BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00001091
         (4685 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   684   0.0  
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   667   0.0  
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   612   e-172
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       564   e-157
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   549   e-153
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   546   e-152
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   528   e-147
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   525   e-146
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   522   e-145
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           522   e-145
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   518   e-143
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   518   e-143
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   516   e-143
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   504   e-139
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              503   e-139
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   501   e-138
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   483   e-133
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   476   e-131
gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]   466   e-128
gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]   456   e-125

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  684 bits (1766), Expect = 0.0
 Identities = 379/1060 (35%), Positives = 586/1060 (55%), Gaps = 20/1060 (1%)
 Frame = +3

Query: 51   VQNKFPG-WLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTS 227
            +Q KF   W   NN+     GRI + W ++ V++ VL    Q+I   +      N    +
Sbjct: 47   IQKKFGNRWSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMA 106

Query: 228  FIYGLNTVGERRCLWNKMLELGDLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEFHD 407
             +YGL+T+ +R+ LW ++     +   P +L+GD+N + +  ++LNG   +     +   
Sbjct: 107  AVYGLHTIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRS 166

Query: 408  TCAYLGLSEVQSTGCYFTWTNNTIWC-----RLDRALINSAWSNSNWRCSADIPVPGNVS 572
                  L E  +TG +++W N +I       R+D++ +N AW N       +    G +S
Sbjct: 167  FVLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-IS 225

Query: 573  DHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW---NLNFWGKAQFILCKKLK 743
            DHSP++ +   Q+    +PFKF N  A    F+  V+ AW   N  F  K  ++   +L+
Sbjct: 226  DHSPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWV---RLQ 282

Query: 744  ALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAK 923
            A+K +LK  ++  FS    +V++++  L   Q       + S L +  K+L A+    + 
Sbjct: 283  AVKRALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQV-SELQEEEKDLIAQLRKWST 341

Query: 924  AERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVIL---EDGSKTSSFDDLSK 1094
             + S L QK++  +L+  D N+KFF + IK   +RK  N ++L   + G + +   ++  
Sbjct: 342  IDESILKQKSRIQWLSLGDSNSKFFFTAIK---VRKARNKIVLLQNDRGDQLTENTEIQN 398

Query: 1095 AFVNYFKNLFGTSF-QTSPVDLQTLQSGPCIDEDDFNLLSSPITQQAIKIALFDIEDERS 1271
               N+++ L GTS  Q   +DL  ++ G  +       L  PIT Q I  AL DI+D ++
Sbjct: 399  EICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKA 458

Query: 1272 PGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFR 1451
            PG DGF+S FFKKSW V+  ++   + +FF++  + + IN TA+ LIPK D +    D+R
Sbjct: 459  PGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYR 518

Query: 1452 PIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRI 1631
            PIACC+ +YK+I+KIL  +L++V+ +++D AQ+ FI  R+I DNI LA E+IR Y R  +
Sbjct: 519  PIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHV 578

Query: 1632 SPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICINGSLQGKF 1811
            SPRC IKVD++KAYD++ W FLE +L  LGFP +FI W+M CV T SYSI +NG     F
Sbjct: 579  SPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPF 638

Query: 1812 PGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLF 1991
              ++GLRQGDP+SP LF L MEYLSR +        F +HP+CE +K+THL FADDL++F
Sbjct: 639  DAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMF 698

Query: 1992 SRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILNLLNFPLGTLPVR 2171
            +R D  S+  ++   N F  ASGL  +  KS ++  G+  ++ + + + +  P+G+LP R
Sbjct: 699  ARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFR 758

Query: 2172 YLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFP 2351
            YLGVPLA++KLN +   PL D+I +    W A+ LSYAGRL L+K++L  ++ +W QIFP
Sbjct: 759  YLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFP 818

Query: 2352 LPSTVIDRINRLCRVFLWGKNT-----SPIKWSKVCLPFDEGGLGLRDVHSWNKALLAKI 2516
            LP  +I  +   CR FLW         +P+ W  +  P   GGL + ++  WNKA + K+
Sbjct: 819  LPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKL 878

Query: 2517 LWNIHSKADSLWVRWVHSFYLKNQSIWTWDPKKSDSCLLKRICDIRNEILAKFGSLDLAI 2696
            LW I  K D LWVRWV+++Y+K Q+I       + S +L++I + R E+L + G  + A+
Sbjct: 879  LWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESR-ELLTRTGGWE-AV 936

Query: 2697 SNLSLFANSKGLCSSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINN 2876
            SN   F+        K Y L +E      W   +  N   PK  F +WLA  +RLAT   
Sbjct: 937  SNHMNFS------IKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAER 990

Query: 2877 LK--YLDVDPTCKLCGNYLENASHLFFDCIVTRLLWDRVKKWLKFSHSMSTIAGALKWTK 3050
            +     DV P CK+CGN +E   HLFF+CI ++ +W +V  +L         A      K
Sbjct: 991  VSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEIWGKVLLYLNLQPQADAQAKKELAIK 1050

Query: 3051 KEHGAPALKKARAVAVCCTIYQIWKARNCQVFEGLNFAED 3170
            K        K   +    ++Y IW  RN +VF G+   ++
Sbjct: 1051 KARSTKDRNKLYVMMFTESVYAIWLLRNAKVFRGIEINQN 1090


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  667 bits (1720), Expect = 0.0
 Identities = 374/1062 (35%), Positives = 575/1062 (54%), Gaps = 23/1062 (2%)
 Frame = +3

Query: 72   WLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSFIYGLNTV 251
            W   NN+      RI I W  + V++ +  T  QL+ C +  +  +  ++   +YGL+T+
Sbjct: 55   WKWLNNYSHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQDQSHKLKMVA--VYGLHTI 112

Query: 252  GERRCLWNKMLELGDLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEFHDTCAYLGLS 431
             +R+ LW+ +L+     D P +++GDFN + + +++L G   T    E+F        L 
Sbjct: 113  ADRKSLWSGLLQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLI 171

Query: 432  EVQSTGCYFTWTNNTIW-----CRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVS 596
            E +ST  Y++W+N++I       R+D+A +N  W       S     PG +SDHSP++ +
Sbjct: 172  ESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPG-ISDHSPLLFN 230

Query: 597  FFEQNLVLSKPFKFFNMWALHPDFLNTVQTAWN-LNFWGKAQFILCKKLKALKPSLKELN 773
                     KPFKF N+ A   +FL TV+ AWN +N   K Q I    LKA+K  LK++ 
Sbjct: 231  LMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLN-LKAVKRELKQMK 289

Query: 774  NFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAKAERSFLSQKA 953
                     +VK ++  L++ Q Q   D  N  +    K +       +  E S L QK+
Sbjct: 290  TQKIGLAHEKVKNLRHQLQDLQSQDDFDH-NDIMQTDAKSIMNDLRHWSHIEDSILQQKS 348

Query: 954  KCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGTS 1133
            +  +L   D N+K F + +K      +++ +  EDG      D++ +  + ++K L GT 
Sbjct: 349  RITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTR 408

Query: 1134 FQT-SPVDLQTLQSGPCIDEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKK 1310
              T   VDL T++ G C+       L   +    I  AL  I ++++PG DGF++ FFKK
Sbjct: 409  ASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKK 468

Query: 1311 SWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVIT 1490
            SW  +  ++ A + EFF++S++ R IN   + L+PK  H+  V +FRPIACC V+YK+I+
Sbjct: 469  SWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIIS 528

Query: 1491 KILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKA 1670
            K+L ++++ ++ ++++ AQS FI GR+I DNI LA E+IR Y R  +SPRC +KVD++KA
Sbjct: 529  KMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKA 588

Query: 1671 YDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMS 1850
            YD++ WSFLE +L   GFP  F+ W+MECVST SYS+ +NG     F  ++GLRQGDPMS
Sbjct: 589  YDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMS 648

Query: 1851 PALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILID 2030
            P LF LCMEYLSR L+    +  F +HP+CE L ITHL FADDL++F R D  S+  +  
Sbjct: 649  PFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNV 708

Query: 2031 CLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNV 2210
                F +ASGL  +  KSN++  G+  +    + + ++  LG LP RYLGVPL ++KL  
Sbjct: 709  AFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTY 768

Query: 2211 NHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLC 2390
                PL + I +    W A  LSYAGRL LIKS+L  ++ +W  IFPL   VI  + ++C
Sbjct: 769  AQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVC 828

Query: 2391 RVFLWGKNT-----SPIKWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWV 2555
            R FLW   T     +P+ W+ +  P   GG  + ++  WN+A + K+LW I  K D LWV
Sbjct: 829  RKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWV 888

Query: 2556 RWVHSFYLKNQSIWTWDPKKSDSCLLKRICDIRNEILAKFGSLDLAISNLSLFANSKGLC 2735
            RW+HS+Y+K Q I T +     + +L++I   R+  L+  G  D       +    K   
Sbjct: 889  RWIHSYYIKRQDILTVNISNQTTWILRKIVKARDH-LSNIGDWD------EICIGDK-FS 940

Query: 2736 SSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKYLDV--DPTCK 2909
              K Y    E G +  W   +  N+  PK  F +W+  ++RL T++ +    V  D   +
Sbjct: 941  MKKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLNYR 1000

Query: 2910 LCGNYLENASHLFFDCIVTRLLWDRVKKWLKFSHS-------MSTIAGALKWTKKEHGAP 3068
            LC N  E   HLFF C  +  +W ++   ++F +S       +S++ G  +         
Sbjct: 1001 LCRNDGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQEIISSVCGQAR--------- 1051

Query: 3069 ALKKARAVAVCCT--IYQIWKARNCQVFEGLNFAEDTVFLKI 3188
              KK + + +  T  +Y IWK RN + F G N  E+ V  KI
Sbjct: 1052 -KKKGKLIVMLYTEFVYAIWKQRNKRTFTGENKDENEVLRKI 1092


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  612 bits (1578), Expect = e-172
 Identities = 333/901 (36%), Positives = 517/901 (57%), Gaps = 18/901 (1%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            LET V  + +R    + + FPGW +  N+     GRI ++W+ + V++ VL    Q I C
Sbjct: 36   LETRV--KEHRARRSLLSSFPGWKSVCNYEFAALGRIWVVWDPA-VEVTVLSKSDQTISC 92

