BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00004456
         (681 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   168   1e-39
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   147   3e-33
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           141   2e-31
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        140   5e-31
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   139   8e-31
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   139   8e-31
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   139   8e-31
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   138   1e-30
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   137   2e-30
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   137   2e-30
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   135   1e-29
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   135   1e-29
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   134   3e-29
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     134   3e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   134   3e-29
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   134   3e-29
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   134   3e-29
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         132   1e-28
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   131   2e-28
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo...   131   2e-28

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  168 bits (426), Expect = 1e-39
 Identities = 95/226 (42%), Positives = 129/226 (57%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A +LINRSPS  L+ K P+  ++GK  D+ +LKVFGC A+VH K DKLEPR+ KC+FLGY
Sbjct: 586  AVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGY 645

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHL 320
            P+GVKGY+LW+  +   K I SRDV FNE D         + +  PA + VE L  L   
Sbjct: 646  PKGVKGYKLWIETQGKGKCIISRDVTFNEQD---------MSKQTPAKD-VEGLDQLQFE 695

Query: 319  GESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARRNI 140
             E E L  E   ET      +E  +          E +N P    L  Y LVRDR +R +
Sbjct: 696  VEHETLQPEKSKETSSKTAQEEIVH----------ERQNEP-TQGLESYNLVRDRQKRQV 744

Query: 139  RQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
            + P R+    MT+F  SV + I + EPK+Y+EA+ S  + +W+ A+
Sbjct: 745  KPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAI 790


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  147 bits (371), Expect = 3e-33
 Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 19/245 (7%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINR+P+  +  K PE +++G + D S+L+ FGC+A+VH   DK  PR+ K VF+GY
Sbjct: 517  AVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGY 576

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLP----- 335
            P G+KGYR+WL  E   K  TSR+V+FNE++    +++ +    E A  + ++L      
Sbjct: 577  PCGIKGYRVWLPKEG--KCTTSRNVVFNETELYKDTLSSADERKEEAEKEYKKLKKARKR 634

Query: 334  -GLSH------------LGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPE 194
               SH            L +S +   ET + +   + N E + +++E V +    EN   
Sbjct: 635  VSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVGS----EN--- 687

Query: 193  NDNLSDYQLVRDRARR-NIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVE 17
              +L DY L RD  RR NIR P+RF+D    ++  +  + ++  EPKSYEEALKS    +
Sbjct: 688  EQSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQ 747

Query: 16   WLNAM 2
            W NAM
Sbjct: 748  WENAM 752


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  141 bits (355), Expect = 2e-31
 Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS+PL  K P  ++SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 622  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 681

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGL--S 326
              GVKGY+LW   E G K   SR V+FNES    +  T SLP SE  P K  Q   +   
Sbjct: 682  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 734

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H+ +   +  E V+E D    +  + + HD+ V+  P +  + E     D  + + +++R
Sbjct: 735  HVDDDTGVQVEPVDEQDDHNNDVADDDAHDD-VQQTPPILQLEE-----DLSIAQRKSKR 788

Query: 145  NIRQPAR-FDDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVEWLNAM 2
              + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S  W++AM
Sbjct: 789  TTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 838


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  140 bits (352), Expect = 5e-31
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 4/230 (1%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A+YL+NRSPS  +  K PE +++GK  ++ NL+VFGC A++H    KLE R+ K VF+GY
Sbjct: 618  ASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGY 677

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHL 320
            P+GVKGY++W + +   K I SRDV+F+ES        V L ES      ++  P  +  
Sbjct: 678  PDGVKGYKIWCKDQG--KCIVSRDVVFHES--------VLLKESAEHDAGLQDNPAANKR 727

Query: 319  GESENLHDETVNETDLPARNQENANVHDEYVENLP----EVENMPENDNLSDYQLVRDRA 152
              SE      VN   L  ++ E     D+          EV  +P+ D L +YQL RDR 
Sbjct: 728  SGSET---SKVNVELLTDKSSEKEAASDDERATAESEEHEVSELPQAD-LQNYQLARDRV 783

Query: 151  RRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
            RR +R P R+    + ++     D +   EP ++ EA++S +  +WL AM
Sbjct: 784  RREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAM 833


