BLASTX nr result
ID: Rehmannia24_contig00002400
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00002400
(5380 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 2907 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 2904 0.0
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2873 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2824 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2824 0.0
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe... 2809 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 2807 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 2807 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 2807 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 2807 0.0
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 2806 0.0
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo... 2805 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 2802 0.0
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 2801 0.0
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su... 2796 0.0
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 2795 0.0
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus... 2789 0.0
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 2788 0.0
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 2788 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2786 0.0
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 2907 bits (7536), Expect = 0.0
Identities = 1443/1536 (93%), Positives = 1493/1536 (97%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADE+DPK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQAMRIRNPKNRLRK+LDACKNK+KCEGGDEIDVQGQD+E P+KKSRGGCGAQQPKISI
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
DGMKMVAEYK+QKKK+DDPEQMPEPVERKQ LSAE+VLSILKR++DEDC LLGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQ L PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
LLRYSAWH ++EKG+ITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETISNAK +VKELI+AAQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK K+ F+DMY YEID+PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIA TGDNSWPLPVNI+RLVLNAQKTFK+DFRRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+V KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSK+ KFD+N+GFKA
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
ENEWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG C+L LNEEMLKQAIEIPLPSYMEGGL+FGMTP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSPNYLLSPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 2904 bits (7529), Expect = 0.0
Identities = 1441/1536 (93%), Positives = 1492/1536 (97%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMK VLSILR VCFNCSKILADE+DPK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQAMRIRNPKNRLRK+LDACKNK+KCEGGDEIDVQG D+E P+KKSRGGCGAQQPKISI
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
DGMKMVAEYK+QKKK+DDPEQMPEPVERKQ LSAE+VLSILKR++DEDC LLGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQ L PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
LLRYSAWH ++EKG+ITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQ AFSIGIGDTIADA+TMEKINETISNAK +VKELI+AAQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK K+ F+DMY YEID+PNWNP+YMLPEAVEDLK IREIRSVFDAEVQKLEADR Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIA TGDNSWPLPVNI+RLVLNAQKTFK+DFRRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+V KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSK+ KFD+N+GFKA
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
ENEWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG C+L LNEEMLKQAIEIPLPSYMEGGL+FGMTP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSPNYLLSPN+R+SP+TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2873 bits (7449), Expect = 0.0
Identities = 1422/1536 (92%), Positives = 1486/1536 (96%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDS-EPLKKSRGGCGAQQPKISI 4642
FKQA +IRNPKNRL+KILDACKNKSKCEGGDEI+ Q DS EP+KKSRGGCGAQQPK++I
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK+Q+KKNDDPEQ+PEPVERKQ LSAE+VL++LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
LLR SAWH E+E GFITPGDTQVRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVKELIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+ +F+ ++KYEID+ NWNP+YMLPE VEDLKTIRE R+VFDAEVQKLEADRFQ
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIATTGDNSWP+PVN+KRL+ NAQKTFKVD RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDD +SMEAQKNATLFFNILLRS ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+NKFDE++GFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDCAL LN++ML+ AIE+ LPSYME GLDFGMTP+RSP+TGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSPNYLLSPNLRLSP+TDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2824 bits (7320), Expect = 0.0
Identities = 1395/1536 (90%), Positives = 1469/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DEEDPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA+RI+NPKNRLRKILDACKNK+KCEGGDEIDVQGQDS+ P+KKSRGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM AEYK Q+KKNDDPEQ+PEPVERKQ L+AE+VL ILKRITDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R SAWH E+E G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+ +F +++YE ++ NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIATTG+NSWP+PVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+ +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K+NKFDEN+GFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG CAL LN+EMLK AIE+ LPSY++ GLDFGMTP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+GMMSPNYLLSPNLRLSP++DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2824 bits (7320), Expect = 0.0
Identities = 1395/1536 (90%), Positives = 1469/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DEEDPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA+RI+NPKNRLRKILDACKNK+KCEGGDEIDVQGQDS+ P+KKSRGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM AEYK Q+KKNDDPEQ+PEPVERKQ L+AE+VL ILKRITDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R SAWH E+E G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+ +F +++YE ++ NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIATTG+NSWP+PVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+ +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K+NKFDEN+GFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG CAL LN+EMLK AIE+ LPSY++ GLDFGMTP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+GMMSPNYLLSPNLRLSP++DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 2809 bits (7282), Expect = 0.0