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLELG---DLIDSPWLLLGDFNTIKNPDE 356
             +         + +F+Y +N    RR LW+++  L       D PW++LGDFN   +P +
Sbjct: 93   TVKLPHISTEFVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVD 152

Query: 357  KLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTW----TNNTIWCRLDRALINSAWSN 524
               G    ++ +EEF +      +S++   G ++TW     NN I  ++DR L+N +W  
Sbjct: 153  ASTGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLI 212

Query: 525  SNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAWN-LN 701
            ++   S         SDH P  V+   Q+   +KPFK  N    HP+F+  ++  W+ L 
Sbjct: 213  AS-PLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLA 271

Query: 702  FWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCD 881
            + G A F L KK K LK +++  N  H+S +  RV Q    LK  Q  L   P +S L  
Sbjct: 272  YQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAG 330

Query: 882  SVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILEDG 1061
              KE       LA AE  FL QK++  +L   D NT FFH ++       +++ ++ + G
Sbjct: 331  LEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTG 390

Query: 1062 SKTSSFDDLSKAFVNYFKNLFGTSFQTSPVD----LQTLQSGPCIDEDDFNLLSSPITQQ 1229
             +  + D+L    V++FK LFG+S      +    + +L    C DE+   LL + +++ 
Sbjct: 391  RRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKC-DENTRQLLEAEVSEA 449

Query: 1230 AIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIAL 1409
             IK   F +   +SPGPDG++S FFKK+W +VG  +IAAV EFF S ++L Q N TA+ +
Sbjct: 450  DIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTM 509

Query: 1410 IPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIF 1589
            +PK  ++  + +FRPI+CCN +YKVI+K+LA +LE+++P  I P+QSAF+ GR +T+N+ 
Sbjct: 510  VPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVL 569

Query: 1590 LAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTA 1769
            LA E+++ + +  IS R  +KVDL+KA+D++ W F+ + L     PP F++W+ +C+++ 
Sbjct: 570  LATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITST 629

Query: 1770 SYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETL 1949
            S+SI ++GSL G F G +GLRQGDP+SP+LF++ ME LSRLL+ + +  +  YHP+   +
Sbjct: 630  SFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEV 689

Query: 1950 KITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVG-DKLDN 2126
            +I+ LAFADDLM+F  G   S++ +   L  FKN SGL++N+ KS ++TAG+   DK D 
Sbjct: 690  RISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDT 749

Query: 2127 ILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIK 2306
            +     F  GT P RYLG+PL  +KL  + Y+ L D+IA+  N W   +LS+AGRL LI 
Sbjct: 750  L--AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLIS 807

Query: 2307 SVLQGVECFWLQIFPLPSTVIDRINRLCRVFLWGKNTS-----PIKWSKVCLPFDEGGLG 2471
            SV+     FWL  F LP   +  I ++C  FLWG + +      + W   CLP  EGGLG
Sbjct: 808  SVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLG 867

Query: 2472 LRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWDPKKSDSCLLKRICDI 2651
            LR+  +WNK L  +++W + ++ DSLWV W H+  L++ + W  +     S + K I  +
Sbjct: 868  LRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGL 927

Query: 2652 R 2654
            R
Sbjct: 928  R 928



 Score = 65.9 bits (159), Expect = 2e-07
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 4/166 (2%)
 Frame = +3

Query: 2715 ANSKGLCSSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKYLDV 2894
            ++S    S   ++  R+      W +AVW     PKY+F  W+A  +RL       +   
Sbjct: 1028 SSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWST 1087

Query: 2895 D--PTCKLCGNYLENASHLFFDCIVTRLLWDRVKKWLKFSHSMSTIAGALKWTKKEHG-- 3062
            +    C +C    E   HLF  C +  L+W +V      S         ++W     G  
Sbjct: 1088 NRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSNQGSF 1147

Query: 3063 APALKKARAVAVCCTIYQIWKARNCQVFEGLNFAEDTVFLKIQKDV 3200
            +  LKK   +AV   I+ IWK RN ++   ++ +   +F +I + +
Sbjct: 1148 SGTLKK---LAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSI 1190


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  564 bits (1453), Expect = e-157
 Identities = 329/905 (36%), Positives = 493/905 (54%), Gaps = 22/905 (2%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            +ET V    +R    +    PGW    N+     G+I ++W+ S V + V+    Q+I C
Sbjct: 37   IETHVKQPKDRK--FINALLPGWSFVENYAFSDLGKIWVMWDPS-VQVVVVAKSLQMITC 93

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLEL---GDLIDSPWLLLGDFNTIKNPDE 356
             +    S + I+ S +Y  N V  R+ LW +++ +   G + D PWL+LGDFN + NP E
Sbjct: 94   EVLLPGSPSWIIVSVVYAANEVASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQE 153

Query: 357  KLNGEPFTSK-SVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAWS 521
              N        ++ +F D      LS+++  G  FTW N +    +  ++DR L+N +W 
Sbjct: 154  HSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSW- 212

Query: 522  NSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW-NL 698
            N+ +  S  I    + SDH    V   E ++   +PFKFFN    + DFLN V+  W  L
Sbjct: 213  NALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTL 272

Query: 699  NFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDP--LNSA 872
            N  G + F + KKLKALK  +K+ +  ++S +  R K+    L   Q +   DP  +N++
Sbjct: 273  NVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINAS 332

Query: 873  LCDSVKELKAKETF--LAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSV 1046
                  EL+A+  +  L  AE SF  QK++  +    D NTK+FH +    +    ++++
Sbjct: 333  F-----ELEAERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISAL 387

Query: 1047 ILEDGSKTSSFDDLSKAFVNYFKNLFGTS---FQTSPVDLQTLQSGPCIDEDDFNLLSSP 1217
               +G    S + +     +YF +L G     +     D+  L S  C       L  S 
Sbjct: 388  YDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCEL-EST 446

Query: 1218 ITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHT 1397
             + + I+ ALF +   +S GPDGF++ FF  SW +VG +V  A+ EFF S  +L+Q N T
Sbjct: 447  FSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNAT 506

Query: 1398 AIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNIT 1577
             I LIPK  +    +DFRPI+C N +YKVI ++L  +L+ ++  +I  AQSAF+ GR++ 
Sbjct: 507  TIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLA 566

Query: 1578 DNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMEC 1757
            +N+ LA +++  Y    ISPR  +KVDLKKA+D++ W F+   L  L  P  FI+W+ +C
Sbjct: 567  ENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQC 626

Query: 1758 VSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPR 1937
            +ST ++++ ING   G F   +GLRQGDP+SP LF+L ME  S LL  R  +    YHP+
Sbjct: 627  ISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPK 686

Query: 1938 CETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDK 2117
               L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  KS+L+ AG+  ++
Sbjct: 687  ASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGL--NQ 744

Query: 2118 LDNILN-LLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRL 2294
            L++  N    FP+GTLP+RYLG+PL  +KL +  Y PL ++I +    W    LS+AGR+
Sbjct: 745  LESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRI 804

Query: 2295 LLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLWGKNTSPIK-----WSKVCLPFDE 2459
             LI SV+ G   FW+  F LP   I RI  LC  FLW  N    K     W+ +CLP  E
Sbjct: 805  QLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSE 864

Query: 2460 GGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWDPKKSDSCLLKR 2639
            GGLGLR +  WNK L  +++W +    DSLW  W H  +L   S W  +  +SDS   KR
Sbjct: 865  GGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKR 924

Query: 2640 ICDIR 2654
            +  +R
Sbjct: 925  LLSLR 929



 Score = 60.1 bits (144), Expect = 9e-06
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
 Frame = +3

Query: 2724 KGLCSSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLK---YLDV 2894
            +G  ++K ++  R       W S++W     PKY+F +W++  +RL T   L    ++  
Sbjct: 1031 QGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQS 1090

Query: 2895 DPTCKLCGNYLENASHLFFDCIVTRLLWDRV-KKWLKFSHSMSTIAGALKWTKKE--HGA 3065
            D  C LC    E+  HL   C  +  +W  V ++        S+ +  L W ++      
Sbjct: 1091 D-ACVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQSSPEAP 1149

Query: 3066 PALKKARAVAVCCTIYQIWKARNCQVFEGLNFAEDTVFLKIQKDVYKVV 3212
            P L+K  +  V   +Y +W+ RN  +   L  A   +F  + +++  ++
Sbjct: 1150 PLLRKIVSQVV---VYNLWRQRNNLLHNSLRLAPAVIFKLVDREIRNII 1195


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  549 bits (1414), Expect = e-153
 Identities = 320/892 (35%), Positives = 475/892 (53%), Gaps = 28/892 (3%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            +ET V  + ++   +V   F  W    N+   + GRI +LW  + V L  +    QL+ C
Sbjct: 35   VETRV--KESKVSQLVGKLFKDWSILTNYEHNRRGRIWVLWRKN-VRLSPIYKSCQLLTC 91

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLELGDLIDSP------WLLLGDFNTIKN 347
             +  +  Q+    SF+Y  N V ER+ LW+   EL D  DSP      W LLGDFN   +
Sbjct: 92   SVKLEDRQDEFFCSFVYASNYVEERKVLWS---ELKDHYDSPIIRHKPWTLLGDFNETLD 148

Query: 348  PDEKLNG--EPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALIN 509
              E       P  +  + +F     Y  L+++ + G  FTW N      I  +LDR LIN
Sbjct: 149  IAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLIN 208

Query: 510  SAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQ--NLVLS-KPFKFFNMWALHPDFLNTV 680
              W N  +  S  +   G  SDH    +S   +  N V   KPFKF N      DF   V
Sbjct: 209  DCW-NQTFSQSYSVFEAGGCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMV 267

Query: 681  QTAWN----LNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQL 848
             T W     L       F   K LK LKP ++ +      ++S +  +    L   Q   
Sbjct: 268  STYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVN 327

Query: 849  HTDPLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLR 1028
             T+P + A+ +      ++   +A  E  +L QK+K  +    D+NTK FH         
Sbjct: 328  LTNPSSMAM-EEENAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAH 386

Query: 1029 KQMNSVILEDGSKTSSFDDL---SKAFVNYFKNLFGTSFQTSPV-DLQTLQSGPCIDEDD 1196
              +  ++  DG   +  D++   ++ F   F  L    F+   + +LQ L    C D D 
Sbjct: 387  NTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQ 446