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  139 bits (350), Expect = 8e-31
 Identities = 86/230 (37%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS+PL  K P  ++SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGL--S 326
              GVKGY+LW   E G K   SR V+FNES    +  T SLP SE  P K  Q   +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H+ +   +  E V+E D    +  + + HD+ V+  P +  + E     +  + + +++R
Sbjct: 733  HVDDDTGVQVEPVHEQDDHNNDVADDDAHDD-VQQTPPILQLEE-----ELPIAQRKSKR 786

Query: 145  NIRQPAR-FDDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVEWLNAM 2
              + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S  W++AM
Sbjct: 787  TTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  139 bits (350), Expect = 8e-31
 Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS  +  K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 835  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 894

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPG 332
            P GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L  
Sbjct: 895  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 950

Query: 331  LSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRA 152
              H  E E   D  +N+ D P     N+++          V+  P+        + +DR 
Sbjct: 951  SGHAPEKE---DVAINQ-DEPVIEDSNSSI----------VQQSPKR------SIAKDRP 990

Query: 151  RRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            +RNI+ P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+ AM
Sbjct: 991  KRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 1042


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  139 bits (350), Expect = 8e-31
 Identities = 86/230 (37%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS+PL  K P  ++SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGL--S 326
              GVKGY+LW   E G K   SR V+FNES    +  T SLP SE  P K  Q   +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H+ +   +  E V+E D    +  + + HD+ V+  P +  + E     +  + + +++R
Sbjct: 733  HVDDDTGVQVEPVHEQDDHNNDVADDDAHDD-VQQTPPILQLEE-----ELPIAQRKSKR 786

Query: 145  NIRQPAR-FDDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVEWLNAM 2
              + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S  W++AM
Sbjct: 787  TTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  138 bits (348), Expect = 1e-30
 Identities = 86/230 (37%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS+PL  K P  ++SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGL--S 326
              GVKGY+LW   E G K   SR V+FNES    +  T SLP SE  P K  Q   +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H+ +   +  E V+E D    +  + + HD+ V+  P +  + E     +  + + +++R
Sbjct: 733  HVDDYTGVQVEPVHEQDDHNNDVADDDAHDD-VQQTPPILQLEE-----ELPIAQRKSKR 786

Query: 145  NIRQPAR-FDDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVEWLNAM 2
              + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S  W++AM
Sbjct: 787  TTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  137 bits (346), Expect = 2e-30
 Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 8/234 (3%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            AAYL+NRSPS  +  K P+ ++SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY
Sbjct: 727  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 786

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHL 320
              GVKGYRLW   +   K I SRDV F+ES                           +  
Sbjct: 787  ATGVKGYRLWCTEDRTPKFIISRDVTFDES---------------------------AMF 819

Query: 319  GESENLHDET-VNETDLPARNQENANVHDEYVENLPEV-ENMPENDNLSDYQLVRDRARR 146
            G+ +   D    ++TDL A  +    V       + +  E  P  D      +   R RR
Sbjct: 820  GQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAHRPRR 879

Query: 145  NIRQPARFDDF------HMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
             IR+P R+ D       +  +F  +V + I   EP+SY+EA++SK+S +WL++M
Sbjct: 880  EIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSM 933


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  137 bits (346), Expect = 2e-30
 Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 8/234 (3%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            AAYL+NRSPS  +  K P+ ++SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY
Sbjct: 940  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 999

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHL 320
              GVKGYRLW   +   K I SRDV F+ES                           +  
Sbjct: 1000 ATGVKGYRLWCTEDRTPKFIISRDVTFDES---------------------------AMF 1032

Query: 319  GESENLHDET-VNETDLPARNQENANVHDEYVENLPEV-ENMPENDNLSDYQLVRDRARR 146
            G+ +   D    ++TDL A  +    V       + +  E  P  D      +   R RR
Sbjct: 1033 GQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAXRPRR 1092

Query: 145  NIRQPARFDDF------HMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
             IR+P R+ D       +  +F  +V + I   EP+SY+EA++SK+S +WL++M
Sbjct: 1093 EIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSM 1146


