BLASTX nr result
ID: Rehmannia24_contig00004314
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00004314
(606 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 102 1e-19
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 102 1e-19
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 102 1e-19
gb|AAK29467.1| polyprotein-like [Solanum chilense] 102 1e-19
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 100 3e-19
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 98 2e-18
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 96 6e-18
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group] 96 1e-17
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 95 2e-17
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-... 95 2e-17
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-... 95 2e-17
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap... 95 2e-17
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi... 95 2e-17
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc... 95 2e-17
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ... 95 2e-17
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 102 bits (253), Expect = 1e-19
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 6/202 (2%)
Frame = -3
Query: 595 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXXKCYNCG 416
N G + GE +HVRGR++ R N++ +D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 415 ESGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 251
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 250 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 74
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 73 TLKNVRHVPDLCNNLMSCAALE 8
TLKNVR++P + NL+S + L+
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLD 367
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 102 bits (253), Expect = 1e-19
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 6/202 (2%)
Frame = -3
Query: 595 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXXKCYNCG 416
N G + GE +HVRGR++ R N++ +D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 415 ESGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 251
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 250 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 74
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 73 TLKNVRHVPDLCNNLMSCAALE 8
TLKNVR++P + NL+S + L+
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLD 367
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 102 bits (253), Expect = 1e-19
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 6/202 (2%)
Frame = -3
Query: 595 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXXKCYNCG 416
N G + GE +HVRGR++ R N++ +D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 415 ESGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 251
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 250 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 74
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 73 TLKNVRHVPDLCNNLMSCAALE 8
TLKNVR++P + NL+S + L+
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLD 367
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 102 bits (253), Expect = 1e-19
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Frame = -3
Query: 430 CYNCGESGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 251
CYNC + GH+ R+CPN K + +S+ Q N +T+ MV DV ++ + +
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAA------MVQNNDDVVLLINEEEECM 286
Query: 250 ----CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
E+EW++D+A ++H +P ++LF Y V M N + GIGDIC K + G
Sbjct: 287 HLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVG 346
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LK+VRHVPDL NL+S AL+ D
Sbjct: 347 CTLVLKDVRHVPDLRMNLISGIALDQD 373
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 100 bits (249), Expect = 3e-19
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Frame = -3
Query: 595 NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXXKCYNCG 416
N G + GE +HVRGR++ + N++ +D C C
Sbjct: 190 NDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 238
Query: 415 ESGHYIRECPN--KKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCEN 242
H I EC K +N+ + + ++AS + + D +G C V V +
Sbjct: 239 LKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDD----SGDCLVVFAGCVAG----HD 290
Query: 241 EWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 65
EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G TLK
Sbjct: 291 EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 350
Query: 64 NVRHVPDLCNNLMSCAALE 8
NVR++P + NL+S + L+
Sbjct: 351 NVRYIPGMSRNLISLSTLD 369
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 98.2 bits (243), Expect = 2e-18
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 3/202 (1%)
Frame = -3
Query: 598 VNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXXKCYNC 419
V K + +SGE + RGR++ + + ++ +++ KC+ C
Sbjct: 142 VFKSRKYDSGEGLVARGRTRKKNNGRRGRSRSKSRG-----------------NNKCFKC 184
Query: 418 GESGHYIRECPNKKGNQNQSN---DQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVC 248
+ GHY++ P++KG +N+ N A A + N D+ +V + NS
Sbjct: 185 KKEGHYVKNXPDRKGKENKRNYNSGDATFAKENSNTTDVLLVX------VTNS------- 231
Query: 247 ENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 68
++EW++DS C++HMSP + FS Y+ + V M N+ C V GI I +K G TL
Sbjct: 232 DDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHXIQIKMHGGIIRTL 291
Query: 67 KNVRHVPDLCNNLMSCAALEDD 2
NVRHVP L NL+ L+ +
Sbjct: 292 TNVRHVPKLNKNLIFLRTLDSN 313
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 96.3 bits (238), Expect = 6e-18
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Frame = -3
Query: 430 CYNCGESGHYIRECPN-KKGN---QNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
CYNC + GH+ R+CPN +KG Q ND A N + + +H
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFIN-----EEEECMH 286
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
S E+EW++D+A + H +P ++LF Y V M N + GIGDIC+K + G
Sbjct: 287 LSGP-ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVG 345
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LK+VRHVPDL NL+S AL+ D
Sbjct: 346 CTLVLKDVRHVPDLRMNLISGIALDRD 372
>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 95.5 bits (236), Expect = 1e-17
Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 612 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 654
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 655 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 709
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W ID+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 710 QST----NWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 765
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 766 KIVQLKNVQHVPSIDRNLVSGSRLTRD 792
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 69 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 111
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 112 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 166
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 167 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 222
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 223 KIVQLKNVQHVPSIDRNLVSGSRLTRD 249
>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549882|gb|ABA92679.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1302
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1320
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
sativa Japonica Group]
Length = 1320
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378
>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 159 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 201
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 202 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPAVFSVN 256
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 257 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 312
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 313 KIVQLKNVQHVPSIDRNLVSGSRLTRD 339
>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 94.7 bits (234), Expect = 2e-17
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Frame = -3
Query: 586 GRQNSGEVMHV---RGRSQYR------FDNQQKFDNHQNQNFIXXXXXXXXXXXXXXXXX 434
G Q+S V+H + + +Y+ F Q+K +N+ NQ+
Sbjct: 198 GGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQD-----------------ER 240
Query: 433 KCYNCGESGHYIRECPNKKGNQ---NQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 263
C+ CG+ GH R+CP +KG + Q++ AN+ T N GD +G ++P V SV+
Sbjct: 241 TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANV--TIGNTGD---GSGYGNLPTVFSVN 295
Query: 262 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 83
ST W +D+ H+ +LFS+Y+ + S V M N +V G+G + LKF SG
Sbjct: 296 QST----NWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSG 351
Query: 82 YAYTLKNVRHVPDLCNNLMSCAALEDD 2
LKNV+HVP + NL+S + L D
Sbjct: 352 KIVQLKNVQHVPSIDRNLVSGSRLTRD 378