Identities = 1389/1536 (90%), Positives = 1465/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA+RI++PKNRL+KILDACKNK+KC+GGDEIDVQGQ+SE P+KKSRGGCGAQQPK+SI
Sbjct: 121 FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM AEYK Q+KK+DD EQ+PEPVERKQ L+AE+VLS+LKRI+DED QLLGLNPKYAR
Sbjct: 181 EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R SAWH E E G ITPGDT VRIEKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVK+LI AQ KQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ + YE+D+ NWNP+YML E VEDLKTIRE R+VFDAEVQKLE DR Q
Sbjct: 901 LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIA TGDNSWPLPVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDD LS+EAQKNATLFF+ILLRS ASKRVL EYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+ +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FV SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
+PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
N EAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+NKFD N+GFKA
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDCAL LN+EMLK AIE+ LPSYM+ GLDFGMTP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+GMMSPNYLLSPNLRLSP++DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 2807 bits (7276), Expect = 0.0
Identities = 1385/1536 (90%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++IRNPKNRL+KILDACKNK+KCEGGDEIDV GQD E PLKK++GGCGAQQPK++I
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R +AWH +N+KG +T GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VK LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ +++E+D NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIAT+GD+SWPLPVN+KRL+ NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM T+IEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K K+D+N+GFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDC+L LN+EMLK AIE+ LPSYME GL+FGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP YL SPNLRLSPVTDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 2807 bits (7276), Expect = 0.0
Identities = 1385/1536 (90%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++IRNPKNRL+KILDACKNK+KCEGGDEIDV GQD E PLKK++GGCGAQQPK++I
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R +AWH +N+KG +T GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VK LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ +++E+D NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIAT+GD+SWPLPVN+KRL+ NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM T+IEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K K+D+N+GFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDC+L LN+EMLK AIE+ LPSYME GL+FGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP YL SPNLRLSPVTDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 2807 bits (7276), Expect = 0.0
Identities = 1385/1536 (90%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++IRNPKNRL+KILDACKNK+KCEGGDEIDV GQD E PLKK++GGCGAQQPK++I
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R +AWH +N+KG +T GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VK LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ +++E+D NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIAT+GD+SWPLPVN+KRL+ NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM T+IEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K K+D+N+GFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDC+L LN+EMLK AIE+ LPSYME GL+FGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP YL SPNLRLSPVTDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 2807 bits (7276), Expect = 0.0
Identities = 1385/1536 (90%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++IRNPKNRL+KILDACKNK+KCEGGDEIDV GQD E PLKK++GGCGAQQPK++I
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R +AWH +N+KG +T GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VK LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ +++E+D NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIAT+GD+SWPLPVN+KRL+ NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM T+IEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K K+D+N+GFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDC+L LN+EMLK AIE+ LPSYME GL+FGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP YL SPNLRLSPVTDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 2806 bits (7275), Expect = 0.0
Identities = 1385/1536 (90%), Positives = 1462/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+RSVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++IRNPKNRL+KILDACKNK+KCEGGDEIDV GQD E PLKK +GGCGAQQPK++I
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L R +AWH +N+KG +T GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VK LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ +++E+D NWNPNYML E ++DLKTI+E+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIAT+GD+SWPLPVN+KRL+ NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS+EAQKNATLFFNILLRS ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM T+IEEDVEFVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K K+D+N+GFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDC+L LN+EMLK AIE+ LPSYME GL+FGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP YL SPNLRLSPVTDAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 2805 bits (7272), Expect = 0.0
Identities = 1386/1537 (90%), Positives = 1471/1537 (95%), Gaps = 2/1537 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADEE+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA++I+NPKNRL+KILDACKNKSKCEGGDEIDVQGQD+E P+KKSRGGCGAQQPK+SI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
DGMKM+AEYK Q+K+NDD EQ+PEPVERKQ L+AE+VLS+LKRI+DEDCQLLGLNPK+AR
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFHVATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
LLR SAWH E E GFITPGDTQVRIEKGELLSGTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AK EVK LI AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNP-NYMLPEAVEDLKTIREIRSVFDAEVQKLEADRF 2305
