449), Expect = 2e-42
 Identities = 85/199 (42%), Positives = 125/199 (62%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           +FP  F  W+  C+++ +FS+ VNG L G F  K+GLRQG  LSPYLFVIC+  LS ++ 
Sbjct: 193 NFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMID 252

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
                    +HPKC+ L +THL FADDLM+   G   SV  ++   ++F  KSGL +++ 
Sbjct: 253 VAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLE 312

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           KS +++AG+ E +  +ILS    + G +P RYLG+PL  +++  A +  L  K+R+ I  
Sbjct: 313 KSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISS 372

Query: 58  WSALTLSYAGRAELIRSVL 2
           W+A +LSYAGR  LI SV+
Sbjct: 373 WTARSLSYAGRLALINSVI 391


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  177 bits (448), Expect = 3e-42
 Identities = 89/200 (44%), Positives = 126/200 (63%), Gaps = 1/200 (0%)
 Frame = -3

Query: 598  DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
            + P   I W+  C++S  FS+ VNG L G F  ++GLRQGDPLSPYLFVI +E LS  ++
Sbjct: 441  NIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQ 500

Query: 418  KRTDGSG-FKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNV 242
            +R + S  F++H +C  L ++HL FADDL++   GD NSVR L +   +F + S L+ NV
Sbjct: 501  RRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANV 560

Query: 241  LKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYID 62
             +S IF+AG+    +  +L  +N S G+ P RYLGIPL   +L++     L  +I T I 
Sbjct: 561  SESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIK 620

Query: 61   GWSALTLSYAGRAELIRSVL 2
             W    LS+AGR +LI+SVL
Sbjct: 621  SWENKVLSFAGRLQLIQSVL 640


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score =  176 bits (447), Expect = 3e-42
 Identities = 88/199 (44%), Positives = 125/199 (62%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           DFP  F+ W+M C+++ SFS+ VNG L G FQ K+GLRQG  LSPYLFV+ ++ LS+LL 
Sbjct: 147 DFPMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSMDVLSKLLD 206

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           +      F +H +C+ L +THL+FADDLM+LS G   S+  ++E  + F   SGL++++ 
Sbjct: 207 QAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISME 266

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           KS I++AG+ E    +I +      G +P RYLG+PL  +RL    +  L   I+  I  
Sbjct: 267 KSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGT 326

Query: 58  WSALTLSYAGRAELIRSVL 2
           W+   LSYAGR  LI SVL
Sbjct: 327 WTTRYLSYAGRLNLITSVL 345


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  176 bits (446), Expect = 4e-42
 Identities = 82/198 (41%), Positives = 123/198 (62%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP +FI W+M CV + S+S+ +NG     F  +KGLRQGDPLSP+LF + +EYLSR +  
Sbjct: 609  FPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGN 668

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                  F FHPKC  +++THL FADDL++ +R D +S+  ++     F   SGL+ ++ K
Sbjct: 669  MCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEK 728

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
            S I+  G+   +   +     +  GS+PFRYLG+PL +++L  +  + L  KI T   GW
Sbjct: 729  SCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGW 788

Query: 55   SALTLSYAGRAELIRSVL 2
             A  LSYAGR +L++++L
Sbjct: 789  VAHLLSYAGRLQLVKTIL 806


>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
          Length = 939

 Score =  176 bits (445), Expect = 6e-42
 Identities = 85/198 (42%), Positives = 124/198 (62%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP  FI W+M  V S ++  ++NG      + ++G+RQGDP+SP LF++ +EYL+R+L +
Sbjct: 434  FPDQFIKWIMIAVRSVTYVFNINGRFTRRLEARRGIRQGDPISPLLFILVMEYLNRILSQ 493

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                  F +H KC  ++IT+L FADDL+L SRGD  SV+I+L+    F    GL +N  K
Sbjct: 494  LDKIPNFNYHSKCEKMKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSK 553

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
             NI+   +       +L  S   +G MPFRYLGIPL++++L + H++ L  KI   I  W
Sbjct: 554  CNIYCGSVDINVKEQLLLISGFKEGKMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHW 613

Query: 55   SALTLSYAGRAELIRSVL 2
            SA  LSYAGR +LI+SV+
Sbjct: 614  SAGLLSYAGRVQLIQSVI 631


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  173 bits (439), Expect = 3e-41
 Identities = 86/198 (43%), Positives = 122/198 (61%)
 Frame = -3

Query: 595 FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
           FP +FI W+  C+T+ SFS+ VNG L G FQ  +GLRQG  LSPYLFVIC++ LS+LL K
Sbjct: 174 FPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDK 233

Query: 415 RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                   +HP C+ + +THL+FADDLM+L+ G   S+  ++E  + F   SGL++++ K
Sbjct: 234 VVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEK 293

Query: 235 SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
           S IF AG+       + +      G +P RYLG+PL  +RL    +  L  +IR  I  W
Sbjct: 294 STIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSW 353

Query: 55  SALTLSYAGRAELIRSVL 2
           S+  LS+AGR  LI S++
Sbjct: 354 SSRFLSFAGRFNLISSII 371


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  170 bits (430), Expect = 3e-40
 Identities = 82/197 (41%), Positives = 122/197 (61%)
 Frame = -3

Query: 592  PPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKR 413
            P  F  W++EC+++ SFS+ +NG   GHF   KGLRQGDP+SPYLFV+ +E  S LL+ R
Sbjct: 513  PEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSR 572

Query: 412  TDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKS 233
                   +HPK   L I+HL FADD+M+   G  +S+  ++E +EDF   SGL MN  K+
Sbjct: 573  YTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKT 632

