BLASTX nr result
ID: Rehmannia24_contig00001424
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00001424
(435 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group] 45 2e-08
gb|AAP53789.1| retrotransposon protein, putative, unclassified [... 42 4e-08
gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group] 41 5e-08
gb|ABF98227.1| retrotransposon protein, putative, unclassified [... 41 5e-08
gb|ADB85304.1| putative retrotransposon protein [Phyllostachys e... 45 7e-08
gb|ABG22014.1| retrotransposon protein, putative, unclassified [... 43 9e-08
emb|CAE04958.2| OSJNBa0070D17.9 [Oryza sativa Japonica Group] 40 5e-07
ref|XP_004295307.1| PREDICTED: uncharacterized protein LOC101309... 45 8e-07
gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptas... 42 3e-06
gb|AAX95226.1| retrotransposon protein, putative, unclassified [... 40 1e-05
gb|ABA91843.2| retrotransposon protein, putative, unclassified [... 40 1e-05
emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera] 47 1e-05
>emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]
Length = 1434
Score = 44.7 bits (104), Expect(2) = 2e-08
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +3
Query: 72 LDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEGN 191
L P + IHPVFHV LKK + VP P LPL D +GN
Sbjct: 1358 LQLPEEAGIHPVFHVSQLKKHVGNLAVPLPNLPLVDEDGN 1397
Score = 38.9 bits (89), Expect(2) = 2e-08
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKAT 301
G K EP VL RR R+ E V+Q LV W N +PE AT
Sbjct: 1396 GNIKAEPVAVLARRVVPRRNEPVTQWLVHWENLTPEDAT 1434
>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1611
Score = 41.6 bits (96), Expect(2) = 4e-08
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
GQ K EP VL RR R E V+Q L+ W N +P +ATW+
Sbjct: 1557 GQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWE 1597
Score = 41.2 bits (95), Expect(2) = 4e-08
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P G+ IHPVFHV LKK + +P P LP +G
Sbjct: 1518 KLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDG 1557
>gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1246
Score = 41.2 bits (95), Expect(2) = 5e-08
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P + IHPVFHV LKK + + +P P LPL +G
Sbjct: 1153 KLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADG 1192
Score = 41.2 bits (95), Expect(2) = 5e-08
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
G K EP VL RR R+ E V Q L+ W N +PE ATW+
Sbjct: 1192 GTVKTEPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWE 1232
>gb|ABF98227.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1160
Score = 41.2 bits (95), Expect(2) = 5e-08
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P + IHPVFHV LKK + + +P P LPL +G
Sbjct: 1067 KLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADG 1106
Score = 41.2 bits (95), Expect(2) = 5e-08
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
G K EP VL RR R+ E V Q L+ W N +PE ATW+
Sbjct: 1106 GTVKTEPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWE 1146
>gb|ADB85304.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 335
Score = 44.7 bits (104), Expect(2) = 7e-08
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKAT 301
G+ K EP VLDRR R+ E V+Q+L++W+N PE AT
Sbjct: 297 GKIKTEPVVVLDRRIVPRRNEPVAQLLIQWLNLGPEDAT 335
Score = 37.4 bits (85), Expect(2) = 7e-08
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
RL P + IHPVFHV LKK + VP LPL G
Sbjct: 258 RLQLPEHTLIHPVFHVNQLKKHLGSHAVPLTGLPLVGENG 297
>gb|ABG22014.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1422
Score = 43.1 bits (100), Expect(2) = 9e-08
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
