BLASTX nr result
ID: Rehmannia24_contig00002140
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00002140
(2668 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 587 e-165
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 568 e-159
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 541 e-151
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 538 e-150
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 538 e-150
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 533 e-148
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 532 e-148
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 530 e-147
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 530 e-147
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 527 e-147
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 527 e-147
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 524 e-146
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 520 e-144
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 516 e-143
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 506 e-140
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 503 e-139
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 501 e-139
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 501 e-139
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 497 e-137
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 496 e-137
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 587 bits (1513), Expect = e-165
Identities = 333/891 (37%), Positives = 500/891 (56%), Gaps = 5/891 (0%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEID--EYAY 183
M +++E F GK DF + + KM+ +L+QQ + A+ G T ++K +I+ E A+
Sbjct: 1 MGTAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAH 60
Query: 184 SSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDE 363
S+IIL+L D+VLR+ + KSA +W KL+ LY SL + I+
Sbjct: 61 SAIILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEX 120
Query: 364 NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLK 543
+LD F K+I D++ D+ I+LL ++ SY+++K AI YGRD++T D V + L
Sbjct: 121 HLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILH 180
Query: 544 SKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXX 723
++EL + + ++ SGE +++RGRS+ R ++K N ++++
Sbjct: 181 ARELQKQ--EESKEESGEGLNIRGRSEKR---EKKGKNSKSRS------------KSKTK 223
Query: 724 XXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAVNSVKS 903
C+ C + GH+ ++CP+++ N K +V
Sbjct: 224 KFKCFICHKEGHFKKDCPDRRQNTVKK-----------------------------TVNR 254
Query: 904 NSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFESGY 1083
+ + + +LI A F K ++ E +V + N K C++LG G + +K G
Sbjct: 255 WTRVRSGYLIQGAL-FTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGI 313
Query: 1084 AYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCFA 1263
L++VR++P+L NLIS L+ G + +++ +GSL + K +N LY
Sbjct: 314 ERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIG 373
Query: 1264 ESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCDSCVLGK 1443
+++ T LWH+RLGH+S +GL+ L K G G+ L+ LPFC+ CV GK
Sbjct: 374 QTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGK 433
Query: 1444 QHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMK 1623
+VKF + Q+ L+Y+H+D+WGPS P+ GG RYFL++IDD+SRKVW++ +K
Sbjct: 434 ATRVKFAKAIHETQNQ----LDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLK 489
Query: 1624 NKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQ 1803
NKS+ F KFK WK L+E QT +++K LRTDNGLEF +N F++LC + GI RH+TV YTPQ
Sbjct: 490 NKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQ 549
Query: 1804 QNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPEFVFSG 1983
QNG+AERMNRT+LERVR ML+SSGLSK FW EA TA +LINRSPS L+ K P+ ++G
Sbjct: 550 QNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTG 609
Query: 1984 KQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKILISRD 2163
K D+ +LKVFGC A+VH K DKLEPR+ KC+FLGYP+GVKGY+LW+ + K +ISRD
Sbjct: 610 KAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRD 669
Query: 2164 VIFNESEFPCLTPSLPLCESEPAPNKVEQ---IPVSSNFDESENVHAEIENVPEHIPENE 2334
V FNE + TP+ + + +VE P S S+ EI H +NE
Sbjct: 670 VTFNEQDMSKQTPAKDVEGLDQLQFEVEHETLQPEKSKETSSKTAQEEI----VHERQNE 725
Query: 2335 PDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRFDDFHLTSYVF 2514
P +Y L RDR +R ++ P R+ +T++
Sbjct: 726 P-------------------------TQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFAL 760
Query: 2515 SVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPEN 2667
SV + I + EPK+Y+EA+ S +D+W+ A+ EEM+SL N TW LV KP++
Sbjct: 761 SVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKD 811
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 568 bits (1465), Expect = e-159
Identities = 325/895 (36%), Positives = 488/895 (54%), Gaps = 9/895 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTA----EKKAEIDEY 177
M++P + +E F DFS+W+ KMK +L+ Q + A+ E T +K+ +I
Sbjct: 1 MSLPRHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNR 60
Query: 178 AYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEI 357
A+S++IL+L DS+LR++ + K+A +W K++ L + SL I
Sbjct: 61 AHSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTI 120
Query: 358 DENLDVFTKLIQDIKLTGDKNI---DDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTV 528
+++D F K+I D++ G +N+ D+ LL+++P+SY + YGR T+TL+ V
Sbjct: 121 QDHIDTFNKIILDLE--GVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDV 178
Query: 529 VNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXX 708
L SKE+ + N ++GE + R +K + +N+N
Sbjct: 179 KASLSSKEI--QKNCELETSNGEGLMAR---------TEKKKDQKNKNQGKGHGKNQETA 227
Query: 709 XXXXXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAV 888
C+ C + GHYIR+C KK ++ + + A +S++ + + +DL
Sbjct: 228 DKKKKKRKCFYCRKEGHYIRDCFEKKKKES-QEKSGDAAVASDDGSDGYQSADLL----- 281
Query: 889 NSVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLK 1068
V SNS +W+IDS C+FH+ P K LF Y V V M N C ++GI C +
Sbjct: 282 --VASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIW-FCKR 338
Query: 1069 FES--GYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKAVKRN 1242
+L VRH P L NLIS L++ G + G +++ KG+ ++ K V N
Sbjct: 339 SRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNEN 398
Query: 1243 NLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFC 1422
LYV S+P D+T LWH RLGHMS KGL+ L K G G D + L FC
Sbjct: 399 GLYVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFC 458
Query: 1423 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 1602
++C+ GK H+ KF + + +L+Y H D WGP+ P+ G RYF+S+IDD+SRK
Sbjct: 459 ENCIFGKSHRSKFN----KGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRK 514
Query: 1603 VWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHK 1782
VW++++K K EKFK WK+L+ENQ+ ++K LRTDNGLEFC+ +F+ C ++GIKRHK
Sbjct: 515 VWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHK 574
Query: 1783 TVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKC 1962
TV +TPQQNG+AERMNRTL+++ R ML +S L + FW EAV+TA+YL+NRSPS + K
Sbjct: 575 TVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKT 634
Query: 1963 PEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF 2142
PE +++GK ++ NL+VFGC A++H KLE R+ K VF+GYP+GVKGY++W + +
Sbjct: 635 PEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG-- 692
Query: 2143 KILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHI 2322
K ++SRDV+F+E S+ L ES ++ P ++ SE +E + +
Sbjct: 693 KCIVSRDVVFHE--------SVLLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKS 744
Query: 2323 PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRFDDFHLT 2502
E E + NYQLARDR RR +R P R+ L
Sbjct: 745 SEKE-----AASDDERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLI 799
Query: 2503 SYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPEN 2667
+Y D + EP ++ EA++S + D+WL AM +EM SL N TW L+P P N
Sbjct: 800 AYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGN 854
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 541 bits (1394), Expect = e-151
Identities = 318/890 (35%), Positives = 473/890 (53%), Gaps = 6/890 (0%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEIDEYAYSS 189
M+ + ++ F G+ FS+WQ KM+ +L QQ + +S T E A ++E A+S+
Sbjct: 1 MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEM-AILEEKAHST 59