L+SLK+K+++F+ +++Y ID+ +WNP +YMLPE +EDL+TI+E+R VF+AEVQKL+ADR+
Sbjct: 901 LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960
Query: 2304 QLGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVV 2125
QLGTEIA TGD++WPLPVN+KRL+ NAQKTFKVDFRR SD+HP+EIV++VDKLQERLKVV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 2124 VGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAA 1945
G D LS+EAQKNATLFF+ILLRS LASKRVL+EYRLT+EAFEWVIGEIESRFLQSLVA
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 1944 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1765
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 1764 KPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEE 1585
P+ SKTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP ST+IEED++FVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200
Query: 1584 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1405
+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 1404 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFK 1225
MNDE PKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+SK +KFDE DG+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 1224 AENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFD 1045
EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 1044 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETD 865
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 864 CLRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTG 685
LRGVTENIMLGQLAPIGTGDCAL LN+EMLK AIE+ LPSYME GL+FGMTPARSP++G
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1499
Query: 684 TPYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
TPYH+GMMSP+YLLSPNLRLSP+TDAQFSPYVGGMAF
Sbjct: 1500 TPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 2802 bits (7263), Expect = 0.0
Identities = 1380/1536 (89%), Positives = 1466/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRK+KCETC A+MAECPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDS-EPLKKSRGGCGAQQPKISI 4642
FKQA+RIRNPKNRL+KILDACKNKSKCEGGDEID+ GQD+ EP+KKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KK+DD EQ+PEPVERKQ LSAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L+RYS+WH E+E+G ITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+T+F+ +++YE D+ NW P YML E VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIATTGD+S PLPVN+KRL+ NAQKTFKVDFRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS EAQKNATL FNILLRS ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
DV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMST+IEED +FVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIKN+K+ KFDEN GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG+CAL LN+EMLK AIE+ LPSYM+ GLDFGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+G+MSP+YLLSPNLRLSP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 2801 bits (7261), Expect = 0.0
Identities = 1389/1539 (90%), Positives = 1469/1539 (95%), Gaps = 4/1539 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFP+SPAEVAKVRVVQFGILSP+EIR MSVV I+HSET ERGKPK GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKC+TC ANMAECPGHFGHLELAKPMFHIGF+KTVLSI+R VCFNCS+ILADEED +
Sbjct: 61 DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDV-QGQDSEPL--KKSRGGCGAQQPKI 4648
FKQA++IRNPK RL+K+LD CKNK+KCEGGD+ID Q QDSE + KK GGCGAQQPKI
Sbjct: 121 FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180
Query: 4647 SIDGMKMVAEYKLQKKKNDDPEQM-PEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPK 4471
+I+GMKMVAEYKL +KKND+ EQM PEPVERKQ L+AEKVL++LKRITDEDCQLLGLNPK
Sbjct: 181 TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240
Query: 4470 YARPDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAH 4291
YARPDWMILQV+ PSVMMDTS+RSEDDLTHQLAM+IRHNENLKRQE+NGAPAH
Sbjct: 241 YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300
Query: 4290 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 4111
IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360
Query: 4110 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKY 3931
SARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKY
Sbjct: 361 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420
Query: 3930 IIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 3751
IIR+DGQRLDLRYLKKS D HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421 IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480
Query: 3750 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 3571
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540
Query: 3570 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPK 3391
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600
Query: 3390 QINLLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 3211
QINL+RYSAWH E+E GFITPGDT VRIE+GELLSGTLCKKTLGTS+GSLIHVIWEEVGP
Sbjct: 601 QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660
Query: 3210 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQE 3031
DAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADAATMEKINETIS AKNEVKELI+AAQE
Sbjct: 661 DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720
Query: 3030 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 2851
KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780
Query: 2850 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 2671
QMTACVGQQNVEGKRIPFGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781 QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840
Query: 2670 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 2491
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 841 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900
Query: 2490 SQPLESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEAD 2311
SQ L+SLK+KR +F ++YKYEID NW+P+YMLPE VEDLKTIRE ++VFDAEVQKLEAD
Sbjct: 901 SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960
Query: 2310 RFQLGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLK 2131
R QLGTEI TTGDNSWP+PVN+KRL+ NAQK FKVD RRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961 RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020
Query: 2130 VVVGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLV 1951