Query: 1197 FNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKI 1376
             +L+  P+T + I+  LF +  ++SPGPDG++S FFK +W+++G++   AV  FF    +
Sbjct: 447  QSLIR-PVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFL 505

Query: 1377 LRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAF 1556
             + IN T +ALIPK   +  + D+RPI+CCNV+YKVI+KI+A++L+ V+PK I   QSAF
Sbjct: 506  PKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAF 565

Query: 1557 ISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIF 1736
            +  R + +N+ LA E++++Y +  IS RCAIK+D+ KA+D++ W FL  V   LGFP  F
Sbjct: 566  VKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREF 625

Query: 1737 ISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTS 1916
            I W+  C++TAS+S+ +NG L G F   RGLRQG  +SP LF++CM+ LS++L       
Sbjct: 626  IHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAAR 685

Query: 1917 TFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFT 2096
             F YHP+C+T+ +THL+FADDLM+ S G + S++ +I   ++F   SGL ++  KS ++ 
Sbjct: 686  HFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYL 745

Query: 2097 AGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSL 2276
            AG+     + + +   F  G LPVRYLG+PL  ++L+     PL +++   I  WT+  L
Sbjct: 746  AGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFL 805

Query: 2277 SYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPIKWSKV 2441
            SYAGRL LI SVL  +  FWL  F LP   I  + ++C  FLW       N + I W  V
Sbjct: 806  SYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMV 865

Query: 2442 CLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIW 2597
            C P DEGGLGLR +   N     K++W I S ++SLWV+WV    L+N S W
Sbjct: 866  CKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFW 917



 Score = 63.5 bits (153), Expect = 8e-07
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
 Frame = +3

Query: 2760 REAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLAT----INNLKYLDVDPTCKLCGNYL 2927
            R    +  WH  +W +   PKYSFC WLA + RL T    IN    +  D  C  C   L
Sbjct: 1048 RSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATD--CIFCQGTL 1105

Query: 2928 ENASHLFFDCIVTRLLWDRVKKWL---KFSHSMSTIAGALKWTKKEHGAPALKKARAVAV 3098
            E   HLFF C  T ++W  + + +   +++    +I  A+  T  +H        R V  
Sbjct: 1106 ETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAI--TNSQHHRVEWFLRRYV-F 1162

Query: 3099 CCTIYQIWKARN 3134
              TIY +W+ RN
Sbjct: 1163 QATIYIVWRERN 1174


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  546 bits (1408), Expect = e-152
 Identities = 315/873 (36%), Positives = 471/873 (53%), Gaps = 20/873 (2%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            LET V  ++   + ++ +  PGW   +N+   + GRI I+W+ S   L    TD Q++ C
Sbjct: 35   LETHVAQEN--ANSVLASTLPGWRMDSNYCCSELGRIWIVWDPSISVLVFKRTD-QIMFC 91

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLELG---DLIDSPWLLLGDFNTIKNPDE 356
             +       S   +F+YG N+  +RR LW  +L L     L  +PWLLLGDFN I    E
Sbjct: 92   SIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASE 151

Query: 357  --KLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTWTN----NTIWCRLDRALINSAW 518
               +N      + +E+         LS++ S G +FTW+N    N I  +LDRAL N  W
Sbjct: 152  HYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEW 211

Query: 519  SNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAWNL 698
                    A    PG+ SDH+P ++    Q     K FK+F+  + HP +L  + TAW  
Sbjct: 212  FAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEA 270

Query: 699  N-FWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSAL 875
            N   G   F L + LK  K   + LN   FS+I  R  Q  T L++ Q++L T P +  L
Sbjct: 271  NTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSP-SDTL 329

Query: 876  CDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILE 1055
                   + +  F A A  SF  QK++  +L+  D NT+FFH  +  +     +  +  +
Sbjct: 330  FRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGD 389

Query: 1056 DGSKTSSFDDLSKAFVNYFKNLFGT-SFQTSPVDLQTLQSGPCIDEDDFNLLSSPIT--- 1223
            DG +  + D +    + Y+ +L G  S   +P  ++ ++       D F  L+S +T   
Sbjct: 390  DGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSF--LASQLTTIP 447

Query: 1224 -QQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTA 1400
             ++ I   LF +   ++PGPDGF   FF ++W +V + V+AA+ EFF S  + R  N TA
Sbjct: 448  SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 507

Query: 1401 IALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITD 1580
            I LIPK   +  +  FRP+ACC  +YKVIT+I++ +L+  + + +   Q  FI GR + +
Sbjct: 508  ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 567

Query: 1581 NIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECV 1760
            N+ LA E++ N+     + R  ++VD+ KAYD ++W FL  +L  L  P +FI W+  C+
Sbjct: 568  NVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCI 627

Query: 1761 STASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRC 1940
            S+ASYSI  NG L G F GK+G+RQGDPMS  LF+L M+ LS+ L +      F  HP C
Sbjct: 628  SSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNC 687

Query: 1941 ETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKL 2120
                ITHL+FADD+++FS G   S+  ++  L+DF+  SGL +N  K+ L   G    + 
Sbjct: 688  LAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARN 747

Query: 2121 DNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLL 2300
             ++ + L    G+LPVRYLGVPL +QK+    Y PL DRI S    WTA  LS+AGRL L
Sbjct: 748  RSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQL 807

Query: 2301 IKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPIKWSKVCLPFDEGG 2465
            +KSV+     FW  +F  P+  + ++ ++C  FLW         + I W+ VC P + GG
Sbjct: 808  LKSVIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGG 867

Query: 2466 LGLRDVHSWNKALLAKILWNIHSKADSLWVRWV 2564
            LGL+ + SWN+ L  K++W + + A SLWV WV
Sbjct: 868  LGLKRLSSWNRILALKLIWLLFTSAGSLWVSWV 900


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  528 bits (1361), Expect = e-147
 Identities = 354/1089 (32%), Positives = 531/1089 (48%), Gaps = 46/1089 (4%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            LET V+   ++   I    F  W   +N+   + GRI ++W+SS V LQV+    Q+I C
Sbjct: 337  LETRVI--ESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSS-VQLQVIFKSSQMIVC 393

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLELGDLI---DSPWLLLGDFNTIKNPDE 356
             +  +      + SFIY  N V ER+ LW  +  L + +   + PWLL GDFN     +E
Sbjct: 394  LVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEE 453

Query: 357  KLNG--EPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAW 518
              +    P  +  + +F     Y  L ++++ G  FTW N      I  +LDR L+N  +
Sbjct: 454  HSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEY 513

Query: 519  SNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKP---FKFFNMWALHPDFLNTVQTA 689
             NS +  S  I   G  SDH   +   F     + KP   FKF N+ A HP+F+  V+  
Sbjct: 514  -NSAYPHSYCIMDSGGCSDH---LRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDF 569

Query: 690  WN----LNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTD 857
            W     L       F   KKLK LKP LK+L+  + S ++ R       L   Q +  T 
Sbjct: 570  WKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTKSLTT 629

Query: 858  PLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQM 1037
             LN    D V E  A E +                                K   L   +
Sbjct: 630  -LNPH--DIVDESLAFERWE-------------------------------KERHLLNAI 655

Query: 1038 NSVILEDGSKTSSFDDLSKAFVNYFKNLFGTSFQTSPVDLQTLQSGPCIDE--------- 1190
            + V+   G++  + DD+    V +F +L  +     P D     +G  +DE         
Sbjct: 656  HEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQ----PSDF----TGISVDELKGILQYRY 707

Query: 1191 --DDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFD 1364
               + NLL + IT+  +    F I   +SPGPDG++  FF+++W V+G +V  A+  FF 
Sbjct: 708  SLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFT 767

Query: 1365 SSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPA 1544
               + + +N T +ALIPK  ++  + D+RPI+CCNV+YK I+K+LA++L+ ++P+ I P 
Sbjct: 768  YGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPN 827

Query: 1545 QSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGF 1724
            QSAFIS R + +N+ LA E++++Y +  +SPRCA+K+DL KA+D++ W FL   L  L  
Sbjct: 828  QSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDI 887

Query: 1725 PPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVR 1904
            P  FI W+  C+STAS+S+ +N           GLRQG  +SP LF++CM  LS +L   
Sbjct: 888  PEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKG 936

Query: 1905 TNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKS 2084
                 F YHPRC  + +THL FADD+M+FS G   S++ ++    DF   SGL+++  KS
Sbjct: 937  AVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKS 996

Query: 2085 NLFTAGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWT 2264
             LF A I  +   +IL    F  G+LPVRYLG+PL  +++ +    PL ++I S I+ W 
Sbjct: 997  TLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWK 1056

Query: 2265 ANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-GKNTSP----IK 2429
               LSYAGRL L+ SV+  +  FW+  F LP   I  I ++   FLW G + +P    + 
Sbjct: 1057 NRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVA 1116

Query: 2430 WSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWDP 2609
            W  VC P  EGGLGLR +   NK    K++W + S   SLWV W+     +N  I T   
Sbjct: 1117 WHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWI-----QNNLIRTVAE 1171

Query: 2610 KKSDSCLLKRICDIRNEILAKFGSLDLAISNLSLFANSKGLC------------SSKMYD 2753
              S         DI N+I  +   L+  +         + LC            S +++ 
Sbjct: 1172 ALSSHRRRSHRDDILNDIEEE---LEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWH 1228

Query: 2754 LFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKYLD--VDPTCKLCGNYL 2927
              RE G    WH A+W +   PK++F  WLA +DRL T + +   +  +   C LC    
Sbjct: 1229 QIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISA 1288

Query: 2928 ENASHLFFDCIVTRLLWDRVKKWLKFSHSMSTIAGALKWTKKEHGAPALKKARAVAVCCT 3107
            E+  HLFF C  +  +WDR+ + L      +     L     +  +   +         T
Sbjct: 1289 ESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQDFSGTKRFLLRYVFQAT 1348

Query: 3108 IYQIWKARN 3134
            I+ +W+ RN
Sbjct: 1349 IHTLWRERN 1357


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  525 bits (1353), Expect = e-146
 Identities = 304/833 (36%), Positives = 461/833 (55%), Gaps = 26/833 (3%)
 Frame = +3