Query: 190 IILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDENL 369
I+L L+D V+ +V ++A LW KL+ LY SL + ++ E+L
Sbjct: 60 IMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHL 119
Query: 370 DVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKSK 549
+ L+ +++ K D+ ++LL ++P S+ + + G+DT++L+ V + L S+
Sbjct: 120 EQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSR 179
Query: 550 ELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXXXX 729
EL K N + R + G ++ +
Sbjct: 180 ELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAK----------------PDD 223
Query: 730 XCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGE-IFMVSDLCEMHAVNSVKSN 906
C C E GH+ +CP KK ++ A +A N E I +V+D H+
Sbjct: 224 VCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHS------- 276
Query: 907 SVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFESGYA 1086
+ W++DS ++H+ P + F++Y +V +SMAN C+V+G G I ++ G
Sbjct: 277 ----DVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSF 332
Query: 1087 YTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCFAE 1266
TL VRHVP + NLIS + L++ G +GV+++ KGS +I K V R LY
Sbjct: 333 CTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGS 392
Query: 1267 SMPXXXXXXXXXXXDK--TDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCDSCVLG 1440
++ K T LWH RLGHM +G++IL K + L FC+ CV G
Sbjct: 393 TVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFG 452
Query: 1441 KQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 1620
K H+ KFP + + L+Y+H+D WGP + GG R+F+SIIDD+SR WV++M
Sbjct: 453 KLHRNKFPKAIHRTKGT----LDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMM 508
Query: 1621 KNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTP 1800
K+KS+ F+KFK WK L+ENQTGK+IK LRTDNGLEFC + FD C + GI RH+TV TP
Sbjct: 509 KHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTP 568
Query: 1801 QQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPEFVFS 1980
QQNGVAERMN+TLLER R ML+++GL +RFW EAV TA YLINR P ++ K P ++S
Sbjct: 569 QQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWS 628
Query: 1981 GKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKILISR 2160
GK D+SNLK FGC A+ H KLEPR+KK VF+GY +GVKG+R+W E ++++SR
Sbjct: 629 GKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSR 686
Query: 2161 DVIFNESE-FPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPE-HIPENE 2334
+V+F+ES + E+ +VE + + D E + E E IPE+
Sbjct: 687 NVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESM 746
Query: 2335 PDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRR-NIRQPSRFDDFHLTSYV 2511
P +H +A+DR RR +R P+R+ + Y
Sbjct: 747 PSDIHQ---------------------------SIAQDRPRRVGVRPPTRYGFEDMVGYA 779
Query: 2512 FSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKP 2661
V + +D SEP +Y+EA+ S +S++W AM +EM SLH N TW LV +P
Sbjct: 780 LQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQP 829
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 538 bits (1386), Expect = e-150
Identities = 326/902 (36%), Positives = 481/902 (53%), Gaps = 22/902 (2%)
Frame = +1
Query: 25 YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI--DEYAYSSIIL 198
++L N T FS+WQ KM+GIL Q Y +G++ EI D+ A + I L
Sbjct: 3 FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQL 62
Query: 199 NLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDENLDVF 378
+L + +L++ K++ LW KL+ + L S + ++ F
Sbjct: 63 HLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEF 122
Query: 379 TKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKSKELD 558
K++ D+ K D+ ++LL ++P SY++ + I RD +TL V + L++KE
Sbjct: 123 KKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-K 181
Query: 559 LKV---NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXXXX 729
+K+ N G + GE +HVRGR+++R N++ D
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKK 230
Query: 730 XCYKCGEVGHYIRECPN-----KKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAVNS 894
C C H I EC +K ++ K A+ A+S ++ G+ +V C
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEV-KNCHVSMANEKKCEVLGIGDICLKF 1071
+EW++DSAC+FH+ +N FSSY V K V M ++ C ++GIG + +K
Sbjct: 287 -------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKT 339
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNL 1248
+ G TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + L
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399
Query: 1249 YV---CFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPF 1419
YV C KT+LWH RLGHMS G+ L K S + F
Sbjct: 400 YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459
Query: 1420 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 1599
C+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L+IIDD+SR
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 515
Query: 1600 KVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRH 1779
KVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++ C + GI RH
Sbjct: 516 KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575
Query: 1780 KTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGK 1959
T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINRSPS+PL K
Sbjct: 576 HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635
Query: 1960 CPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPG 2139
P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW E G
Sbjct: 636 TPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG 694
Query: 2140 FKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
K +SR V+FNES T SLP SE P K E + +H ++E+V ++
Sbjct: 695 -KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMHMQVEHVDDY 737
Query: 2320 I-----PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR- 2481
P +E D N +A+ +++R + P R
Sbjct: 738 TGVQVEPVHEQD---DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794
Query: 2482 FDDFHLTSYVFSVFDSIDN-SEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPK 2658
++ +L+ Y S + ++N EP +Y+EA++ +S+ W++AM+EEM SL N+TW +VP
Sbjct: 795 IEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPL 854
Query: 2659 PE 2664
P+
Sbjct: 855 PK 856
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 538 bits (1386), Expect = e-150
Identities = 327/902 (36%), Positives = 480/902 (53%), Gaps = 22/902 (2%)
Frame = +1
Query: 25 YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI--DEYAYSSIIL 198
++L N T FS+WQ KM+GIL Q Y +G++ EI D+ A + I L
Sbjct: 3 FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQL 62
Query: 199 NLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDENLDVF 378
+L + +L++ K++ LW KL+ + L S + ++ F
Sbjct: 63 HLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEF 122
Query: 379 TKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKSKELD 558
K++ D+ K D+ ++LL ++P SY++ + I RD +TL V + L++KE
Sbjct: 123 KKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-K 181
Query: 559 LKV---NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXXXX 729
+K+ N G + GE +HVRGR+++R N++ D
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKK 230
Query: 730 XCYKCGEVGHYIRECPN-----KKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAVNS 894
C C H I EC +K ++ K A+ A+S ++ G+ +V C
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEV-KNCHVSMANEKKCEVLGIGDICLKF 1071
+EW++DSAC+FH+ +N FSSY V K V M ++ C ++GIG + +K
Sbjct: 287 -------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKT 339
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNL 1248
+ G TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K V L
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKL 399
Query: 1249 YV---CFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPF 1419
YV C KT+LWH RLGHMS G+ L K S + F
Sbjct: 400 YVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459
Query: 1420 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 1599
C+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L+IIDD+SR
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 515
Query: 1600 KVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRH 1779
KVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++ C + GI RH
Sbjct: 516 KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575
Query: 1780 KTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGK 1959
T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINRSPS+PL K