VV GDD +S+EAQKNATLFFNILLRS ASKRVLKEYRLTREAF+WVIGEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080
Query: 1950 AAGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1771
A GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140
Query: 1770 YLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPD 1591
YLK +V+KTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200
Query: 1590 EEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1411
EE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260
Query: 1410 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDG 1231
RIMNDEAPKGEL DES+EDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+NKFDEN+G
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320
Query: 1230 FKAENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVIS 1051
FK E EWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVI+VLGIEAVR+ALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380
Query: 1050 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 871
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440
Query: 870 TDCLRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPL 691
D LRGVTENIMLGQLAPIGTGDCAL LN++ML+QAIE+ LPSYME G+DFGMTP+RSP+
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPM 1499
Query: 690 TGTPYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
TGTPYH+GMMSP YLLSPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537
>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
arietinum]
Length = 1834
Score = 2796 bits (7247), Expect = 0.0
Identities = 1378/1536 (89%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPKIGGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC A+MAECPGHFG+LELAKPMFHIGF+KTVLSI+R VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSE-PLKKSRGGCGAQQPKISI 4642
FKQA+RI++PKNRLRKILDACKNK+KCEGGD+ID+ G D+E P+KKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KK+DD EQ+PEPVERKQ LSAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDW+ILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD+
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP P ILKP P+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L+RYS+WH ENEKG ITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+ DF+ ++YE D+ NW P YML E VEDLKTIRE R+VF+AEVQKL+ADRFQ
Sbjct: 901 LDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIATTGD+S PLPVN+KRL+ NAQKTFKVDFRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDD LS EAQKNATL FNILLRS ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA+G
Sbjct: 1021 GDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGI DINKVFIKN+K+ KFDEN+GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 YEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG+CALLLN+EMLK AIE+ LPSYME GLDFGMTP RSP++ T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYME-GLDFGMTPGRSPISAT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+G+MSP+YLLSPNLRLSP DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 2795 bits (7246), Expect = 0.0
Identities = 1380/1535 (89%), Positives = 1457/1535 (94%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVV IEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSEPLKKSRGGCGAQQPKISID 4639
FK A+RI+NPKNRL+KILDACKNK+KCEGGDEIDVQ D EPLKKSRGGCGAQQPK++ID
Sbjct: 121 FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTD-EPLKKSRGGCGAQQPKLTID 179
Query: 4638 GMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYARP 4459
GMKMVAEYK Q+KK+DD EQ+PEPVERKQ L+AE+VLS+LKRI+DEDCQLLGLNPKYARP
Sbjct: 180 GMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYARP 239
Query: 4458 DWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIISE 4279
DWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIISE
Sbjct: 240 DWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISE 299
Query: 4278 FAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 4099
FAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART
Sbjct: 300 FAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 359
Query: 4098 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIRD 3919
VITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIRD
Sbjct: 360 VITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 419
Query: 3918 DGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 3739
DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF
Sbjct: 420 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 479
Query: 3738 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTL 3559
RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTL
Sbjct: 480 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 539
Query: 3558 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINL 3379
LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINL
Sbjct: 540 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINL 599
Query: 3378 LRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 3199
R SAWH E+E G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAAR
Sbjct: 600 QRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAAR 659
Query: 3198 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQLE 3019
KFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVKELI AQ K LE
Sbjct: 660 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSLE 719
Query: 3018 AEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 2839
EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA
Sbjct: 720 PEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 779
Query: 2838 CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 2659
CVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 780 CVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 839
Query: 2658 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQPL 2479
LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ L
Sbjct: 840 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKL 899
Query: 2478 ESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQL 2299
+SLK+K+ +F+ + Y D+ NWNP+YMLPE VEDLKTIRE R+VFDAEV KLE DR QL
Sbjct: 900 DSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQL 959
Query: 2298 GTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVG 2119
GTEIA TGDNSWPLPVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERL+VV G