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  135 bits (340), Expect = 1e-29
 Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS  +  K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 589  ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGY 648

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPG 332
            P GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L  
Sbjct: 649  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 704

Query: 331  LSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRA 152
              H  E EN+    +N  D P     ++++          V+  P+      + + +D+ 
Sbjct: 705  SGHAPEKENV---AIN-LDAPVIEDSDSSI----------VQQSPK------HSIAKDKP 744

Query: 151  RRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            +RNI+ P R+ ++ ++ ++  SV + I+ N EP +Y +A+ S +   W+ AM
Sbjct: 745  KRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 796


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score =  135 bits (340), Expect = 1e-29
 Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS  +  K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 626  ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGY 685

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPG 332
            P GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L  
Sbjct: 686  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 741

Query: 331  LSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRA 152
              H  E EN+    +N  D P     ++++          V+  P+      + + +D+ 
Sbjct: 742  SGHAPEKENV---AIN-LDAPVIEDSDSSI----------VQQSPK------HSIAKDKP 781

Query: 151  RRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            +RNI+ P R+ ++ ++ ++  SV + I+ N EP +Y +A+ S +   W+ AM
Sbjct: 782  KRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 833


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  134 bits (337), Expect = 3e-29
 Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 5/227 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            AAYLINRSP+  +    PE ++  ++  + +L+ FG  A+VHQ   KL+PR+ K  FLGY
Sbjct: 633  AAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGY 692

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES-DFPCLSV----TVSLPESEPAPNKVEQLP 335
            P G KGY++WL  E   K + SR+V+F ES  +  L V    T +L + E   ++VEQ  
Sbjct: 693  PAGTKGYKVWLLEEE--KCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNK 750

Query: 334  GLSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDR 155
                 G    +  ++ +E   P    E ++  +E VE   + +  P+   L+ Y+L RDR
Sbjct: 751  FAEASGSGGVIQLQSDSE---PITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDR 807

Query: 154  ARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEW 14
             RRNI  P RF +    +F   V ++    EP+SY+EA++S++  +W
Sbjct: 808  VRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKW 854


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  134 bits (336), Expect = 3e-29
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 6/230 (2%)
 Frame = -3

Query: 673  YLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPE 494
            YLINRSPS     K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 493  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPGLS 326
            GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L    
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H  E EN+    +N+ D P     ++++  +                 S   + +D+ +R
Sbjct: 781  HAPEKENV---AINQ-DAPVIEDSDSSIVQQ----------------SSKRSIAKDKPKR 820

Query: 145  NIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            NI+ P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+ AM
Sbjct: 821  NIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 870


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  134 bits (336), Expect = 3e-29
 Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINR P   ++ K P  ++SGK  D+SNLK FGC A+ H    KLEPR+KK VF+GY
Sbjct: 606  ACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGY 665

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTV---SLPESEPAPNKVE--QLP 335
             +GVKG+R+W   E   + I SR+V+F+ES  P L   V   +  E+     +VE   + 
Sbjct: 666  GDGVKGFRIWSPAEK--RVIMSRNVVFDES--PLLRTIVKPTTTSETGSLDKQVEFQVIQ 721

Query: 334  GLSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDR 155
              S L E E    E   ETD+P                    E+MP + + S   + +DR
Sbjct: 722  NESDLKEPEEEDQEPQTETDIP--------------------ESMPSDIHQS---IAQDR 758

Query: 154  ARR-NIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
             RR  +R P R+    M  +   V + +D SEP +Y+EA+ S +S +W  AM
Sbjct: 759  PRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAM 810


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  134 bits (336), Expect = 3e-29
 Identities = 79/218 (36%), Positives = 115/218 (52%), Gaps = 1/218 (0%)
 Frame = -3

Query: 673  YLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPE 494
            +LI+RSPS  L+ K P+  ++GK +D+ +LKVFGC A+VH K DKLEPR+ KC+FLGYP+
Sbjct: 622  HLISRSPSSALQFKTPQEKWTGKVVDYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPK 681