Sbjct: 576 HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635
Query: 1960 CPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPG 2139
P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW E G
Sbjct: 636 TPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG 694
Query: 2140 FKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
K +SR V+FNES T SLP SE P K E + +H ++E+V +
Sbjct: 695 -KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMHMQVEHVDDD 737
Query: 2320 I-----PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR- 2481
P +E D N +A+ +++R + P R
Sbjct: 738 TGVQVEPVHEQD---DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794
Query: 2482 FDDFHLTSYVFSVFDSIDN-SEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPK 2658
++ +L+ Y S + ++N EP +Y+EA++ +S+ W++AM+EEM SL N+TW +VP
Sbjct: 795 IEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPL 854
Query: 2659 PE 2664
P+
Sbjct: 855 PK 856
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 533 bits (1374), Expect = e-148
Identities = 319/897 (35%), Positives = 492/897 (54%), Gaps = 10/897 (1%)
Frame = +1
Query: 4 VKMAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEK-DTAEKKAEIDEYA 180
+ MA Y+L T FS+WQ KM+ +L QQ + A+SG D + + + D A
Sbjct: 206 IPMASLKYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKA 265
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
S I L+LS+++L++V + + A LW KL+++ L S + +
Sbjct: 266 MSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVM 325
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++L F ++I D++ K ++ ++LL ++P SY++ + I Y RDT+TL V + L
Sbjct: 326 DHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 385
Query: 541 KSKELDLK-VNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
KE K V G + E + V GR Q + N +NQ+
Sbjct: 386 HVKEKMKKMVPSEGSNSQAEGLIVWGRQQEK--------NTKNQSRDKSSSSYRGRSKSR 437
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSD-LCEMHAVNS 894
C C GH I EC K +++ + + E G+ +V+D + + +
Sbjct: 438 GRYKSCKYCKRDGHDIFECW-KLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVA 496
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFE 1074
+ ++W++++AC +HM P ++ F++Y V+ V M ++ CEV GIG + +K
Sbjct: 497 YAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMF 556
Query: 1075 SGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLY 1251
G TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY
Sbjct: 557 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 616
Query: 1252 VCFAESM--PXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCD 1425
++ D T+LWH RLGHM+ GL L K G + L FC+
Sbjct: 617 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 676
Query: 1426 SCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKV 1605
C+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+SRKV
Sbjct: 677 HCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 732
Query: 1606 WVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKT 1785
W + +K+K F+ FK WKT++E QT +++K LRTDNG+EFC+ +F + C GI RH T
Sbjct: 733 WPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT 792
Query: 1786 VPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCP 1965
VP+TPQQNGVAERMNRT++ + R +L+++GL K+FW EAV TA YLINRSPS + K P
Sbjct: 793 VPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTP 852
Query: 1966 EFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFK 2145
V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY+LW K
Sbjct: 853 IEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--K 910
Query: 2146 ILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
++ISR+V+F+ES PS +P+ E A +VE + S + E E+V A ++ P
Sbjct: 911 VVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDV-AINQDEPVI 969
Query: 2320 IPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRF-DDFH 2496
N P+ +A+DR +RNI+ P R+ ++ +
Sbjct: 970 EDSNSSIVQQSPKR------------------------SIAKDRPKRNIKPPQRYIEEAN 1005
Query: 2497 LTSYVFSVFDSID-NSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
+ +Y SV + I+ N+EP +Y EA+ S + + W+ AM++EM SL N+TW LV P+
Sbjct: 1006 IVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 1062
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 532 bits (1371), Expect = e-148
Identities = 324/902 (35%), Positives = 481/902 (53%), Gaps = 22/902 (2%)
Frame = +1
Query: 25 YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI--DEYAYSSIIL 198
++L N T FS+WQ M+GIL Q Y +G++ EI D+ A + I L
Sbjct: 5 FDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQL 64
Query: 199 NLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDENLDVF 378
+L + +L++ K++ LW KL+ + L S + ++ F
Sbjct: 65 HLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEF 124
Query: 379 TKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKSKELD 558
K++ D+ K D+ ++LL ++P SY++ + I RD +TL V + L++KE
Sbjct: 125 KKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-K 183
Query: 559 LKV---NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXXXX 729
+K+ N G + GE +HVRGR++++ N++ D
Sbjct: 184 MKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSK-----------SKPPGNKK 232
Query: 730 XCYKCGEVGHYIRECPN-----KKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAVNS 894
C C H I EC +K ++ K A+ A S ++ G+ +V C
Sbjct: 233 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG---- 288
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEV-KNCHVSMANEKKCEVLGIGDICLKF 1071
+EW++DSAC+FH+ +N FSSY V K V M ++ C ++GIG + +K
Sbjct: 289 -------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKT 341
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNL 1248
+ G TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + L
Sbjct: 342 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 401
Query: 1249 YVCFAESMPXXXXXXXXXXXD---KTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPF 1419
YV ++P D KT+LWH RLGHMS G+ L K S + F
Sbjct: 402 YVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKF 461
Query: 1420 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 1599
C+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L+IIDD+SR
Sbjct: 462 CEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 517
Query: 1600 KVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRH 1779
KVW + +K+K D F FKNWK +IE QT +++K L TDNG EFC++ F++ C + GI RH
Sbjct: 518 KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRH 577
Query: 1780 KTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGK 1959
T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINRSPS+PL K
Sbjct: 578 HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 637
Query: 1960 CPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPG 2139
P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW E G
Sbjct: 638 TPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG 696
Query: 2140 FKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
K +SR V+FNES T SLP SE P K E + +H ++E+V +
Sbjct: 697 -KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMHMQVEHVDDD 739
Query: 2320 I-----PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR- 2481
P +E D N + +A+ +++R + P R
Sbjct: 740 TGVQVEPVDEQD---DHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRL 796
Query: 2482 FDDFHLTSYVFSVFDSIDN-SEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPK 2658
++ +L+ Y S + ++N EP +Y+EA++ +S+ W++AM+EEM SL N+TW +VP
Sbjct: 797 IEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPL 856
Query: 2659 PE 2664
P+
Sbjct: 857 PK 858
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 530 bits (1366), Expect = e-147
Identities = 324/902 (35%), Positives = 479/902 (53%), Gaps = 22/902 (2%)
Frame = +1
Query: 25 YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI--DEYAYSSIIL 198
++L N T FS+ Q KM+GIL Q Y +G++ EI D+ A + I L
Sbjct: 3 FDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQL 62
Query: 199 NLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDENLDVF 378
+L + +L++ K++ LW KL+ + L S + ++ F
Sbjct: 63 HLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEF 122
Query: 379 TKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKSKELD 558
K++ D+ K D+ ++LL ++P SY++ + I RD +TL V + L++KE
Sbjct: 123 KKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-K 181
Query: 559 LKV---NKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXXXX 729
+K+ N G + GE +HVRGR+++R N++ D