Query: 216  ILTSFIYGLNTVGERRCLWNKMLELGD---LIDSPWLLLGDFNTIKNPDEKLNGEPFT-S 383
            ++ SF+Y       R+ LWN++++  +   +ID PW +LGDFN I +P E    + F   
Sbjct: 1    MVLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVD 60

Query: 384  KSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAWSNSNWRCSADI 551
            +    F +T     L+++   G  FTW N      +  +LDR L+N  W+ + +  S  +
Sbjct: 61   RPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTT-FPSSLGL 119

Query: 552  PVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW-NLNFWGKAQFIL 728
                + SDHS   +S    +    KPF+F N      +FL+ +   W + +  G A + +
Sbjct: 120  FGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRV 179

Query: 729  CKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKAKE 908
              KLKALK  +++ +  ++S I  R K+   AL  +Q  L   P  S       E + K 
Sbjct: 180  SVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEA-ETQRKW 238

Query: 909  TFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSV-ILED--GSKTSSF 1079
              LA+AE SF  Q+++ ++L   D N+ +FH   K  S R+ +N +  L D  G +    
Sbjct: 239  RILAEAEASFFYQRSRVNWLREGDMNSSYFH---KMASARQSLNHIHFLSDPVGDRIEGQ 295

Query: 1080 DDLSKAFVNYFKNLFGTSFQTSPV----DLQTLQSGPCIDEDDFNLLSSPITQQAIKIAL 1247
             +L    V YF++  G+  Q  P+    D+  L S  C      +L  +P + + IK A 
Sbjct: 296  QNLENHCVEYFQSNLGSE-QGLPLFEQADISNLLSYRCSPAQQVSL-DTPFSSEQIKNAF 353

Query: 1248 FDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDH 1427
            F +   ++ GPDGFS  FF   W ++G +V  A+ EFF S K+L+Q N T + LIPK  +
Sbjct: 354  FSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITN 413

Query: 1428 SPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEII 1607
            + +++DFRPI+C N VYKVI+K+L  +L+  +P  I  +QSAF+ GR   +N+ LA E++
Sbjct: 414  ASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELV 473

Query: 1608 RNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICI 1787
              Y +  I+P   +KVDL+KA+D++ W F+   L  L  P  F  W++EC+STAS+S+ +
Sbjct: 474  HGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVIL 533

Query: 1788 NGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLA 1967
            NG   G F   +GLRQGDPMSP LF+L ME  S LL+ R  +    YHP+   L+I+HL 
Sbjct: 534  NGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLM 593

Query: 1968 FADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILNLLNF 2147
            FADD+M+F  G   S+  +++ L DF   SGL +N+ K+ L+ AG+   + D++ +   F
Sbjct: 594  FADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMAS-YGF 652

Query: 2148 PLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVE 2327
             LG+LPVRYLG+PL ++KL +  YAPL ++I +  N W    LS+AGR+ L+ SV+ G+ 
Sbjct: 653  KLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIV 712

Query: 2328 CFWLQIFPLPSTVIDRINRLCRVFLWG-----KNTSPIKWSKVCLPFDEGGLGLRDVHSW 2492
             FW+  F LP   I +I  LC  FLW      K  + + WS+VCLP  EGG+GLR     
Sbjct: 713  NFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVS 772

Query: 2493 NKALLAKILWNIHSKADSLWVRWVHSFYL-KNQSIWTWDPKKSDS----CLLK 2636
            N+ L  +++W + S + SLWV W     L K+ S W    K  DS    CLL+
Sbjct: 773  NRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLR 825


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  522 bits (1345), Expect = e-145
 Identities = 287/796 (36%), Positives = 446/796 (56%), Gaps = 17/796 (2%)
 Frame = +3

Query: 318  LLGDFNTIKNPDEKLNGEPFT-SKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IW 482
            +LGDFN +  P E  N       + + +F    + + LS++   G  FTW N +    I 
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 483  CRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHP 662
             +LDR L N +W N  +  S  +    + SDH    V      +   +PFKFFN    + 
Sbjct: 61   KKLDRILANDSWCNL-YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119

Query: 663  DFLNTVQTAW-NLNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQ 839
            DFLN V   W + N  G + + + KKLKA+K  +K+ +  ++S I  R K+    L   Q
Sbjct: 120  DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179

Query: 840  IQLHTDPLNSALCDSVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIK 1013
               +    N ++ ++  EL+A  K   L+ AE SF  Q+++  +    D NT +FH ++ 
Sbjct: 180  ---NLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 1014 RNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGT---SFQTSPVDLQTLQSGPCI 1184
                   +NS++  +G    S   +    V Y++ L G+    F     D+  L +  C 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC- 295

Query: 1185 DEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFD 1364
             +D  + L    T   IK A   +   ++ GPDG+S  FF+ +W ++G +V+AA+ EFFD
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 1365 SSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPA 1544
            S ++L+Q N T + LIPKT ++ T+++FRPI+C N +YKVI+K+L S+L+ ++  +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 1545 QSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGF 1724
            QSAF+ GR++ +N+ LA E++  Y R+ ISPR  +KVDLKKA+D++ W F+   L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 1725 PPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVR 1904
            P  +I+W+ +C++T S++I +NG+  G F   +GLRQGDP+SP LF+L ME  S+LL  R
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 1905 TNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKS 2084
             ++    YHP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 2085 NLFTAGIVGDKLDNILN-LLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKW 2261
             LF AG+  D  + I +    FP GT P+RYLG+PL  +KL +  Y PL +++++ +  W
Sbjct: 596  QLFQAGL--DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSW 653

Query: 2262 TANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPI 2426
             + +LS+AGR  LI SV+ G+  FW+  F LP   I +I  LC  FLW     G+ +S +
Sbjct: 654  VSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKV 713

Query: 2427 KWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWD 2606
             W   CLP  EGGLG R    WNK LL +++W +  +  SLW +W     L + S W  +
Sbjct: 714  SWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVN 773

Query: 2607 PKKSDSCLLKRICDIR 2654
              ++D    K + ++R
Sbjct: 774  ALQTDPWTWKMLLNLR 789



 Score = 60.5 bits (145), Expect = 7e-06
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 3/168 (1%)
 Frame = +3

Query: 2724 KGLCSSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKY--LDVD 2897
            +G  ++K +++ R   P   W  +VW     PK++F  W A  +RL T   L    L   
Sbjct: 890  QGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSS 949

Query: 2898 PTCKLCGNYLENASHLFFDCIVTRLLWDRV-KKWLKFSHSMSTIAGALKWTKKEHGAPAL 3074
              C LC    E   HL   C  +  +W  V  +       + T A  L WT++   A A 
Sbjct: 950  AECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAA-AP 1008

Query: 3075 KKARAVAVCCTIYQIWKARNCQVFEGLNFAEDTVFLKIQKDVYKVVFN 3218
               R V     +Y +W+ RN  +   L  +   VF  + +++  V+ +
Sbjct: 1009 SLLRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  522 bits (1345), Expect = e-145
 Identities = 287/796 (36%), Positives = 446/796 (56%), Gaps = 17/796 (2%)
 Frame = +3

Query: 318  LLGDFNTIKNPDEKLNGEPFT-SKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IW 482
            +LGDFN +  P E  N       + + +F    + + LS++   G  FTW N +    I 
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 483  CRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHP 662
             +LDR L N +W N  +  S  +    + SDH    V      +   +PFKFFN    + 
Sbjct: 61   KKLDRILANDSWCNL-YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119

Query: 663  DFLNTVQTAW-NLNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQ 839
            DFLN V   W + N  G + + + KKLKA+K  +K+ +  ++S I  R K+    L   Q
Sbjct: 120  DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179

Query: 840  IQLHTDPLNSALCDSVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIK 1013
               +    N ++ ++  EL+A  K   L+ AE SF  Q+++  +    D NT +FH ++ 
Sbjct: 180  ---NLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 1014 RNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGT---SFQTSPVDLQTLQSGPCI 1184
                   +NS++  +G    S   +    V Y++ L G+    F     D+  L +  C 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC- 295

Query: 1185 DEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFD 1364
             +D  + L    T   IK A   +   ++ GPDG+S  FF+ +W ++G +V+AA+ EFFD
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 1365 SSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPA 1544
            S ++L+Q N T + LIPKT ++ T+++FRPI+C N +YKVI+K+L S+L+ ++  +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 1545 QSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGF 1724
            QSAF+ GR++ +N+ LA E++  Y R+ ISPR  +KVDLKKA+D++ W F+   L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 1725 PPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVR 1904
            P  +I+W+ +C++T S++I +NG+  G F   +GLRQGDP+SP LF+L ME  S+LL  R
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 1905 TNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKS 2084
             ++    YHP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 2085 NLFTAGIVGDKLDNILN-LLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKW 2261
             LF AG+  D  + I +    FP GT P+RYLG+PL  +KL +  Y PL +++++ +  W
Sbjct: 596  QLFQAGL--DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSW 653

Query: 2262 TANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPI 2426
             + +LS+AGR  LI SV+ G+  FW+  F LP   I +I  LC  FLW     G+ +S +
Sbjct: 654  VSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKV 713

Query: 2427 KWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWD 2606
             W   CLP  EGGLG R    WNK LL +++W +  +  SLW +W     L + S W  +
Sbjct: 714  SWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVN 773

Query: 2607 PKKSDSCLLKRICDIR 2654
              ++D    K + ++R
Sbjct: 774  ALQTDPWTWKMLLNLR 789



 Score = 60.1 bits (144), Expect = 9e-06
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 3/168 (1%)
 Frame = +3

Query: 2724 KGLCSSKMYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKY--LDVD 2897
            +G  ++K +++ R   P   W  +VW     PK++F  W A  +RL T   L    L   
Sbjct: 890  QGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSS 949

Query: 2898 PTCKLCGNYLENASHLFFDCIVTRLLWDRV-KKWLKFSHSMSTIAGALKWTKKEHGAPAL 3074
              C LC    E   HL   C  +  +W  V  +       + T A  L WT++   A A 
Sbjct: 950  AECCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAA-AP 1008

Query: 3075 KKARAVAVCCTIYQIWKARNCQVFEGLNFAEDTVFLKIQKDVYKVVFN 3218
               R V     +Y +W+ RN  +   L  +   VF  + +++  V+ +
Sbjct: 1009 SLLRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  518 bits (1333), Expect = e-143
 Identities = 308/860 (35%), Positives = 467/860 (54%), Gaps = 26/860 (3%)
 Frame = +3