Query: 493  GVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHLGE 314
            GVKGY+LW++ +   K I S+D   +E ++       S PE     +             
Sbjct: 682  GVKGYKLWIKTQGKEKCIISKD---SEMEY-----ETSQPEKSTETS------------- 720

Query: 313  SENLHDETVNE-TDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARRNIR 137
            SE + +E V E  D P R                          L  Y L RDR +R ++
Sbjct: 721  SETVQEEIVQERQDEPTR-------------------------GLESYSLARDRQKRQVK 755

Query: 136  QPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNS 23
             P ++    MT+F  SV + I + EPK+Y+EA+ S  +
Sbjct: 756  PPKKYGQAEMTTFALSVAEEIVDMEPKTYQEAINSNEA 793


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  134 bits (336), Expect = 3e-29
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 6/230 (2%)
 Frame = -3

Query: 673  YLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPE 494
            YLINRSPS     K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 493  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPGLS 326
            GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L    
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 325  HLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARR 146
            H  E EN+    +N+ D P     ++++  +                 S   + +D+ +R
Sbjct: 781  HAPEKENV---AINQ-DAPVIEDSDSSIVQQ----------------SSKRSIAKDKPKR 820

Query: 145  NIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            NI+ P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+ AM
Sbjct: 821  NIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 870


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  132 bits (332), Expect = 1e-28
 Identities = 81/232 (34%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS  +  K P  ++S   +++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 410  ACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 469

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPG 332
            P G+KGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L  
Sbjct: 470  PSGMKGYKLWCPKTK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 525

Query: 331  LSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRA 152
              H  E EN+    +N+ D+P     +++           V+  P+        + +D+ 
Sbjct: 526  SGHAPEKENV---AINQ-DVPVIEDSDSST----------VQQSPKR------FIAKDKP 565

Query: 151  RRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVEWLNAM 2
            +RN + P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+ AM
Sbjct: 566  KRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAM 617


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  131 bits (330), Expect = 2e-28
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 6/220 (2%)
 Frame = -3

Query: 679  AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
            A YLINRSPS  +  K P  ++SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 628  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 687

Query: 499  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSVTVSLPESEPAPNKVEQLPG 332
            P GVKGY+LW       K + SR+V+F+ES    D P  S  V +   E A  +VE L  
Sbjct: 688  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 743

Query: 331  LSHLGESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRA 152
              H  E E   D  +N+ D P     N+++          V+  P+        + +DR 
Sbjct: 744  SGHAPEKE---DVAINQ-DEPVIEDSNSSI----------VQQSPKR------SIAKDRP 783

Query: 151  RRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEAL 38
            +RNI+ P R+ ++ ++ ++  SV + I+ N+EP +Y EA+
Sbjct: 784  KRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAI 823


>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 1822

 Score =  131 bits (329), Expect = 2e-28
 Identities = 79/226 (34%), Positives = 110/226 (48%)
 Frame = -3

Query: 679 AAYLINRSPSVPLKGKCPESIFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGY 500
           AAYL+NR P   +  K PE +++   ++F NLKVFGC A+ HQK  KL+PR+KKC+F+GY
Sbjct: 83  AAYLVNRCPLAAIDFKTPEEVWTDYPLNFENLKVFGCTAYAHQKEGKLDPRAKKCMFVGY 142

Query: 499 PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSVTVSLPESEPAPNKVEQLPGLSHL 320
           PEGVKGY+LW +     K+  SRDV+F E+++   ++T    +     N  ++       
Sbjct: 143 PEGVKGYKLWCKYGNTSKSFISRDVVFRETEYYMATMTQGGSDESGMDNYAKERA----- 197

Query: 319 GESENLHDETVNETDLPARNQENANVHDEYVENLPEVENMPENDNLSDYQLVRDRARRNI 140
                       E +L      N    DE V N  +   + E  +L  Y LV        
Sbjct: 198 ------------EIELEQLGSSNTERDDEVVTNEEDHLQVEEEGDLVYYALV-------- 237

Query: 139 RQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVEWLNAM 2
                              D ID+SEPKSY EA+ SK+S  W  AM
Sbjct: 238 -----------------TADDIDDSEPKSYREAVASKDSECWKQAM 266