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKK 230
Query: 730 XCYKCGEVGHYIRECPN-----KKGNQNFKNDQANMASSSENVGEIFMVSDLCEMHAVNS 894
C C H I EC +K ++ K A+ A+S ++ G+ +V C
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEV-KNCHVSMANEKKCEVLGIGDICLKF 1071
+EW++DSAC+FH+ +N FSSY V K V M ++ C ++GIG + +K
Sbjct: 287 -------HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKT 339
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNL 1248
+ G TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + L
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399
Query: 1249 YV---CFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPF 1419
YV C KT+LWH RLGHMS G+ L K S + F
Sbjct: 400 YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459
Query: 1420 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 1599
C+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L++IDD+SR
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTVIDDYSR 515
Query: 1600 KVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRH 1779
KVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++ C + GI RH
Sbjct: 516 KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575
Query: 1780 KTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGK 1959
T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINRSPS+PL K
Sbjct: 576 HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635
Query: 1960 CPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPG 2139
P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW E G
Sbjct: 636 TPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG 694
Query: 2140 FKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
K +SR V+FNES T SLP SE P K E + +H ++E+V +
Sbjct: 695 -KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMHMQVEHVDDD 737
Query: 2320 I-----PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR- 2481
P +E D N +A+ +++R + P R
Sbjct: 738 TGVQVEPVHEQD---DHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRL 794
Query: 2482 FDDFHLTSYVFSVFDSIDN-SEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPK 2658
++ +L+ Y S + ++N EP +Y+EA++ +S+ W++AM+EEM SL N+TW +VP
Sbjct: 795 IEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPL 854
Query: 2659 PE 2664
P+
Sbjct: 855 PK 856
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 530 bits (1366), Expect = e-147
Identities = 312/871 (35%), Positives = 462/871 (53%), Gaps = 28/871 (3%)
Frame = +1
Query: 136 EKDTAEKKAEID--EYAYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXX 309
+K A++ A ++ + A + I LN++D VLRK+ K+A WE L L+ SLP
Sbjct: 33 KKRDADEVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVY 92
Query: 310 XXXXXXXXXXDLNKEIDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSA 489
NK+IDEN+D F K++ D+ D+ I+LL+++P Y +
Sbjct: 93 TQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVET 152
Query: 490 IKYG--RDTITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQ 663
+KY R+ + LD V+ + KE +L N + E RGR + NQ ++
Sbjct: 153 MKYSNSREKLRLDDVMVAARDKERELSQNN---RPVVEGHFARGRPDGKNNNQGNKGKNR 209
Query: 664 NQNFHXXXXXXXXXXXXXXXXXXCYKCGEVGHYIREC-----PNKKGNQNFKNDQANMAS 828
+++ C+ CG+ GH+ ++C NK Q N ++++A
Sbjct: 210 SRS------------KSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAK 257
Query: 829 SSE--NVGEIFMVSDLCEMHAVNSVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKN 1002
S+E N + + +D ++ I NEW++D+ C+FHM+P K+ F + E+ +
Sbjct: 258 STEAFNPAMVLLATD-------ETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSS 310
Query: 1003 CHVSMANEKKCEVLGIGDICLKFESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFG 1182
+V M N+ V GIG I ++ G L +VR++P++ NLIS LE+ G +
Sbjct: 311 GYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQ 370
Query: 1183 NGVMKILKGSLVIFKAVKRNNLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGL 1362
+G++KI+KG I K KR+ LY+ + D+T LWH RLGHMS KG+
Sbjct: 371 DGILKIVKGCSTILKGQKRDTLYILDGVT-EEGESHSSAEVKDETALWHSRLGHMSQKGM 429
Query: 1363 EILHKAGCFGSDVLSCLPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSS 1542
EIL K GC +V+ L FC+ CV GKQH+V F P Q V + L Y+H+D+WG
Sbjct: 430 EILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA----PAQHVTKEKLAYVHSDLWGSPH 485
Query: 1543 EPTQGGN-RYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNG 1719
P GN +YF+S +DD+SRKVW++ ++ K + FEKF WK ++ENQ+ +++K LRTDNG
Sbjct: 486 NPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNG 545
Query: 1720 LEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGE 1899
LE+CN+ F+ C E GI RHKT YTPQQNG+AER+NRT++++VRSML+ SG+ K+FW E
Sbjct: 546 LEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAE 605
Query: 1900 AVHTAAYLINRSPSVPLKGKCPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCV 2079
A TA YLINRSPS + PE ++G D S+L+ FGC A++H KL PRSKK +
Sbjct: 606 AASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGI 665
Query: 2080 FLGYPEGVKGYRLWLRGEPGFKILISRDVIFNE----------SEFPCLTPSLPLCESEP 2229
F YPEGVKGY++W+ + K +ISR+VIF E S+ L P
Sbjct: 666 FTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNP 723
Query: 2230 APNKVE------QIPVSSNFDESENVHAEIENVPEHIPENEPDFVHMPENXXXXXXXXXX 2391
N E +SN E+ H + N P H + E +
Sbjct: 724 DMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESE----------------- 766
Query: 2392 XXXXXXXXXXXGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFDSIDNSEPKSYEEALK 2571
YQL RDR RR I+ ++++ ++ + + D EPKSY+EAL
Sbjct: 767 -EEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDD-GKPEPKSYQEALL 824
Query: 2572 SKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
+ ++W AM EEM S+ N+TW LV KPE
Sbjct: 825 DPDWEKWNAAMKEEMVSMSKNHTWDLVTKPE 855
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 527 bits (1358), Expect = e-147
Identities = 313/897 (34%), Positives = 487/897 (54%), Gaps = 10/897 (1%)
Frame = +1
Query: 4 VKMAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGE-KDTAEKKAEIDEYA 180
+ MA Y+L + T FS+WQ KM+ +L QQ + A+SG +D + + + D A
Sbjct: 34 IPMASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDRKA 93
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
S I L+LS+++L++V + ++A LW KL+++ L S + +
Sbjct: 94 MSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVM 153
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++L F +++ D++ K ++ ++LL ++P SY++ + I Y DT+ L V + L
Sbjct: 154 DHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDAL 213
Query: 541 KSKELDLK-VNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
+KE K V G + E + VRGR Q + N +NQ+
Sbjct: 214 HAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK--------NTKNQSRDKSSSSYRGRSKSR 265
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSD-LCEMHAVNS 894
C C GH I EC K +++ + + E G+ +V+D + + +
Sbjct: 266 GRYKSCKYCKRDGHDISECW-KLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVA 324
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFE 1074
+ ++W++D+A T+HM P ++ F++Y ++ V M ++ CEV GIG + +K
Sbjct: 325 YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384
Query: 1075 SGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLY 1251
GY TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY
Sbjct: 385 DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444
Query: 1252 VCFAESM--PXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCD 1425
++ D T+LWH RLGHMS GL L K + L FC+
Sbjct: 445 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504
Query: 1426 SCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKV 1605
C+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+SRKV
Sbjct: 505 HCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560
Query: 1606 WVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKT 1785
W + +K+K F+ FK WKT++E QT K++K LRTDNG+EFC+ +F + C GI H T
Sbjct: 561 WPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYT 620
Query: 1786 VPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCP 1965
VP+TPQQNGVAERMN ++ + R ML+++ L K+FW EAV T YLINRSPS K P
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680
Query: 1966 EFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFK 2145
V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY+LW K
Sbjct: 681 IEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--K 738
Query: 2146 ILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