Query: 232  NIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWS 53
             ++ AG+ + ++  + S+     GS+P RYLG+PL + +L +A +  L  KI    + W 
Sbjct: 633  QLYHAGLSQSESDSMASY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWV 691

Query: 52   ALTLSYAGRAELIRSVL 2
               LS+AGR +L+ SV+
Sbjct: 692  VRLLSFAGRVQLLASVI 708


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  169 bits (429), Expect = 4e-40
 Identities = 83/199 (41%), Positives = 128/199 (64%)
 Frame = -3

Query: 598  DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
            +FPP F  W+  C+T+ SFS+ VNG L G F   + LRQG  LSPYLFVI ++ LS++L 
Sbjct: 508  NFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLD 567

Query: 418  KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
            K      F +HPKCR + +THL+FADDLM+LS G   S+  +++ + +F   SGL++++ 
Sbjct: 568  KAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISME 627

Query: 238  KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
            KS +++AG++    ++I+   +   G +P RYLG+PL ++RL  +    L  ++R  I+ 
Sbjct: 628  KSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEA 687

Query: 58   WSALTLSYAGRAELIRSVL 2
            W++  LS+AGR  LI S L
Sbjct: 688  WTSRFLSFAGRLNLISSTL 706


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  169 bits (429), Expect = 4e-40
 Identities = 83/198 (41%), Positives = 120/198 (60%)
 Frame = -3

Query: 595  FPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKK 416
            FP  F  W+  C+++ +FS+ VN    G F  K+GLRQG  LSPYLFVIC+  LS ++  
Sbjct: 763  FPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDV 822

Query: 415  RTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLK 236
                    +HPKC+ L +THL FADDLM+   G   SV  ++   +DF  KSGL +++ K
Sbjct: 823  AAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEK 882

Query: 235  SNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGW 56
            S +++A + E +  +ILS    + G +P RYLG PL  +++  A +  L  K+R+ I  W
Sbjct: 883  STLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSW 942

Query: 55   SALTLSYAGRAELIRSVL 2
            +A +LSYAGR  LI SV+
Sbjct: 943  TARSLSYAGRLALINSVI 960


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score =  169 bits (428), Expect = 5e-40
 Identities = 78/199 (39%), Positives = 126/199 (63%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           + P  F++WV  C+ +  FS+S+NG L G+F+G++GLRQGDPLSPYLF++ +E LSR+L 
Sbjct: 67  NLPRTFVTWVKVCMETPKFSVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLD 126

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           +    S    HPKC    ITHLAFADD+M+ + G+  S+  +   ++ F   SGL +N  
Sbjct: 127 RCAAESRLSLHPKCHSPVITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTE 186

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           K+ IF+ G+   +   + +    ++G +P RYLG+ L+  RL  + ++ L  +++  I+ 
Sbjct: 187 KTEIFLRGLNGTEASTLCAVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINS 246

Query: 58  WSALTLSYAGRAELIRSVL 2
           W+   LSYAGR +L+ +V+
Sbjct: 247 WTTRYLSYAGRLQLVGTVI 265


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  168 bits (426), Expect = 9e-40
 Identities = 83/197 (42%), Positives = 123/197 (62%)
 Frame = -3

Query: 592  PPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKR 413
            P  +I+W+ +C+T+ SF++SVNG   G F+  KGLRQGDPLSPYLFV+ +E  S+LL  R
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 412  TDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKS 233
             D     +HPK   L I+HL FADD+M+   G  +S+  + E ++DF + SGL++N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 232  NIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWS 53
             +F AG+ +   R   +      G+ P RYLG+PL   +L++A +  L  K+   +  W 
Sbjct: 596  QLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 52   ALTLSYAGRAELIRSVL 2
            +  LS+AGR +LI SV+
Sbjct: 655  SKALSFAGRTQLISSVI 671


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  168 bits (426), Expect = 9e-40
 Identities = 83/197 (42%), Positives = 123/197 (62%)
 Frame = -3

Query: 592  PPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKR 413
            P  +I+W+ +C+T+ SF++SVNG   G F+  KGLRQGDPLSPYLFV+ +E  S+LL  R
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 412  TDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKS 233
             D     +HPK   L I+HL FADD+M+   G  +S+  + E ++DF + SGL++N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 232  NIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWS 53
             +F AG+ +   R   +      G+ P RYLG+PL   +L++A +  L  K+   +  W 
Sbjct: 596  QLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 52   ALTLSYAGRAELIRSVL 2
            +  LS+AGR +LI SV+
Sbjct: 655  SKALSFAGRTQLISSVI 671


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  168 bits (426), Expect = 9e-40
 Identities = 84/199 (42%), Positives = 127/199 (63%)
 Frame = -3

Query: 598 DFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLK 419
           +FP  FI W+  C+++ SFS+ VNG L G+F+  +GLRQG  LSPYLFVI ++ LSR+L 
Sbjct: 341 NFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLD 400

Query: 418 KRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVL 239
           K      F +HP+C+ L +THL FADDLM+L+ G   SV  +++ +  F  K GL++ + 
Sbjct: 401 KAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICME 460

Query: 238 KSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDG 59
           K+ +++AG+ +   + + S  +   G +P RYLG+PL  +RL  + +  L  +IR  I  
Sbjct: 461 KTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGM 520

Query: 58  WSALTLSYAGRAELIRSVL 2
           W++  LS+AGR  LI SVL
Sbjct: 521 WTSRYLSFAGRLSLINSVL 539