Sbjct: 960 GTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVPG 1019
Query: 2118 DDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAGE 1939
DD LS+EAQKNATLFFNILLRS ASKRVL+EYRLTREAFEWVIGEIESRFLQSLVA GE
Sbjct: 1020 DDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGE 1079
Query: 1938 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP 1759
MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKP
Sbjct: 1080 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKP 1139
Query: 1758 DVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEID 1579
+ +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEED++FV+SYYEMPDEE++
Sbjct: 1140 EANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEVN 1199
Query: 1578 PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMN 1399
PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAEKLILRIRIMN
Sbjct: 1200 PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIMN 1259
Query: 1398 DEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKAE 1219
+E PKG+ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+NKFD+N+GFKAE
Sbjct: 1260 EETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKAE 1319
Query: 1218 NEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGS 1039
EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVR++LLDELRVVISFDGS
Sbjct: 1320 QEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGS 1379
Query: 1038 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDCL 859
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+VFAETD L
Sbjct: 1380 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDHL 1439
Query: 858 RGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGTP 679
RGVTENIMLGQLAPIGTGDCAL LN+EMLK AIE+ LPSY++ GLDFGMTP+RSP++GTP
Sbjct: 1440 RGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSGTP 1498
Query: 678 YHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
+ DGMMSPNYLLSPN+R+SP++DAQFSPYVGGMAF
Sbjct: 1499 FRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
Length = 1834
Score = 2789 bits (7230), Expect = 0.0
Identities = 1372/1536 (89%), Positives = 1463/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRK+KCETC A+MAECPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDS-EPLKKSRGGCGAQQPKISI 4642
FKQA+RIRNPKNRL+KILDACKNKSKCEGGDEID+ GQD+ EP+KKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMK++AEYK Q+KK+DD EQ+PEPVERKQ LSAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPK IN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L+RYS+WH E+E+G ITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+T+F+ +++YE D+ NW P YML E VEDLKTIRE R+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIATTGD+S PLPVN+KRL+ NAQKTFKVDFRRPSDMHPMEIVEA+DKLQERL+VV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS EAQKNATL FNILLRS ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
PDV KTKERAK+VQCALEYTTLRSVTQATEVWYDP+PMST+I+EDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIKN+K+ KFDE++GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG+CAL LN+EMLK AIE+ LPSYM+ GLDFGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+G+MSP+YLLSPNLRLSP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 2788 bits (7227), Expect = 0.0
Identities = 1375/1536 (89%), Positives = 1460/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRK+KCETC A+MAECPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDSEP-LKKSRGGCGAQQPKISI 4642
FKQA+RIRNPKNRL+KILDACKNKSKCEGGDEID+ GQD+E +KKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KK+DD EQ+PEPVERKQ LSAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L+RYS+WH E+E+G ITPGDT VRIEKGELL+GTLCKKTLGT +G LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK +VK+LIR A EK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
EAEPGR+MM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+T+F+ +++YE D+ NW P YML E VEDLKTIRE R+VF+AEVQKLEADRFQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
L TEIATTGD+S LPVN+KRL+ NAQKTFKVDFRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
G+D LS EAQKNATL FNILLRS ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
PDV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIKN+K+ KFDEN GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
EWMLDTEGVNLLAVMCHEDVD RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTG+CAL LN+EMLK AIE+ LPSYM+ GLDFGMTPARSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYH+G+MSP+YLLSPNLRLSP TDAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 2788 bits (7226), Expect = 0.0
Identities = 1369/1537 (89%), Positives = 1463/1537 (95%), Gaps = 2/1537 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSVV IEH+ET ERGKPK GGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVLSI+R VCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDS--EPLKKSRGGCGAQQPKIS 4645
FKQA++IRNPKNRL++I DACK+K C GGD++DVQ Q EP+K+ RGGCGAQQP I+
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179
Query: 4644 IDGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYA 4465
+DGMKMVAE+K KKKNDD EQ+PEPVERKQ+LSAE+VL++LKRI+DEDC LLGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 4464 RPDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 4285
RPDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 4284 SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 4105
+EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 4104 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYII 3925
RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 3924 RDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3745
R+DGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 3744 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3565
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 3564 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 3385
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599
Query: 3384 NLLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3205
NL+R+SAWH E E GFITPGDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 3204 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQ 3025
ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVKELI+ A +K
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719
Query: 3024 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2845