Query: 51   VQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSF 230
            + N  PGW    N+     G+I +LW+ S V + V+    Q+I C L    S +  + S 
Sbjct: 50   ISNLLPGWSFVENYEFSVLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSI 108

Query: 231  IYGLNTVGERRCLWNKMLELG---DLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEF 401
            +Y  N  G R+ LWN++++L     ++   W++LGDFN I NP+  +N      + +  F
Sbjct: 109  VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAF 166

Query: 402  HDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAWSNSNWRCSADIPVPGNV 569
                    L ++   G  +TW N      +  ++DR L+N  W+       A+   P + 
Sbjct: 167  RSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEP-DF 225

Query: 570  SDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW-NLNFWGKAQFILCKKLKA 746
            SDHS   V      L   +PF+FFN +  +PDFL  ++  W + N  G A + + KKLK 
Sbjct: 226  SDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKH 285

Query: 747  LKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKA--KETFLA 920
            LK  +   +  ++S I  RV +    + + Q    T+P   ++  +  EL+A  K   LA
Sbjct: 286  LKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNP---SVVHATLELEATRKWQILA 342

Query: 921  KAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSV--ILED-GSKTSSFDDLS 1091
            KAE SF  QK+   +L   D NT +FH   K   +RK +N++  +++D G +  +   + 
Sbjct: 343  KAEESFFCQKSSISWLYEGDNNTAYFH---KMADMRKSINTINFLIDDFGERIETQQGIK 399

Query: 1092 KAF----VNYFKNLF-GTSFQTSPV--DLQTLQSGPCIDEDDFNLLSSPITQQAIKIALF 1250
            +       N+F++L  G   + S    D+  L S  C   D  N L    +   I+ A F
Sbjct: 400  EGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEAFF 458

Query: 1251 DIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHS 1430
             +   ++ GPDG+SS FFK  W VVG +V  AV EFF S ++L+Q N T + LIPK  +S
Sbjct: 459  SLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNS 518

Query: 1431 PTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIR 1610
              + DFRPI+C N +YKVI K+L S+L+ ++ ++I P+QSAF+ GR +++N+ LA EI+ 
Sbjct: 519  SKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVH 578

Query: 1611 NYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICIN 1790
             Y    IS R  +KVDL+KA+D++ W F+      L  P  F+ W+ +C+ST  +S+ +N
Sbjct: 579  GYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVN 638

Query: 1791 GSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAF 1970
            GS  G F   +GLRQGDP+SP LF+L ME  S LLK R +     YHP+   L I+HL F
Sbjct: 639  GSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMF 698

Query: 1971 ADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNI-LNLLNF 2147
            ADD+M+F  G   S+  + + L+DF + SGL VN  K+NL+ AG   D+++ + ++   F
Sbjct: 699  ADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT--DEVEALAISHYGF 756

Query: 2148 PLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVE 2327
            P+ TLP+RYLG+PL ++KL ++ Y      +      W   SLS+AGR+ LI SV+ G+ 
Sbjct: 757  PISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLV 811

Query: 2328 CFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPIKWSKVCLPFDEGGLGLRDVHSW 2492
             FW+  F L    + +I  LC  FLW         + I WS VCLP +EGG+GLR    W
Sbjct: 812  NFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPW 871

Query: 2493 NKALLAKILWNIHSKADSLW 2552
            NK    + +W + +  D LW
Sbjct: 872  NKTFYLRFIWPLFADNDVLW 891


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  518 bits (1333), Expect = e-143
 Identities = 340/1113 (30%), Positives = 524/1113 (47%), Gaps = 102/1113 (9%)
 Frame = +3

Query: 108  GRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSFIYGLNTVGERRCLWNKMLE 287
            GRI ++W  +     V  +  Q+I C +  +  +     SFIY  N V ERR LW  +  
Sbjct: 428  GRIWVVWRDNARLTPVFKSS-QMITCSILLEGKEEEFFCSFIYASNFVEERRILWEDIRS 486

Query: 288  LGD---LIDSPWLLLGDFNTIKNPDEKLN--GEPFTSKSVEEFHDTCAYLGLSEVQSTGC 452
              D   + + PW+L GDFN I    E  N    P+T              G+ + Q  G 
Sbjct: 487  HHDSPLIRNKPWILCGDFNEILEGGEHSNYDNSPYTPP------------GMRDFQEIG- 533

Query: 453  YFTWTNNTIWCRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPF 632
                          R ++ +A +                                  KPF
Sbjct: 534  --------------RLMLEAAATGGR-------------------------------KPF 548

Query: 633  KFFNMWALHPDFLNTVQTAWN----LNFWGKAQFILCKKLKALKPSLKELNNFHFSHISS 800
            KF N+    P FL  V++ W     L     A +   KKLK LKP L+EL       +  
Sbjct: 549  KFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLPK 608

Query: 801  RVKQVKTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSD 980
            R ++    L   Q     +P    + + +K      T L++ E  FL QK+K  ++N  D
Sbjct: 609  RTREAHILLCEKQATTLANPSQETIAEELKAY-TDWTHLSELEEGFLKQKSKLHWMNVGD 667

Query: 981  RNTKFFHSIIKRNSLRKQMNSVILEDGSKTSSFDDL---SKAFVNYFKNLFGTSFQTSPV 1151
             N  +FH   +   +R  +  +   +     + +++   ++ F N F N     F    V
Sbjct: 668  GNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGISV 727

Query: 1152 -DLQTLQSGPCIDEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVG 1328
             DL+ L S  C   D  N+L+  +T + I+  LF + + +SPGPDG++S FFK +W + G
Sbjct: 728  EDLRNLMSYRCSVTDQ-NILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTG 786

Query: 1329 NDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASK 1508
             D IAA+  FF    + + +N T +ALIPK D +  + D+RPI+CCNV+YKVI+KILA++
Sbjct: 787  PDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANR 846

Query: 1509 LESVVPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISW 1688
            L+ ++P  I   QSAF+  R + +N+ LA E++++Y +  ++PRCA+K+D+ KA+D++ W
Sbjct: 847  LKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQW 906

Query: 1689 SFLEQVLNGLGFPPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLL 1868
             FL   L  L FP  F  W+  C+STA++S+ +NG L G F   RGLRQG  +SP LF++
Sbjct: 907  QFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVI 966

Query: 1869 CMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFK 2048
            CM  LS ++          YHP+CE + +THL FADDLM+F  G   S++ +I+   +F 
Sbjct: 967  CMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFA 1026

Query: 2049 NASGLDVNSFKSNLFTAGIVGDKLDNILNLLNFPL--GTLPVRYLGVPLAAQKLNVNHYA 2222
              SGL ++  KS ++ AG+     D +  L +FP   G LPVRYLG+PL  +++    Y+
Sbjct: 1027 GRSGLQISLEKSTIYLAGVSAS--DRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYS 1084

Query: 2223 PLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFL 2402
            PL + + + I+ WTA SLSYAGRL L+ SV+  +  FW+  + LP+  I  I +LC  FL
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFL 1144

Query: 2403 W-----GKNTSPIKWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVH 2567
            W         + I WS +C P  EGGLG++ +   NK    K++W + S   SLWV W+ 
Sbjct: 1145 WSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIW 1204

Query: 2568 SFYLKNQSIWTWDPKKS-DSCLLKRICDIR------NEILAKFGS--------------- 2681
            +F ++  + W+ + + S  S + K++   R      +++  + GS               
Sbjct: 1205 TFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRL 1264

Query: 2682 ---------LDLAI---SNL-------------SLFANSKGLCSSKMYDLFREAGP---- 2774
                     +DL I   +NL             +   N       ++    REAGP    
Sbjct: 1265 LDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISL 1324

Query: 2775 ---------KTFWHSAVWKN-----------------FIPPKYSFCVWLAFNDRLATINN 2876
                     K F     W N                 +  PKYSF +WL   +RL+T + 
Sbjct: 1325 WRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDR 1384

Query: 2877 LKYLDVDP--TCKLCGNYLENASHLFFDCIVTRLLWDRVKKWL---KFSHSMSTIAGALK 3041
            +K  +     TC LC N  E   HLFF C  T  +W+ + + L    +S   + +   L 
Sbjct: 1385 IKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLC 1444

Query: 3042 WTKKEHGAPALKKARAVAVCCTIYQIWKARNCQ 3140
             +        L +        +IY IW+ RN +
Sbjct: 1445 TSNLPRDHLFLFR---YVFQASIYHIWRERNAR 1474


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  516 bits (1329), Expect = e-143
 Identities = 307/860 (35%), Positives = 467/860 (54%), Gaps = 26/860 (3%)
 Frame = +3

Query: 51   VQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSF 230
            + N  PGW    N+     G+I +LW+ S V + V+    Q+I C L    S +  + S 
Sbjct: 50   ISNLLPGWSFVENYEFSVLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSI 108

Query: 231  IYGLNTVGERRCLWNKMLELG---DLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEF 401
            +Y  N  G R+ LWN++++L     ++   W++LGDFN I NP+  +N      + +  F
Sbjct: 109  VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAF 166

Query: 402  HDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAWSNSNWRCSADIPVPGNV 569
                    L ++   G  +TW N      +  ++DR L+N  W+       A+   P + 
Sbjct: 167  RSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEP-DF 225

Query: 570  SDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW-NLNFWGKAQFILCKKLKA 746
            SDHS   V      L   +PF+FFN +  +PDFL  ++  W + N  G A + + KKLK 
Sbjct: 226  SDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKH 285

Query: 747  LKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKA--KETFLA 920
            LK  +   +  ++S I  RV +    + + Q    T+P   ++  +  EL+A  K   LA
Sbjct: 286  LKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNP---SVVHATLELEATRKWQILA 342

Query: 921  KAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSV--ILED-GSKTSSFDDLS 1091
            KAE SF  QK+   +L   D NT +FH   K   +RK +N++  +++D G +  +   + 
Sbjct: 343  KAEESFFCQKSSISWLYEGDNNTAYFH---KMADMRKSINTINFLIDDFGERIETQQGIK 399

Query: 1092 KAF----VNYFKNLF-GTSFQTSPV--DLQTLQSGPCIDEDDFNLLSSPITQQAIKIALF 1250
            +       N+F++L  G   + S    D+  L S  C   D  N L    +   I+ A F
Sbjct: 400  EGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEAFF 458

