BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00004446
         (1724 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   342   e-112
gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Jap...   340   e-111
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     340   e-111
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         340   e-111
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   338   e-110
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc...   338   e-110
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   338   e-110
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   338   e-110
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   338   e-110
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   338   e-110
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...   338   e-110
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   338   e-110
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   338   e-110
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...   338   e-110
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   338   e-110
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   338   e-110
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   338   e-110
gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-...   338   e-110
gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subc...   338   e-110
gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subc...   337   e-110

>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  342 bits (876), Expect(2) = e-112
 Identities = 173/320 (54%), Positives = 224/320 (70%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 278  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 337

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 338  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 395

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 396  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 455

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 456  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 515

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 516  RLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 575

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 576  PKAWWGEALLTSNHVLNRVP 595



 Score = 91.7 bits (226), Expect(2) = e-112
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 24  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 83

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 84  QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 143

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 144 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 196

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 197 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 242


>gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
            gi|57863849|gb|AAW56890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1274

 Score =  340 bits (871), Expect(2) = e-111
 Identities = 172/320 (53%), Positives = 223/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSD GGE+ S+E   FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDHGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 92.8 bits (229), Expect(2) = e-111
 Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D+     +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDNFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLN 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  340 bits (873), Expect(2) = e-111
 Identities = 173/320 (54%), Positives = 223/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSQASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.3 bits (225), Expect(2) = e-111
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       I+++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIIEQFHDYKMADNRSVIE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++ +     D      +I KLP SW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELRKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  340 bits (872), Expect(2) = e-111
 Identities = 173/320 (54%), Positives = 223/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.3 bits (225), Expect(2) = e-111
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQIGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1518

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 533  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 592

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 593  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 650

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 651  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 710

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 711  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 770

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 771  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 830

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 831  PKAWWGEALLTSNHVLNRVP 850



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 279 GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 338

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 339 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 398

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 399 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 451

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 452 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 497


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYEYGGLFRFSLSDFCNKSVNHICGTVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSNGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|62733724|gb|AAX95834.1|
            retrotransposon protein, putative, Ty1-copia sub-class
            [Oryza sativa Japonica Group] gi|77550359|gb|ABA93156.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1277

 Score =  338 bits (866), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLASLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.7 bits (226), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNKNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281


>gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1468

 Score =  338 bits (868), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 404  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 463

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 464  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 521

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 522  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 581

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 582  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 641

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 642  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 701

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 702  PKTWWGEALLTSNHVLNRVP 721



 Score = 90.1 bits (222), Expect(2) = e-110
 Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 150 GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 209

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 210 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 269

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 270 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNINP 322

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C    G     K P     ++  VT+G   D
Sbjct: 323 NQDERTCFVCGQVGHLARKCLQCKGM----KAPAGQTSKSANVTIGNTGD 368


>gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  337 bits (865), Expect(2) = e-110
 Identities = 172/320 (53%), Positives = 222/320 (69%), Gaps = 1/320 (0%)
 Frame = +3

Query: 768  FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 947
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 948  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXXIANVECCDTW 1127
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+              + +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 1128 HGRLGHVNSRTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 1304
            H RL H+N   + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFVLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 1305 SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 1484
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 1485 ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 1664
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 1665 PKNCWGEALYSACLILNRVP 1724
            PK  WGEAL ++  +LNRVP
Sbjct: 615  PKAWWGEALLTSNHVLNRVP 634



 Score = 91.3 bits (225), Expect(2) = e-110
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 1/230 (0%)
 Frame = +1

Query: 82  GRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDEWLDFQMVDTKSVSD 261
           G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++ D++M D +SV +
Sbjct: 63  GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122

Query: 262 QLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFSLDELFVALR 441
           Q  E + +  +++       D      +I KLPPSW  F   LKHK + +S++ L  +L 
Sbjct: 123 QAHEIKTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGAALKHKRQEYSVEGLIASLD 182

Query: 442 IEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 618
           +E++ R      K    Q+ A +V                                    
Sbjct: 183 VEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQTTNFKKQKKNNNNP 235

Query: 619 XXSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGAASD 768
              +  C+VCG+  H+A+ C  R G     K P     ++  VT+G   D
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGNTGD 281