++ISR+V+F+ES PS +P+ E A +VE + S + E ENV I
Sbjct: 739 VVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENV--AINQDAPV 796
Query: 2320 IPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRF-DDFH 2496
I +++ V +A+D+ +RNI+ P R+ ++ +
Sbjct: 797 IEDSDSSIVQQSSKR-----------------------SIAKDKPKRNIKPPRRYIEEAN 833
Query: 2497 LTSYVFSVFDSID-NSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
+ +Y SV + I+ N+EP +Y EA+ S + + W+ AM++EM SL N+TW V P+
Sbjct: 834 IVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPK 890
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 527 bits (1358), Expect = e-147
Identities = 313/897 (34%), Positives = 487/897 (54%), Gaps = 10/897 (1%)
Frame = +1
Query: 4 VKMAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGE-KDTAEKKAEIDEYA 180
+ MA Y+L + T FS+WQ KM+ +L QQ + A+SG +D + + + D A
Sbjct: 34 IPMASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDRKA 93
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
S I L+LS+++L++V + ++A LW KL+++ L S + +
Sbjct: 94 MSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVM 153
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++L F +++ D++ K ++ ++LL ++P SY++ + I Y DT+ L V + L
Sbjct: 154 DHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDAL 213
Query: 541 KSKELDLK-VNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
+KE K V G + E + VRGR Q + N +NQ+
Sbjct: 214 HAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK--------NTKNQSRDKSSSSYRGRSKSR 265
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSD-LCEMHAVNS 894
C C GH I EC K +++ + + E G+ +V+D + + +
Sbjct: 266 GRYKSCKYCKRDGHDISECW-KLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVA 324
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFE 1074
+ ++W++D+A T+HM P ++ F++Y ++ V M ++ CEV GIG + +K
Sbjct: 325 YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384
Query: 1075 SGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLY 1251
GY TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY
Sbjct: 385 DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444
Query: 1252 VCFAESM--PXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCD 1425
++ D T+LWH RLGHMS GL L K + L FC+
Sbjct: 445 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504
Query: 1426 SCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKV 1605
C+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+SRKV
Sbjct: 505 HCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560
Query: 1606 WVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKT 1785
W + +K+K F+ FK WKT++E QT K++K LRTDNG+EFC+ +F + C GI H T
Sbjct: 561 WPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYT 620
Query: 1786 VPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCP 1965
VP+TPQQNGVAERMN ++ + R ML+++ L K+FW EAV T YLINRSPS K P
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680
Query: 1966 EFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFK 2145
V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY+LW K
Sbjct: 681 IEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--K 738
Query: 2146 ILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEH 2319
++ISR+V+F+ES PS +P+ E A +VE + S + E ENV I
Sbjct: 739 VVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENV--AINQDAPV 796
Query: 2320 IPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRF-DDFH 2496
I +++ V +A+D+ +RNI+ P R+ ++ +
Sbjct: 797 IEDSDSSIVQQSSKR-----------------------SIAKDKPKRNIKPPRRYIEEAN 833
Query: 2497 LTSYVFSVFDSID-NSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
+ +Y SV + I+ N+EP +Y EA+ S + + W+ AM++EM SL N+TW V P+
Sbjct: 834 IVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPK 890
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 524 bits (1349), Expect = e-146
Identities = 322/896 (35%), Positives = 478/896 (53%), Gaps = 11/896 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAE---KKAEIDEYA 180
MA Y+L + KT FS+WQ KM+ +L Q +G+K T E + D A
Sbjct: 1 MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKA 60
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
S I L+LS+ +L++V Q K+A LW KL+ + L S + +
Sbjct: 61 LSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVL 120
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++ VF +++ D+ + D+ ++LL ++P SY + + I RD +TL V L
Sbjct: 121 NHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEAL 180
Query: 541 KSKE-LDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
+++E + V + GE + V+GRS+ R N +
Sbjct: 181 QNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKSKSR----------GRSKS 230
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKND-QANMASSSENVGEIFMVSDLCEMHAVNS 894
C C + H+I+EC + + K+D +A++ +S++N S C +
Sbjct: 231 RGKKFCKYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSD-----SGDCLVVFAGC 285
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHV-SMANEKKCEVLGIGDICLKF 1071
V S+ +EW++D+AC+FH+ ++ FSSY V+N V M N+ E++GIG + +K
Sbjct: 286 VASH----DEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKT 341
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLV-IFKAVKRNNL 1248
G TLK+VRH+P + NLIS + L+ +G + GV+K+ KGSLV + + NL
Sbjct: 342 HDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 401
Query: 1249 YVCFAESMPXXXXXXXXXXXD--KTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFC 1422
YV ++ + KT+LWH RLGHMS G+ L K + FC
Sbjct: 402 YVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 461
Query: 1423 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 1602
+ CV GK +VKF S + IL+Y+HAD+WGPS +P+ GG RY L+IIDD+SRK
Sbjct: 462 ERCVFGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517
Query: 1603 VWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHK 1782
VW + +K+K D F FK WK +IE QT K +K LRTDN EFC++ FD+ C + GI RH
Sbjct: 518 VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHH 577
Query: 1783 TVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKC 1962
T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA +TA YLINRSPS+PL K
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637
Query: 1963 PEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF 2142
P ++SG D+S L+VFGC A+ H +KLEPR+ KC+FLGY GVKGY+LW
Sbjct: 638 PIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLW--NPETN 695
Query: 2143 KILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHI 2322
K +SR V+FNES SLP + IP S+ +E + V ++ EH+
Sbjct: 696 KTFMSRSVVFNESVM--FNDSLP----------TDVIPGGSD-EEQQYVSVQV----EHV 738
Query: 2323 PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR-FDDFHL 2499
+ E + V N + +A RT+R+ P R ++ +
Sbjct: 739 DDQETEIVGNDVNDTVQHSPPVLQPQ---------DEPIAHRRTKRSCGAPVRLIEECDM 789
Query: 2500 TSYVFSVFDSIDNS-EPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
Y FS + ++N+ EP +Y EA+ S + ++W++AM EEM SL N TW LV P+
Sbjct: 790 VYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPK 845
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 520 bits (1339), Expect = e-144
Identities = 325/896 (36%), Positives = 482/896 (53%), Gaps = 11/896 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI---DEYA 180
MA Y+L + KT FS+WQ KM+ +L Q +G+K T E AE D A
Sbjct: 1 MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKA 60
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
S I L+LS+ +L++V Q K+A LW KL+ + L S + +
Sbjct: 61 LSLIQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVL 120
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++ VF +++ D+ + D+ ++LL ++P SY++ + I RD +TL V L
Sbjct: 121 NHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEAL 180
Query: 541 KSKE-LDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
+++E + V + GE + VRGRS+ R N D+ ++Q+
Sbjct: 181 QNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSN-DHDKSQS---------RGRSKS 230
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKND-QANMASSSENVGEIFMVSDLCEMHAVNS 894
C C + H+I EC + + K+D +A++ +S+EN S C +
Sbjct: 231 RGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAGY 285
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHV-SMANEKKCEVLGIGDICLKF 1071
V S+ +EW++D+AC+FH+ ++ FSSY V+N V M ++ E++GIG + +K
Sbjct: 286 VASH----DEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKT 341
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLV-IFKAVKRNNL 1248