Query: 1251 DIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHS 1430
             +   ++ GPDG+SS FFK  W VVG +V  AV EFF S ++L+Q N T + LIPK  +S
Sbjct: 459  SLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNS 518

Query: 1431 PTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIR 1610
              + DFRPI+C N +YKVI K+L S+L+ ++ ++I P+QSAF+ GR +++N+ LA EI+ 
Sbjct: 519  SKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVH 578

Query: 1611 NYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICIN 1790
             Y    IS R  +KVDL+KA+D++ W F+      L  P  F+ W+ +C+ST  +S+ +N
Sbjct: 579  GYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVN 638

Query: 1791 GSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAF 1970
            GS  G F   +GLRQGDP+SP LF+L ME  S LLK R +    +YHP+   L I+HL F
Sbjct: 639  GSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMF 698

Query: 1971 ADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNI-LNLLNF 2147
            ADD+M+F  G   S+  + + L+DF + SGL VN  K+NL+ AG   D+++ + ++   F
Sbjct: 699  ADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT--DEVEALAISHYGF 756

Query: 2148 PLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVE 2327
            P+ TLP+RYLG+PL ++KL ++ Y      +      W   SLS+AGR+ LI SV+ G+ 
Sbjct: 757  PISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLV 811

Query: 2328 CFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPIKWSKVCLPFDEGGLGLRDVHSW 2492
             FW+  F L    + +I  LC  FLW         + I WS VCLP +EGG+ LR    W
Sbjct: 812  NFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPW 871

Query: 2493 NKALLAKILWNIHSKADSLW 2552
            NK    + +W + +  D LW
Sbjct: 872  NKTFYLRFIWPLFADNDVLW 891


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  504 bits (1299), Expect = e-139
 Identities = 316/975 (32%), Positives = 469/975 (48%), Gaps = 14/975 (1%)
 Frame = +3

Query: 318  LLGDFNTIKNPDEKLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNTIWCRLDR 497
            ++GDFN  +  +E + G    + +++EF+                               
Sbjct: 95   VIGDFNVTRRCEETIGGNSRFTNAMDEFNS------------------------------ 124

Query: 498  ALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNT 677
             L NS   + N+   + +P PG +SDH+ +VV       +   PFKFFN  A   DF+  
Sbjct: 125  CLHNSKLDDLNYSVLSFLP-PG-ISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPI 182

Query: 678  VQTAWNLNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTD 857
            V   W  N WG  QF + +KLK +K   K LN                            
Sbjct: 183  VSAVWATNVWGSKQFQVWRKLKLVKNQFKLLN---------------------------- 214

Query: 858  PLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQM 1037
                  C+ V++L              L +K++  +L   D+N+ FF   + ++  R ++
Sbjct: 215  ------CNVVEKL--------------LKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRI 254

Query: 1038 NSVILEDGSKTSSFDDLSKAFVNYFKNLFGTSFQTSPVDLQTLQSGPCIDEDDFNLLSSP 1217
             ++   DG       DL+K+  N F                                   
Sbjct: 255  ATINRSDGP------DLAKSLCNEF----------------------------------- 273

Query: 1218 ITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAA-VSEFFDSSKILRQINH 1394
             T   I+   F +   +SPGPDGF+  FF+K+W V+G++V+AA V EFF    +L ++N 
Sbjct: 274  -THDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNS 332

Query: 1395 TAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNI 1574
            T I L+PK  +  T++DFRPI+CCN  YK+I K+LA++L+  +  ++ P+QS FI GR I
Sbjct: 333  TIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRI 392

Query: 1575 TDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVME 1754
             DNI LAQEII +Y +    PRC   VD+ KA DT+ W F+   L     P   I W+  
Sbjct: 393  GDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKS 452

Query: 1755 CVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTS-TFKYH 1931
            C+S+A +S+C+NG L G F  +RGLRQGDP+SP LF++ ME LS  ++ R N S  F+YH
Sbjct: 453  CISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYH 512

Query: 1932 PRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVG 2111
             RC+ L ++HL FADDL++F  GD  SV+ L D  ++F++ S L  N  +S +F AG+ G
Sbjct: 513  WRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDG 572

Query: 2112 DKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGR 2291
            +  D++L + NF LGT PVRYLG+PL   KL +   +PL DRI + I  W    LS+AGR
Sbjct: 573  NSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGR 632

Query: 2292 LLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLW-----GKNTSPIKWSKVCLPFD 2456
            L LI+SVL  ++ +W     LP  V+  I +  R FLW     G+  + + WS++CLP  
Sbjct: 633  LQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKC 692

Query: 2457 EGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQSIWTWDPKKSDSCLLK 2636
            EGGLG++D+H WNKAL+   +WN+ S + + W  WV  + LK  S W        +  L 
Sbjct: 693  EGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFW--------NAPLP 744

Query: 2637 RICDIRNEILAKFGSLDLAISNLSLFAN--SKGLCSSKMYDLFREAGPKTF-WHSAVWKN 2807
             IC      L K   L       S F N    G  +S  +D +   GP T  W S +   
Sbjct: 745  SICSWNWRKLLKIREL-----CCSFFVNIIGDGRATSLWFDNWHPLGPLTLRWSSNIIGE 799

Query: 2808 FIPPKYSFCVWLAFNDRLATINNLK-YLDVDPTCKLCGNYLENASHLFFDCIVTRLLWDR 2984
                K +      F    +  N L+    + P  +L     E  +HLFFDC  +  +W  
Sbjct: 800  SGLSKSAMLTPNGFYSTSSAWNTLRPSRFIVPWYRLVWFVAETHNHLFFDCAYSFGIWTH 859

Query: 2985 VKKWLKFSHSMSTIAGALKWTK---KEHGAPALKKARAVAVCCTIYQIWKARNCQVFEGL 3155
            V      S  +   +  + W     K +  P +     +A+   +Y IW+ RN + F   
Sbjct: 860  VLSKCDVSKPLLPWSDFIFWVATNWKGNSLPVV--ILKLALQAVVYAIWRERNNRRFRNE 917

Query: 3156 NFAEDTVFLKIQKDV 3200
            +     VF  I + +
Sbjct: 918  SLPPAVVFKGIVESI 932


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  503 bits (1296), Expect = e-139
 Identities = 341/1074 (31%), Positives = 520/1074 (48%), Gaps = 28/1074 (2%)
 Frame = +3

Query: 6    LETEVVPQSNRCDFIVQNKFPGWLATNNFHLIKNGRILILWNSSTVDLQVLDTDPQLIHC 185
            LET V  ++   + ++ +  PGW   +N+   + GRI I+W+ S   L    TD Q++ C
Sbjct: 78   LETHVAQEN--ANSVLASTLPGWRMDSNYCCSELGRIWIVWDPSISVLVFKRTD-QIMFC 134

Query: 186  CLTCKISQNSILTSFIYGLNTVGERRCLWNKMLELG---DLIDSPWLLLGDFNTIKNPDE 356
             +       S   +F+YG N+  +RR LW  +L L     L  +PWLLLGDFN I    E
Sbjct: 135  SIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASE 194

Query: 357  --KLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCYFTWTN----NTIWCRLDRALINSAW 518
               +N      + +E+         LS++ S G +FTW+N    N I  +LDRAL N  W
Sbjct: 195  HYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEW 254

Query: 519  SNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAWNL 698
                    A    PG+ SDH+P ++    Q     K FK+F+  + HP +L  + TAW  
Sbjct: 255  FAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEE 313

Query: 699  N-FWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSAL 875
            N   G   F L + LK  K   + LN   FS+I  R  Q  T L++ Q++L T P +  L
Sbjct: 314  NTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSP-SDTL 372

Query: 876  CDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILE 1055
                   + +  F A A  SF  QK++  +L+  D NT+FFH  +  +     +  +  +
Sbjct: 373  FRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGD 432

Query: 1056 DGSKTSSFDDLSKAFVNYFKNLFGT-SFQTSPVDLQTLQSGPCIDEDDFNLLSSPIT--- 1223
            DG +  + D +    + Y+ +L G  S   +P  ++ ++       D F  L+S +T   
Sbjct: 433  DGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSF--LASQLTTIP 490

Query: 1224 -QQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTA 1400
             ++ I   LF +   ++PGPDGF   FF ++W +V + V+AA+ EFF S  + R  N TA
Sbjct: 491  SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 550

Query: 1401 IALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITD 1580
            I LIPK   +  +  FRP+ACC  +YKVIT+I++ +L+  + + +   Q  FI GR + +
Sbjct: 551  ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 610

Query: 1581 NIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECV 1760
            N+ LA E++ N+     + R  ++VD+ KAYD ++W FL  +L  L  P +FI W+  C+
Sbjct: 611  NVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCI 670

Query: 1761 STASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRC 1940
            S+ASYSI  NG L G F GK+G+RQGDPMS  LF+L M+ LS+ L +      F  HP C
Sbjct: 671  SSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNC 730

Query: 1941 ETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKL 2120
                ITHL+FADD+++FS G   S+  ++  L+DF+  SGL +N  K+ L   G    + 
Sbjct: 731  LAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARN 790

Query: 2121 DNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLL 2300
             ++ + L    G+LPVRYLGVPL +QK+    Y PL DRI S    WTA  LS+AGRL L
Sbjct: 791  RSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQL 850

Query: 2301 IKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLWGKNTSPIKWSKVCLPFDEGGLGLRD 2480
            +  + +  +   L+ F  P  +I  +        W  N     W+      D G L    
Sbjct: 851  LNWIWR--KLCKLRPFARP-FIICEVGSGVTASFWHDN-----WT------DHGPL---- 892

Query: 2481 VHSWNKA--LLAKILWNI---HSKADSLWVRWVHSFYLKNQSIWTWDPKKSDSCLLKRIC 2645
            +H    A  LLA +  N     +  D  W                   + S S     + 
Sbjct: 893  LHLTGPAGPLLAGLPLNSVVRDALRDDTW-------------------RISSSRSRNPVI 933

Query: 2646 DIRNEILAKFGSL------DLAISNLSLFANSKGLCSSKMYDLFREAGPKTFWHSAVWKN 2807
             +   +L    SL      D  +  +   A S    ++  +   + +     WH AVW  
Sbjct: 934  TLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFK 993