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 2844 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2665
TACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2664 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 2485
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 2484 PLESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRF 2305
L+SLK+K+ +F+ +++YE+D+ NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRF
Sbjct: 900 KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959
Query: 2304 QLGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVV 2125
QLGTEIATTGDN+WP+PVN+KRL+ NAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 2124 VGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAA 1945
GDD +S+EAQKNATLFFNILLRS ASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVA
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 1944 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1765
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 1764 KPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEE 1585
KP+V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ T+IEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 1584 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1405
+DPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 1404 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFK 1225
NDEAPKGE+ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K+NKF++NDGFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319
Query: 1224 AENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFD 1045
+NEWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379
Query: 1044 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETD 865
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 864 CLRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTG 685
LRGVTENIMLGQLAPIGTG CAL LN++ML+QAIE+ LPSY+E GLDFGMTPARSP++G
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498
Query: 684 TPYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
TPYH+GMMSP+YLLSPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2786 bits (7222), Expect = 0.0
Identities = 1374/1536 (89%), Positives = 1465/1536 (95%), Gaps = 1/1536 (0%)
Frame = -2
Query: 5178 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4999
MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IE SETTERGKPK GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 4998 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEEDPK 4819
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVLSI+R VCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4818 FKQAMRIRNPKNRLRKILDACKNKSKCEGGDEIDVQGQDS-EPLKKSRGGCGAQQPKISI 4642
FKQA++I+NPKNRL+KILDACKNK+KCEGGD+IDV QD+ EP+KKSRGGCGAQQP+++I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4641 DGMKMVAEYKLQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4462
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+D+DC+LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4461 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 4282
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLK+QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 4281 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4102
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4101 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3922
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3921 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3742
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3741 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3562
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3561 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3382
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3381 LLRYSAWHQENEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 3202
L+R +AWH ++E+G ITPGDT VRIEKGELLSGT+CKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3201 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 3022
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISNAKN VKELIR AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 3021 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2842
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2841 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2662
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2661 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP 2482
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2481 LESLKLKRTDFNDMYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRFQ 2302
L+SLK+K+++F+ ++KYE+D+ NWNP YM + ++DLK IRE+R VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 2301 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 2122
LGTEIATTGD+SWPLPVN++RL+ NAQKTFKVD RRPSD+HPME VEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 2121 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1942
GDD LS+EAQKNATLFF ILLRS LASKRVL++YRLTREAF+WVIGEIESRFLQSLVA G
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1941 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1762
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1761 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1582
P+ +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1581 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1402
P+KISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1401 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1222
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK SK++KFDEN+GFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 1221 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 1042
EWMLDTEGVNLLAVMC+E+VDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1041 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 862
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 861 LRGVTENIMLGQLAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGLDFGMTPARSPLTGT 682
LRGVTENIMLGQLAPIGTGDCAL LN++MLK AIE+ LPSYM+ GLDFGMTPARSP++ T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMD-GLDFGMTPARSPVSVT 1499
Query: 681 PYHDGMMSPNYLLSPNLRLSPVTDAQFSPYVGGMAF 574
PYHDGMMSP+YLLSP+LRLSP TDAQFSPYV GM F
Sbjct: 1500 PYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535