G TLK+VRH+P + NLIS + L+ +G + GV+K+ KGSLV + + NL
Sbjct: 342 HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 401
Query: 1249 YVCFAESMPXXXXXXXXXXXD--KTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFC 1422
YV ++ + KT+LWH RLGHMS G+ L K + FC
Sbjct: 402 YVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 461
Query: 1423 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 1602
+ CV GK +VKF S + IL+Y+HAD+WGPS +P+ GG RY L+IIDD+SRK
Sbjct: 462 EHCVFGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517
Query: 1603 VWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHK 1782
W + +K+K D F FK K +IE QT K +K L TDNG EFC++ FD+ C + GI RH
Sbjct: 518 EWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHH 577
Query: 1783 TVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKC 1962
T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA +TA YLINRSPS+PL K
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637
Query: 1963 PEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF 2142
P ++SG D+S L+VFGC A+ H KLEPR+ KC+FLGY GVKGY+LW
Sbjct: 638 PIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETN 695
Query: 2143 KILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHI 2322
K +SR+VIFN EF SLP + IP S+ +E + V ++ EH+
Sbjct: 696 KTFMSRNVIFN--EFVMFNDSLP----------TDVIPGGSD-EEQQYVSVQV----EHV 738
Query: 2323 PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR-FDDFHL 2499
+ E + V N + +A RT+R+ P R ++ +
Sbjct: 739 DDQETEIVGNDVNDTVQHSPSVLQPQ---------DEPIAHRRTKRSCGAPVRLIEECDM 789
Query: 2500 TSYVFSVFDSIDNS-EPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
Y FS + ++N+ EP +Y EA+ S + ++W++A+ EEM SL N TW LV P+
Sbjct: 790 VYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPK 845
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 516 bits (1330), Expect = e-143
Identities = 308/912 (33%), Positives = 474/912 (51%), Gaps = 26/912 (2%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEIDEY---- 177
M+ +E F+G+ D+++W++K+ L + + + + T EKK+ +DE
Sbjct: 1 MSTARIEVEKFDGRGDYTMWKEKL---LAHMDILGLNTALKESESTGEKKSVLDESDEDY 57
Query: 178 ----------------AYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXX 309
A S+I+L+++D VLRK+ + +A A+ L +LY +LP+
Sbjct: 58 EEKLEKFEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIY 117
Query: 310 XXXXXXXXXXDLNKEIDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSA 489
N ++ N+D F ++I D++ D+ I+LL A+P+++ +K
Sbjct: 118 PKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDT 177
Query: 490 IKY--GRDTITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQ 663
+KY G+ +TLD V + SKEL+L K + E ++V+ +++++ +QK
Sbjct: 178 LKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKG 237
Query: 664 NQNFHXXXXXXXXXXXXXXXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENV 843
+ C+ CGE GH+ CPN+ Q FK Q SS
Sbjct: 238 KKG-------------KSKKKPGCWTCGEEGHFRSSCPNQNKPQ-FKQSQVVKGESSGGK 283
Query: 844 GEIFMVSDLCEMHAVNSVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMAN 1023
G + + A++S + + +++EW++D+ C++HM+ + F ++E V M N
Sbjct: 284 GNLAEAAGYYVSEALSSTEVH--LEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGN 341
Query: 1024 EKKCEVLGIGDICLKFESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKIL 1203
+ V G+G I +K G L NVR++PD+ NL+S E G + +G+++I
Sbjct: 342 KTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIK 401
Query: 1204 KGSLVIFKAVKRNNLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAG 1383
G+ V+ + + LY+ + + D T LWH+RL HMS K +EIL + G
Sbjct: 402 AGNQVLLTGRRYDTLYLLNWKPVASESLAVVKRADD-TVLWHQRLCHMSQKNMEILVRKG 460
Query: 1384 CFGSDVLSCLPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGN 1563
+S L C+ C+ GK + F ++ + + LEY+H+D+WG P G
Sbjct: 461 FLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTK----EKLEYIHSDLWGAPFVPLSLGK 516
Query: 1564 -RYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNL 1740
+YF+SIIDDF+RKVWV+ MK K + FEKF W L+ENQT +R+KTLRTDNGLEFCN L
Sbjct: 517 CQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKL 576
Query: 1741 FDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAY 1920
FD C GI RH+T YTPQQNGVAERMNRT++E+VRSML+ SGL KRFW EA HT
Sbjct: 577 FDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVL 636
Query: 1921 LINRSPSVPLKGKCPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEG 2100
LIN++PS L + P+ +SG +S L+ +GC AFVH KLEPR+KK V +GYP G
Sbjct: 637 LINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVG 696
Query: 2101 VKGYRLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFD-- 2274
VKGY++W+ E K ++SR++IF E+ + L + + + +Q FD
Sbjct: 697 VKGYKVWILDER--KCVVSRNIIFQEN---AVYKDLMQRQENVSTEEDDQTGSYLEFDLE 751
Query: 2275 -ESENVHAEIENVPEHIPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDR 2451
E + + + + IP E V P +Y L RDR
Sbjct: 752 AERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQSPL------SYHLVRDR 805
Query: 2452 TRRNIRQPSRFDDFHLTSYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHV 2631
+R IR P RFDD + + + EP++Y +A N D+W AM+EE++S
Sbjct: 806 DKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEK 865
Query: 2632 NNTWVLVPKPEN 2667
NNTW +V +PEN
Sbjct: 866 NNTWTIVTRPEN 877
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 506 bits (1302), Expect = e-140
Identities = 319/896 (35%), Positives = 468/896 (52%), Gaps = 11/896 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDTAEKKAEI---DEYA 180
MA Y+L + KT FS+WQ KM+ IL Q +G+K + E AE D A
Sbjct: 1 MASIKYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKA 60
Query: 181 YSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEID 360
I L+LS+ +L++V Q K+A LW KL+ + L S + +
Sbjct: 61 LLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVL 120
Query: 361 ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGL 540
++ VF +++ D+ + D+ ++LL ++P SY++ + I RD +TL V L
Sbjct: 121 NHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEAL 180
Query: 541 KSKE-LDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXX 717
+++E + V + GE + VRGRS+ R N D ++Q+
Sbjct: 181 QNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSS-DRDKSQS---------RGRSKS 230
Query: 718 XXXXXCYKCGEVGHYIRECPNKKGNQNFKND-QANMASSSENVGEIFMVSDLCEMHAVNS 894
C C + H+I EC + + K+D +A++ +S+EN S C +
Sbjct: 231 RGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAGC 285
Query: 895 VKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHV-SMANEKKCEVLGIGDICLKF 1071
V S+ +EW++D+AC+FH+ ++ FSSY V+N V M ++ E++GIG + +K
Sbjct: 286 VASH----DEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKT 341
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLV-IFKAVKRNNL 1248
G TLK+VRH+P + NLIS + L+ +G + GV+K+ KGSLV + + NL
Sbjct: 342 HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANL 401
Query: 1249 YVCFAESMPXXXXXXXXXXXD--KTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFC 1422
YV ++ + KT+LWH RLGHMS G+ L K + FC
Sbjct: 402 YVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFC 461
Query: 1423 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 1602
+ CV GK +VKF S + IL+Y+H D+WGPS + GG RY L+IIDD+SRK
Sbjct: 462 EHCVFGKHKRVKFNTSVHRTKG----ILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRK 517
Query: 1603 VWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHK 1782
VW + +K+K D F FK WK IE QT K +K LRTDNG EFC++ FD+ C + GI RH
Sbjct: 518 VWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHH 577
Query: 1783 TVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKC 1962
T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA +TA YLINRSPS+PL K
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637
Query: 1963 PEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF 2142
P V+SG D+S L+VFGC A+ H KLEPR+ KC+FLGY GVK Y+LW
Sbjct: 638 PIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLW--NPETN 695
Query: 2143 KILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHI 2322
K + R V+FN+S SLP + IP S+ + +
Sbjct: 696 KTFMRRSVVFNKSVM--FNDSLP----------TDVIPGGSDEE-------------QQY 730
Query: 2323 PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSR-FDDFHL 2499
P++EP +A RT+R+ P R ++ +
Sbjct: 731 PQDEP---------------------------------IAHRRTKRSCGAPVRLIEECDM 757
Query: 2500 TSYVFSVFDSIDNS-EPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
Y FS + ++N+ EP +Y EA+ S + ++W++AM EEM SL N TW LV P+