GQ K EP ++ RR R+G V+Q LV W N SP ATWK
Sbjct: 1379 GQIKTEPVAIMRRRMIPRRGVAVTQWLVFWKNLSPADATWK 1419
Score = 38.5 bits (88), Expect(2) = 9e-08
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P + IHPVFHV LKK + VP LP A EG
Sbjct: 1340 KLQLPAEALIHPVFHVSQLKKHLGSHAVPMANLPAAGPEG 1379
>emb|CAE04958.2| OSJNBa0070D17.9 [Oryza sativa Japonica Group]
Length = 394
Score = 40.0 bits (92), Expect(2) = 5e-07
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
RL P + IHPVFHV LKK + +P P LP EG
Sbjct: 301 RLQLPNDATIHPVFHVSQLKKHLGKRAIPMPNLPSVGPEG 340
Score = 39.3 bits (90), Expect(2) = 5e-07
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
GQ K +P VL RR R G V+Q L+ W N P ATW+
Sbjct: 340 GQIKTQPTAVLQRRMMPRNGVAVTQWLILWENLGPTDATWE 380
>ref|XP_004295307.1| PREDICTED: uncharacterized protein LOC101309522 [Fragaria vesca
subsp. vesca]
Length = 249
Score = 45.4 bits (106), Expect(2) = 8e-07
Identities = 23/41 (56%), Positives = 26/41 (63%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEGN 191
RL PP S+IHPVFHV LLKKRI S LP D+ G+
Sbjct: 145 RLKLPPNSKIHPVFHVSLLKKRIGEGLPVSTTLPQFDSSGD 185
Score = 33.1 bits (74), Expect(2) = 8e-07
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 200 EPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
+P RVLD +K ++++ LV+W + S E ATW+
Sbjct: 189 QPLRVLDMGVRTKKKQRITTWLVQWKSMSEEDATWE 224
>gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
finger, CCHC-type; Peptidase aspartic, active site;
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 1297
Score = 42.0 bits (97), Expect(2) = 3e-06
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 197 IEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWKRC*VYSQEISGF*SLRTRISFTG 376
IEP VL RR +GEK+ Q+LV W+ E+ATW+ + + F L + +G
Sbjct: 1205 IEPETVLTRRTIQVQGEKIDQVLVHWMGQKVEEATWEDTLIIRSQFPNF-YLEDKAMLSG 1263
Query: 377 G 379
G
Sbjct: 1264 G 1264
Score = 34.3 bits (77), Expect(2) = 3e-06
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELP-LADNEG 188
+L P GSR+H VFHV LLKK + G + LP L +++G
Sbjct: 1163 KLKLPEGSRVHSVFHVSLLKKAV-GNYHEEENLPDLEEDKG 1202
>gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1513
Score = 39.7 bits (91), Expect(2) = 1e-05
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
GQ K +P VL RR R G V+Q L+ W N P ATW+
Sbjct: 1459 GQIKTQPVAVLQRRMIPRNGVAVTQWLILWENLGPADATWE 1499
Score = 35.0 bits (79), Expect(2) = 1e-05
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P + IHPVFHV LKK + VP LP +G
Sbjct: 1420 KLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLPSMGPDG 1459
>gb|ABA91843.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1411
Score = 39.7 bits (91), Expect(2) = 1e-05
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKVSQILVEWVNSSPEKATWK 307
GQ K +P VL RR R G V+Q L+ W N P ATW+
Sbjct: 1357 GQIKTQPVAVLQRRMIPRNGVAVTQWLILWENLGPADATWE 1397
Score = 35.0 bits (79), Expect(2) = 1e-05
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L P + IHPVFHV LKK + VP LP +G
Sbjct: 1318 KLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLPSMGPDG 1357
>emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]
Length = 1384
Score = 46.6 bits (109), Expect(2) = 1e-05
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 69 RLDHPPGSRIHPVFHVLLLKKRISGEFVPSPELPLADNEG 188
+L+ P GS+IHP+FHV LLKK++ + ELPL D+EG
Sbjct: 1262 KLNLPEGSKIHPIFHVSLLKKKLGEPNNTTVELPLTDDEG 1301
Score = 28.1 bits (61), Expect(2) = 1e-05
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 185 GQFKIEPFRVLDRRDCIRKGEKV-SQILVEWVNSSPEKATWK 307
G+ +EP +LD R ++KG ++ + LV+W + ATW+
Sbjct: 1301 GEIVLEPEGILDTR-WVKKGSRIFEESLVKWKRLPLDDATWE 1341