Query: 2808 FIPPKYSFCVWLAFNDRLATINNLKY--LDVDPTCKLCGNYLENASHLFFDCIVTRLLWD 2981
               PK +F  W+  ++RL T + L+     + PTC LC +  E+  HLFF C  +  +W 
Sbjct: 994  DHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEIWS 1053

Query: 2982 RVKKWLKFSHSMSTIAGALKWTKKEHGAPALKKARAVAVCCTIYQIWKARNCQV 3143
               + L   +        L WT        +     +    ++Y IW+ RN ++
Sbjct: 1054 FFMRALNL-NPPPQFMHCLLWTLTASRDRNITLITKLLFHASVYFIWRERNLRI 1106


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  501 bits (1289), Expect = e-138
 Identities = 331/1048 (31%), Positives = 521/1048 (49%), Gaps = 51/1048 (4%)
 Frame = +3

Query: 210  NSILTSFIYGLNTVGERRCLWNKMLELGDLIDS---PWLLLGDFNTIKNPDEKLNGEPFT 380
            +S++ S +Y  N    R+ LW ++L L   +     PW++LGDFN +  P E        
Sbjct: 51   DSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLN 110

Query: 381  -SKSVEEFHDTCAYLGLSEVQSTGCYFTWTNNT----IWCRLDRALINSAWSNSNWRCSA 545
             ++ ++ F D      L ++   G  FTW N +    +  +LDR L+N +W +      A
Sbjct: 111  VNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYA 170

Query: 546  DIPVPGNVSDHSPIVVSFFEQNLVLSKPFKFFNMWALHPDFLNTVQTAW-NLNFWGKAQF 722
                P + SDH+   V          +PF+F+N    +PDF++ V   W ++N  G + F
Sbjct: 171  VFGEP-DFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMF 229

Query: 723  ILCKKLKALKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPL--NSALCDSVKEL 896
             + KKLKALK  ++  +  +FS++  RVK+    +   Q +  +DP   N+AL     E 
Sbjct: 230  KMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAAL---EMEA 286

Query: 897  KAKETFLAKAERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILEDGSKTSS 1076
            + K   L KAE SF  Q+++  ++   D NT +FH +         ++ +I ++G K  +
Sbjct: 287  QRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDT 346

Query: 1077 FDDLSKAFVNYFKNLFGTSFQTSPV---DLQTLQSGPCIDEDDFNLLSSPITQQAIKIAL 1247
               + +  + YF NL G       +   D   L    C   D    L+   ++Q IK A 
Sbjct: 347  QLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRC-SHDQKKELAMSFSRQDIKSAF 405

Query: 1248 FDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDH 1427
            F     ++ GPDGF   FFK++W V+G +V  AVSEFF SS +L+Q N T + LIPK  +
Sbjct: 406  FSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITN 465

Query: 1428 SPTVADFRPIACCN----VVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLA 1595
            +  + DFRPI+C +     +YKVI ++L ++L+ ++ ++I P QSAF+ GR + +N+ LA
Sbjct: 466  ASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLA 525

Query: 1596 QEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASY 1775
             E+++ Y R  I PR  +KVDL+KA+D+I W F+   L  +G P  F+ W+ +C+ST ++
Sbjct: 526  TELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTF 585

Query: 1776 SICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKI 1955
            S+C+NG+  G F   RGLRQG+P+SP LF+L ME  S LL  R       YHP+   L I
Sbjct: 586  SVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSI 645

Query: 1956 THLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILN 2135
            +HL FADD+M+F  G   S+  + + L DF   SGL +N  K++L+ AG+  D+++    
Sbjct: 646  SHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGL--DRIE---- 699

Query: 2136 LLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVL 2315
                               A+KL +  Y PL +++A     W+   LS+AGR+ LI SV+
Sbjct: 700  ---------------ASTIARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVI 744

Query: 2316 QGVECFWLQIFPLPSTVIDRINRLCRVFLWG-----KNTSPIKWSKVCLPFDEGGLGLRD 2480
             G+  FW+  F LP   + RI  LC  FLW      K  + + WS+VCLP +EGG+GLR 
Sbjct: 745  SGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLR- 803

Query: 2481 VHSWNKALLAKILWNIHSKADSLWV-RWV---HSFYLKNQS------------------- 2591
                   +L   LW+   K  S W   W      F L   S                   
Sbjct: 804  ----RFTVLNTTLWD--GKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSD 857

Query: 2592 -IWTWDPKKSDSCLLKRICDIRNEILAKFGSLDLAISNLSLFANSKGLCSSKMYDLFREA 2768
              W   P ++D  L   I      +     S D  +  +  F    G  +++ ++  R  
Sbjct: 858  VGWLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVDDF-TCHGFSAARTWEAMRPK 916

Query: 2769 GPKTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKYLDVDPT--CKLCGNYLENASH 2942
             P   W  +VW     PK++F +W++  +RL T   L    V  T  C LC +  E+  H
Sbjct: 917  KPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDH 976

Query: 2943 LFFDCIVTRLLWDRVKKWLKFSHSM-STIAGALKWTK-KEHGAPALKKARAVAVCCTIYQ 3116
            L   C+ + ++W  V   L  S ++ ++ A  L WT+     AP+L   R +A   +++ 
Sbjct: 977  LLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAPSL--LRKIAAQASVFH 1034

Query: 3117 IWKARNCQVFEGLNFAEDTVFLKIQKDV 3200
            +WK RN  +   +  +  TVF  I +++
Sbjct: 1035 LWKQRNNVLHNSIFISPATVFHFIDREL 1062


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  483 bits (1243), Expect = e-133
 Identities = 277/817 (33%), Positives = 416/817 (50%), Gaps = 98/817 (11%)
 Frame = +3

Query: 978  DRNTKFFHSIIKRNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGTSFQTSPVDL 1157
            DRN K FH  I        +  ++  DG   +S  D+    VNYF++      QT P D 
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFL----QTIPADY 146

Query: 1158 QTLQSGPCIDE-----------DDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFF 1304
            +    G C++E           DD  LL+  +T + IK  +F +  ++SPGPDG++S F+
Sbjct: 147  E----GMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFY 202

Query: 1305 KKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKV 1484
            K SW+++G++VI A+  FF    + + +N T +ALIPK   +  + D+RPI+CCNV+YK 
Sbjct: 203  KASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKA 262

Query: 1485 ITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLK 1664
            I+KILA++L+ ++PK I   QSAF+  R + +N+ LA E++++Y +  IS RCA+K+D+ 
Sbjct: 263  ISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDIS 322

Query: 1665 KAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDP 1844
            KA+D++ WSFL  VL  + FP  FI W+  C+STAS+SI +NG L G F   RGLRQG  
Sbjct: 323  KAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCS 382

Query: 1845 MSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKIL 2024
            +SP LF++ M+ LSR+L        F YHPRC+TL +THL FADDLM+ + G + SV  +
Sbjct: 383  LSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGI 442

Query: 2025 IDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKL 2204
            +  LN F    GL +   K+ L+ AG+       + +  +F +G LPVRYLG+PL  ++L
Sbjct: 443  VKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRL 502

Query: 2205 NVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINR 2384
              + Y+PL D+I   I  WT+  LS+AGRL LI SVL  +  FW+  F LP   I+ INR
Sbjct: 503  TTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINR 562

Query: 2385 LCRVFLW-GKNTSP----IKWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSL 2549
            +    LW G   +P    + W ++C P  EGGLGL+ +   NK    K++W + S  DSL
Sbjct: 563  ISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSL 622

Query: 2550 WVRWVHSFYLKNQSI-----------WTWDPKKSDSCLLKRIC--DIRNEILAKF----- 2675
            WV+W     LK +S            W W        + K  C  ++ N +   F     
Sbjct: 623  WVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNW 682

Query: 2676 -------------GSLDLAISNLSLFANS------------------------------- 2723
                         G++D+ IS     A +                               
Sbjct: 683  SEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIE 742

Query: 2724 --------------KGLCSSK-MYDLFREAGPKTFWHSAVWKNFIPPKYSFCVWLAFNDR 2858
                          K   S+K  ++  R +  +  WH  VW     PK+SFC WLA  +R
Sbjct: 743  LEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNR 802

Query: 2859 LATINNLKYLD--VDPTCKLCGNYLENASHLFFDCIVTRLLWDRVKKWL---KFSHSMST 3023
            L+T + +   +     TC  C + +E   HLFF C  +  +W  + K +   +FS   S 
Sbjct: 803  LSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSA 862

Query: 3024 IAGALKWTKKEHGAPALKKARAVAVCCTIYQIWKARN 3134
            +   +  ++ +     L +        +I+ IW+ RN
Sbjct: 863  VVNYISDSQPDRIQSFLSR---YTFQVSIHSIWRERN 896


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  476 bits (1224), Expect = e-131
 Identities = 275/820 (33%), Positives = 438/820 (53%), Gaps = 27/820 (3%)
 Frame = +3

Query: 255  ERRCLWNKMLELGD---LIDSPWLLLGDFNTIKNPDEKLNGE--PFTSKSVEEFHDTCAY 419
            ER+ LWN + +  D   +   PW++ GDFN I + +E  N    P T+  + +F     +
Sbjct: 3    ERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNH 62

Query: 420  LGLSEVQSTGCYFTWTN----NTIWCRLDRALINSAWSNSNWRCSADIPVPGNVSDH--S 581
              ++++   G  FTW+N    + I  +LDR L+N  W  S  R S  +   G  SDH   
Sbjct: 63   CSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPR-SYSVFEAGGCSDHLRC 121

Query: 582  PIVVSFFEQNLVLSK-PFKFFNMWALHPDFLNTVQTAWN----LNFWGKAQFILCKKLKA 746
             I ++     +V  K PFKF N+      F+ TV++ WN    +     + F   KKLK 
Sbjct: 122  RINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKG 181

Query: 747  LKPSLKELNNFHFSHISSRVKQVKTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAKA 926
            LKP L+ L      ++  + K+    L   Q     +P  S++ +   E  AK   +A  
Sbjct: 182  LKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEE-NEAYAKWDHIAVL 240