Sbjct: 758 VYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPK 813
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 503 bits (1295), Expect = e-139
Identities = 305/863 (35%), Positives = 470/863 (54%), Gaps = 10/863 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEK-DTAEKKAEIDEYAYS 186
MA Y+L T FS+WQ KM+ +L QQ + A+SG D + + + D A S
Sbjct: 1 MASLKYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMS 60
Query: 187 SIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDEN 366
I L+LS+++L++V + + A LW KL+++ L S + + ++
Sbjct: 61 YIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDH 120
Query: 367 LDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLKS 546
L F ++I D++ K ++ ++LL ++P SY++ + I Y RDT+TL V + L
Sbjct: 121 LSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHV 180
Query: 547 KELDLK-VNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXX 723
KE K V G + E + V GR Q + N +NQ+
Sbjct: 181 KEKMKKMVPSEGSNSQAEGLIVWGRQQEK--------NTKNQSRDKSSSSYRGRSKSRGR 232
Query: 724 XXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVSD-LCEMHAVNSVK 900
C C GH I EC K +++ + + E G+ +V+D + + +
Sbjct: 233 YKSCKYCKRDGHDIFECW-KLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYA 291
Query: 901 SNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKFESG 1080
+ ++W++++AC +HM P ++ F++Y V+ V M ++ CEV GIG + +K G
Sbjct: 292 GCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDG 351
Query: 1081 YAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLYVC 1257
TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY
Sbjct: 352 CIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHL 411
Query: 1258 FAESM--PXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCDSC 1431
++ D T+LWH RLGHM+ GL L K G + L FC+ C
Sbjct: 412 RGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHC 471
Query: 1432 VLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWV 1611
+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+SRKVW
Sbjct: 472 IFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWP 527
Query: 1612 FLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKTVP 1791
+ +K+K F+ FK WKT++E QT +++K LRTDNG+EFC+ +F + C GI RH TVP
Sbjct: 528 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 587
Query: 1792 YTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPEF 1971
+TPQQNGVAERMNRT++ + R +L+++GL K+FW EAV TA YLINRSPS + K P
Sbjct: 588 HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 647
Query: 1972 VFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKIL 2151
V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY+LW K++
Sbjct: 648 VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 705
Query: 2152 ISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHIP 2325
ISR+V+F+ES PS +P+ E A +VE + S + E E+V A ++ P
Sbjct: 706 ISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDV-AINQDEPVIED 764
Query: 2326 ENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRF-DDFHLT 2502
N P+ +A+DR +RNI+ P R+ ++ ++
Sbjct: 765 SNSSIVQQSPKR------------------------SIAKDRPKRNIKPPQRYIEEANIV 800
Query: 2503 SYVFSVFDSID-NSEPKSYEEAL 2568
+Y SV + I+ N+EP +Y EA+
Sbjct: 801 AYALSVAEEIEGNAEPSTYSEAI 823
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 501 bits (1291), Expect = e-139
Identities = 306/916 (33%), Positives = 469/916 (51%), Gaps = 36/916 (3%)
Frame = +1
Query: 28 NLEPFNGKTDFSIWQQKMKGIL-------------------IQQKVYKAVSGVYGEKDTA 150
+ + FN +DFS+W+ MK L I + K + + D++
Sbjct: 14 SFQVFNENSDFSLWKTCMKAHLGLAGLKGIIDDFDLTMTVPIPKSEGKKIEDGDEQGDSS 73
Query: 151 EKKA-------EIDEYAYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXX 309
+ K E E A + II ++ D+VLRK+ KSA +WE L + Y ETSLP+
Sbjct: 74 QTKIVPDLVKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSLPNRIY 133
Query: 310 XXXXXXXXXXDLNKEIDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSA 489
+ K I+EN++ F K++ ++ +++ I+ LN + YS +K
Sbjct: 134 VQLKFYSFKMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNRLSSRYSQLKHT 193
Query: 490 IKYGRDTITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQ 669
+KYG ++L V++ +S E +L K +N+ V++ RS+ + +NQ
Sbjct: 194 LKYGNKALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQT---------RNQ 244
Query: 670 NFHXXXXXXXXXXXXXXXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGE 849
N + C+ C + GH ++ +K SEN GE
Sbjct: 245 NHNKGGQGRGRSKSNSNAKLTCWYCKKEGHVKKDYFARKRKLE-----------SENPGE 293
Query: 850 IFMVSDLCEMHAVNSVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEK 1029
++++ SV +V D W++DS CT HMS ++ F S+ E + + ++
Sbjct: 294 AGVITEKLVFSEALSVNDLAVRDI-WVLDSGCTSHMSARRDWFCSFREDGGPTILLGDDH 352
Query: 1030 KCEVLGIGDICLKFESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKG 1209
+ G G I ++ G L+NV++VP+L NLIS L+ G + G+G ++ K
Sbjct: 353 SVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKN 412
Query: 1210 SLVIFKAVKRNNLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCF 1389
+ N LY+ ++ KT+LWH RLGH+ +++L G
Sbjct: 413 QKTALRGELVNGLYILDGNTV-LSETCVAEGSKGKTELWHSRLGHIGLNNMKVLAGKGLV 471
Query: 1390 GSDVLSCLPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSS-EPTQGGNR 1566
+ + L FC++CV+GK KV F V ++ D+L Y+HAD+WG ++ P+ GN+
Sbjct: 472 SKEEIRVLDFCENCVMGKAKKVSFNVGKHNSE----DVLRYVHADLWGSTNVTPSLSGNK 527
Query: 1567 YFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFD 1746
YFLSIIDD +RKVW++ +++K + F++F WK L+ENQ K++K LRTDNGLEFCN FD
Sbjct: 528 YFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLEFCNLKFD 587
Query: 1747 NLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLI 1926
C E+GI+RHKT YTPQQNGVAERMNRT++E+VR ML SGL + FW EA TAAYLI
Sbjct: 588 AYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLI 647
Query: 1927 NRSPSVPLKGKCPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVK 2106
NRSP+ + PE ++ K+ + +L+ FG A+VH KL+PR+ K +F+GYP G K
Sbjct: 648 NRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTK 707
Query: 2107 GYRLWLRGEPGFKILISRDVIFN-ESEFPCLTPSLPLCESEPAP-----NKVEQIPVSSN 2268
GY++WL E K +ISR+V+F+ ES + + ESE P + + ++ N
Sbjct: 708 GYKIWLLEE--HKCVISRNVLFHEESVYKDTMKKERVVESEAEPASHSKSTLIKVKTPGN 765
Query: 2269 FDESENVHAEIENVPEHIPENEPD---FVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQL 2439
+ E + E + E E + V +PE NYQL
Sbjct: 766 LNSGEVIQVSDEEESDESVEEEQEPETQVELPET---------------QTTSSLANYQL 810
Query: 2440 ARDRTRRNIRQPSRFDDFHLTSYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMN 2619
ARDR RR I P+RF + ++ +++ EP+SY+EA K +W A +EEM+
Sbjct: 811 ARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMD 870
Query: 2620 SLHVNNTWVLVPKPEN 2667
SL N TWVLV KP+N
Sbjct: 871 SLIKNGTWVLVDKPQN 886
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 501 bits (1291), Expect = e-139
Identities = 302/914 (33%), Positives = 475/914 (51%), Gaps = 36/914 (3%)
Frame = +1
Query: 31 LEPFNGKTDFSIWQQKM---------KGILIQQK--VYKAVSGVYGEKDTAEKKAEIDEY 177
+E F+G+ D+++W++K+ +L + + + K ++D E++ +++ +
Sbjct: 8 VEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKMEAF 67
Query: 178 ------AYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXX 339
A S+I+L++SD VLRK+ + SA A+ E L LY +LP+
Sbjct: 68 EEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKM 127
Query: 340 DLNKEIDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKY--GRDTI 513
N I+ N+D F ++ D++ D+ I+LL ++P+ + +K +KY G+ +
Sbjct: 128 SENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVL 187
Query: 514 TLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXX 693
+LD V + S+EL+ K + E ++V+ ++++R ++QK ++
Sbjct: 188 SLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRS------- 240
Query: 694 XXXXXXXXXXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEIFMVS--- 864
C+ CGE GH CPNK Q FKN +N SS G + S
Sbjct: 241 ------KSKSKRGCWICGEDGHLKSTCPNKNKPQ-FKNQGSNKGESSGGKGNLVEGSVNF 293
Query: 865 -DLCEMHAVNSVKSNSV-IDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCE 1038
+ M ++ S + +++EW++D+ C +HM+ + + E V M N+
Sbjct: 294 VESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISR 353
Query: 1039 VLGIGDICLKFESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLV 1218
V G+G + + ++G TL+NVR++PD+ NL+S E G + NG+++I G+ V
Sbjct: 354 VKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQV 413
Query: 1219 IFKAVKRNNLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSD 1398
+ + + + LY+ + D T LWH+RL HMS K + +L K G
Sbjct: 414 LLEGRRYDTLYILHGKPATDESLAVARANDD-TVLWHRRLCHMSQKNMSLLIKKGFLDKK 472
Query: 1399 VLSCLPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGN-RYFL 1575
+S L C+ C+ G+ K+ F ++ + LEY+H+D+WG + P GN +YF+
Sbjct: 473 KVSMLDTCEDCIYGRAKKIGFNLAQHDTKKK----LEYVHSDLWGAPTVPMSLGNCQYFI 528
Query: 1576 SIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLC 1755
S IDD++RKVWV+ +K K + FEKF +W +L+ENQ+G+R+KTLRTDNGLEFCN +FD C
Sbjct: 529 SFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFC 588
Query: 1756 AEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRS 1935
E G +RH+T YTPQQNGV ERMNRT++E+VRSML SGL KRFW EA HTA LIN++
Sbjct: 589 EEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKT 648
Query: 1936 PSVPLKGKCPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGYR 2115
P + + P+ +SGK +S L+ +GC FVH G KL R+KK V +GYP GVKGY+
Sbjct: 649 PCSAINFEFPDKRWSGKAPIYSYLRRYGCVTFVHTDGGKLNLRAKKGVLIGYPSGVKGYK 708
Query: 2116 LWLRGEPGFKILISRDVIFNES---EFPCLTPSLPLCESEPAPNKVEQIPVSSNFDES-- 2280
+WL E K ++SR+V F E+ + CE + + + ++ D S
Sbjct: 709 VWLIEEK--KCVVSRNVSFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSG 766
Query: 2281 -ENVHAEIE-----NVPEHIPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLA 2442
E A++ V P E D + + +Y L
Sbjct: 767 GEQSQAQVTPATRGAVTSTPPRYETDDIEETDVHQSPL-----------------SYHLV 809
Query: 2443 RDRTRRNIRQPSRFDDFHLTSYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNS 2622
RDR RR IR P RFDD + + D EP Y+EA++ +N D+W AMNEE+ S
Sbjct: 810 RDRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIES 869
Query: 2623 LHVNNTWVLVPKPE 2664
N+TW V +PE
Sbjct: 870 QLKNDTWTTVTRPE 883
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 497 bits (1279), Expect = e-137
Identities = 319/894 (35%), Positives = 455/894 (50%), Gaps = 9/894 (1%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAVSGVYGEKDT--AEKKAEIDEYAY 183
M+ Y + FNG FS WQ++M+ +LIQQ ++K + + DT AE A++DE A
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 184 SSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXXXXXXXXXDLNKEIDE 363
S+I L+LSD V+ + +A+ +W +L+ LY +L +
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 364 NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDTITLDTVVNGLK 543
+L+VF LI + G K ++ I+LLN++P SY ++ + I +G+ TI L V + L
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
Query: 544 SKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQNFHXXXXXXXXXXXXXXX 723
E K K Q + RGRS R N N+
Sbjct: 181 LNEKMRK--KPENQGQALITEGRGRSYQRSSN----------NYGRSGARGKSKNRSKSR 228
Query: 724 XXXCYKCGEVGHYIRECPN-KKGN---QNFKNDQANMASSSENVGEIFMVSDLCEMHAVN 891
CY C + GH+ R+CPN +KG KND A N + +++ E ++
Sbjct: 229 VRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLS 288
Query: 892 SVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKKCEVLGIGDICLKF 1071
+S EW++D+A + H +P ++LF Y V M N ++ GIGDIC+K
Sbjct: 289 GPES------EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKT 342
Query: 1072 ESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGSLVIFKAVKRNNLY 1251
G LK+VRHVPDL NLIS AL+ DG E F N ++ KGSLVI K V R LY
Sbjct: 343 NVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLY 402
Query: 1252 VCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFGSDVLSCLPFCDSC 1431
AE DLWHKR+GHMS KGL+IL K + + CD C
Sbjct: 403 RTNAEICQGELNAAQDEI--SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYC 460
Query: 1432 VLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWV 1611
+ GKQH+V F S +IL+ +++DV GP + GGN+YF++ IDD SRK+WV
Sbjct: 461 LFGKQHRVSFQTSSERK----LNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWV 516
Query: 1612 FLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEYGIKRHKTVP 1791
+++K K VF+ F+ + L+E +TG+++K LR+DNG E+ + F+ C+ +GI+ KTVP
Sbjct: 517 YILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVP 576
Query: 1792 YTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINRSPSVPLKGKCPEF 1971
TPQ NGVAERMNRT++E+VRSML + L K FWGEAV TA YLINRSPSVPL + PE
Sbjct: 577 GTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPER 636
Query: 1972 VFSGKQIDFSNLKVFGCAAFVH---QKGDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGF 2142
V++ K++ +S+LKVFGC AF H ++ KL+ +S C+F+GY + GYRLW
Sbjct: 637 VWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLW--DPVKK 694
Query: 2143 KILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDESENVHAEIENVPEHI 2322
K++ SRDV+F ESE ++ PN V S+N +E+ E+ E
Sbjct: 695 KVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQP 754
Query: 2323 PENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNIRQPSRFDDFHLT 2502
E + E G Q RR+ R + T
Sbjct: 755 GEVIEQGEQLDEG------------VEEVEHPTQGEEQ--HQPLRRSERPRVESRRYPST 800
Query: 2503 SYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWVLVPKPE 2664
YV D+ EP+S +E L ++ + AM EEM SL N T+ LV P+
Sbjct: 801 EYVL----ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPK 850
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 496 bits (1276), Expect = e-137
Identities = 309/907 (34%), Positives = 472/907 (52%), Gaps = 21/907 (2%)
Frame = +1
Query: 10 MAVPSYNLEPFNGKTDFSIWQQKMKGIL--------------IQQKVYKAVSGVYGEKDT 147
M+ +E F+G+ D+++W++K+ L + +KV + EK+
Sbjct: 1 MSAARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEE 60
Query: 148 AEKKAEIDEY---AYSSIILNLSDSVLRKVGQLKSAKALWEKLQELYTETSLPSXXXXXX 318
++ ++E A S+I+L+++D VLRK+ + +SA A+ L +LY +LP+
Sbjct: 61 VLRRELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQ 120
Query: 319 XXXXXXXDLNKEIDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKY 498
N I+ N+D F ++I D++ T D+ I+LL ++P+ + ++ +KY
Sbjct: 121 KLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKY 180
Query: 499 G--RDTITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQHRFGNQQKPDNHQNQN 672
G R T++LD VV + SKEL+L NK + E + V+ +++ R +Q+ +N+ N+
Sbjct: 181 GLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKK 240
Query: 673 FHXXXXXXXXXXXXXXXXXXCYKCGEVGHYIRECPNKKGNQNFKNDQANMASSSENVGEI 852
C+ CGE + G+ N+ +AN SE +
Sbjct: 241 SRSKSRSKKG----------CWICGE---------SSNGSSNYS--EANGLYVSEALSST 279
Query: 853 FMVSDLCEMHAVNSVKSNSVIDNEWLIDSACTFHMSPFKNLFSSYSEVKNCHVSMANEKK 1032
++H +++EW++D+ C++HM+ + F +E V M N+
Sbjct: 280 -------DIH----------LEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTV 322
Query: 1033 CEVLGIGDICLKFESGYAYTLKNVRHVPDLCNNLISCAALENDGLEGRFGNGVMKILKGS 1212
+V GIG I +K E+G L NVR++P++ NL+S E G + NG + I+ G
Sbjct: 323 SKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGD 382
Query: 1213 LVIFKAVKRNNLYVCFAESMPXXXXXXXXXXXDKTDLWHKRLGHMSGKGLEILHKAGCFG 1392
V+ + LY+ + D T LWH+RLGHMS K +++L K G
Sbjct: 383 SVLLTVRRCYTLYLLQWRPVTEESLSVVKRQDD-TILWHRRLGHMSQKNMDLLLKKGLLD 441
Query: 1393 SDVLSCLPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGN-RY 1569
+S L C+ C+ GK ++ F ++ Q + LEY+H+D+WG S P G +Y
Sbjct: 442 KKKVSKLETCEDCIYGKAKRIGFNLA----QHDTREKLEYVHSDLWGAPSVPFSLGKCQY 497
Query: 1570 FLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDN 1749
F+S IDD++RKV ++ +K K + F+KF W L+ENQT KRIKTLRTDNGLEFCN FD
Sbjct: 498 FISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDE 557
Query: 1750 LCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLIN 1929
C++ GI H+T YTPQQNGVAERMNRTL+E+VRSML+ SGL K+FW EA HT A LIN
Sbjct: 558 FCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILIN 617
Query: 1930 RSPSVPLKGKCPEFVFSGKQIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKG 2109
++PS L + P+ +SGK +S L+ FGC AFVH KL PR+KK + +GYP GVKG
Sbjct: 618 KTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKG 677
Query: 2110 YRLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFD-ESEN 2286
Y++WL E K ++SR+VIF E+ + +S+ A + P SS D + ++
Sbjct: 678 YKIWLLEEK--KCVVSRNVIFQEN-----ASYKDMMQSKDAEKDENEAPPSSYLDLDLDH 730
Query: 2287 VHAEIENVPEHIPENEPDFVHMPENXXXXXXXXXXXXXXXXXXXXXGNYQLARDRTRRNI 2466
+ I E + F P +YQL RDR RR I
Sbjct: 731 EEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNSETDIIQSPL---SYQLVRDRDRRTI 787
Query: 2467 RQPSRFDDFHLTSYVFSVFDSIDNSEPKSYEEALKSKNSDEWLNAMNEEMNSLHVNNTWV 2646
R P RFDD + + EP Y EA +S N ++W AMNEEM S N+TW
Sbjct: 788 RAPVRFDDEDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWT 847
Query: 2647 LVPKPEN 2667
+V +P++
Sbjct: 848 VVKRPQH 854