Query: 927  ERSFLSQKAKCDFLNNSDRNTKFFHSIIKRNSLRKQMNSVILEDGSKTSSFDDLSKAFVN 1106
            E  FL Q++K  +L+  DRN K FH  +     +  +  +I  DGS  S  + +     +
Sbjct: 241  EEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEH 300

Query: 1107 YFKN---LFGTSFQTSPVD-LQTLQSGPCIDEDDFNLLSSPITQQAIKIALFDIEDERSP 1274
            +F+    L    F+   V+ LQ L    C D D   +L++ ++ + I   +F + +++SP
Sbjct: 301  HFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDK-EMLTNHVSAEEIHKVVFSMPNDKSP 359

Query: 1275 GPDGFSSGFFKKSWDVVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRP 1454
            GPDG+++ F+K +W+++G + I A+  FF    + + IN T +ALIPK   +  + D+RP
Sbjct: 360  GPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRP 419

Query: 1455 IACCNVVYKVITKILASKLESVVPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRIS 1634
            I+CCNV+YKVI+KI+A++L+ V+PK I   QSAF+  R + +N+ LA EI+++Y +  +S
Sbjct: 420  ISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVS 479

Query: 1635 PRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSTASYSICINGSLQGKFP 1814
             RCA+K+D+ KA+D++ W FL  VL  + FPP F  W+  C++TAS+S+ +NG L G F 
Sbjct: 480  SRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFS 539

Query: 1815 GKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFS 1994
              R LRQG  +SP LF++ M+ LS++L        F YHP+C  + +THL+FADDLM+ S
Sbjct: 540  SARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILS 599

Query: 1995 RGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIVGDKLDNILNLLNFPLGTLPVRY 2174
             G + S+  ++  L +F   SGL ++  KS ++ AG+       I+   +F +G LPVRY
Sbjct: 600  DGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRY 659

Query: 2175 LGVPLAAQKLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPL 2354
            LG+PL +++L  +   PL +++   I  WT+  LS+AGRL LI S L  +  FW+  F L
Sbjct: 660  LGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRL 719

Query: 2355 PSTVIDRINRLCRVFLW-----GKNTSPIKWSKVCLPFDEGGLGLRDVHSWNKALLAKIL 2519
            P   I  I++LC  FLW       N + + W  +C P  E         +W+K      +
Sbjct: 720  PRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE---------AWHKG-----V 765

Query: 2520 WNIHSKADSLWVRW--VHSFYLKNQSIWTWDPKKSDSCLL 2633
            W  H      +  W  + +     Q +  W+ + S  C+L
Sbjct: 766  WFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVL 805



 Score = 71.6 bits (174), Expect = 3e-09
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
 Frame = +3

Query: 2775 KTFWHSAVWKNFIPPKYSFCVWLAFNDRLATINNLKYLDVDPT--CKLCGNYLENASHLF 2948
            K  WH  VW     PK+SFCVWLA  ++L+T   +++ ++  +  C LC N LE   HLF
Sbjct: 758  KEAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLF 817

Query: 2949 FDCIVTRLLWDRVKKWL---KFSHSMSTIAGALKWTKKEHGAPALKKARAVAVCCTIYQI 3119
            F C  T  +W+ + K L    ++    TI   +  + + H   +   AR+V +  ++Y I
Sbjct: 818  FSCAYTSGIWEALAKNLLQRSYTTDWQTIISYV--SGQCHDRVSCFLARSV-LQASVYTI 874

Query: 3120 WKARN 3134
            W+ RN
Sbjct: 875  WRERN 879


>gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]
          Length = 2215

 Score =  466 bits (1198), Expect = e-128
 Identities = 284/861 (32%), Positives = 446/861 (51%), Gaps = 9/861 (1%)
 Frame = +3

Query: 96   LIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSFIYGLNTVGERRCLWN 275
            ++ N + + L++S     +VL   PQ +H  +T       I T+F+Y   T  ER  LWN
Sbjct: 906  IVNNSQKIWLFHSVEFICEVLLDHPQCLHVRVTIPWLDLPIFTTFVYAKCTRSERTPLWN 965

Query: 276  KMLELGDLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCY 455
             +  L   ++ PW++ GDFN I   +E+L G      S+E+F       GL +    G  
Sbjct: 966  CLRNLAADMEGPWIVGGDFNIILKREERLYGADPHEGSIEDFASVLLDCGLLDGGFEGNP 1025

Query: 456  FTWTNNTIWCRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFK 635
            FTWTNN ++ RLDR + N  W N  +  +    +  + SDH P+++S    +      F+
Sbjct: 1026 FTWTNNRMFQRLDRMVYNQQWINK-FPITRIQHLNRDGSDHCPLLLSCSNSSEKAPSSFR 1084

Query: 636  FFNMWALHPDFLNTVQTAWNLNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQV 815
            F + WALH +F  +V+  WNL   G        K K LK  LK  N   F  I S +K+ 
Sbjct: 1085 FLHAWALHHNFNASVEGNWNLPINGSGLMAFWSKQKRLKQHLKWWNKTVFGDIFSNIKEA 1144

Query: 816  KTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKF 995
            +  ++  +I LH           + +  A+       E  F  QK+   ++   +RNTKF
Sbjct: 1145 EKRVEECEI-LHQQEQTIGSRIQLNKSYAQLNKQLSMEEIFWKQKSGVKWVVEGERNTKF 1203

Query: 996  FHSIIKRNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGTSFQTSPVDLQTLQSG 1175
            FH  +++  +R  +  +  +DG+     + L ++ +++F +L     +    D    QS 
Sbjct: 1204 FHMRMQKKRIRSHIFKIQEQDGNWIEDPEQLQQSAIDFFSSLL----KAESCDDTRFQSS 1259

Query: 1176 PC---IDEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAA 1346
             C   I + D   L +  T Q +K A+F I+ E + GPDGFSS F+++ WD++ +D+  A
Sbjct: 1260 LCPSIISDTDNGFLCAEPTLQEVKEAVFGIDPESAAGPDGFSSHFYQQCWDIIAHDLFEA 1319

Query: 1347 VSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVP 1526
            V EFF  + I + +  T + LIPKT  +   ++FRPI+ C V+ K+ITKILA++L  ++P
Sbjct: 1320 VKEFFHGADIPQGMTSTTLVLIPKTTSASKWSEFRPISLCTVMNKIITKILANRLAKILP 1379

Query: 1527 KLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQV 1706
             +I   QS F+ GR I+DNI LAQE+I    +       A+K+D+ KAYD + WSFL +V
Sbjct: 1380 SIITENQSGFVGGRLISDNILLAQELIGKLDQKNRGGNVALKLDMMKAYDRLDWSFLFKV 1439

Query: 1707 LNGLGFPPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLS 1886
            L  LGF   +I  + +C+S   +S+ +NG   G F  +RGLRQGD +SP LF+L  EYL+
Sbjct: 1440 LQHLGFNAQWIGMIQKCISNCWFSLLLNGRTVGYFKSERGLRQGDSISPQLFILAAEYLA 1499

Query: 1887 RLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLD 2066
            R L    +     ++    +L ++HLAFADD+++F+ G   +++ ++  L +++  SG  
Sbjct: 1500 RGLNALYDQYPSLHYSSGCSLSVSHLAFADDVIIFANGSKSALQKIMAFLQEYEKLSGQR 1559

Query: 2067 VNSFKSNLFT-AGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIA 2243
            +N  KS + T   +   +   IL    F    LP+ YLG PL      V  +  L  +I 
Sbjct: 1560 INPQKSCVVTHTNMASSRRQIILQATGFSHRPLPITYLGAPLYKGHKKVMLFNDLVAKIE 1619

Query: 2244 SYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLWGKNTSP 2423
              I  W   +LS  GR+ L++S L  +  + LQ+   P  V++RINRL   FLWG +T+ 
Sbjct: 1620 ERITGWENKTLSPGGRITLLRSTLSSLPIYLLQVLKPPVIVLERINRLLNNFLWGGSTAS 1679

Query: 2424 -----IKWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQ 2588
                   W K+ LP  EGGL +R+V    +A   K+ W   +  +SLW +++ + Y   Q
Sbjct: 1680 KRIHWASWGKIALPIAEGGLDIRNVEDVCEAFSMKLWWRFRT-TNSLWTQFMRAKYCGGQ 1738

Query: 2589 SIWTWDPKKSDSCLLKRICDI 2651
                  PK  DS   KR+  I
Sbjct: 1739 LPTDVQPKLHDSQTWKRMVTI 1759


>gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]
          Length = 2251

 Score =  456 bits (1174), Expect = e-125
 Identities = 277/858 (32%), Positives = 438/858 (51%), Gaps = 9/858 (1%)
 Frame = +3

Query: 96   LIKNGRILILWNSSTVDLQVLDTDPQLIHCCLTCKISQNSILTSFIYGLNTVGERRCLWN 275
            ++ + + + L++S  +   ++   PQ +H  LT    +     +F+Y   T  ER  LW+
Sbjct: 943  IVNSSQKIWLFHSLELHSDIILDHPQCLHVRLTSPWLEKPFFATFVYAKCTRSERTLLWD 1002

Query: 276  KMLELGDLIDSPWLLLGDFNTIKNPDEKLNGEPFTSKSVEEFHDTCAYLGLSEVQSTGCY 455
             +  L    + PWL+ GDFN I   +E+L G      S+E+F       GL +    G  
Sbjct: 1003 CLRRLAADNEEPWLVGGDFNIILKREERLYGSAPHEGSMEDFASVLLDCGLLDGGFEGNP 1062

Query: 456  FTWTNNTIWCRLDRALINSAWSNSNWRCSADIPVPGNVSDHSPIVVSFFEQNLVLSKPFK 635
            FTWTNN ++ RLDR + N  W N  +  +    +  + SDH P+++S F  +      F+
Sbjct: 1063 FTWTNNRMFQRLDRVVYNHQWINM-FPITRIQHLNRDGSDHCPLLISCFISSEKSPSSFR 1121

Query: 636  FFNMWALHPDFLNTVQTAWNLNFWGKAQFILCKKLKALKPSLKELNNFHFSHISSRVKQV 815
            F + W LH DF  +V+  WNL   G        K   LK  LK  N   F  I S++K+ 
Sbjct: 1122 FQHAWVLHHDFKTSVEGNWNLPINGSGLQAFWIKQHRLKQHLKWWNKAVFGDIFSKLKEA 1181

Query: 816  KTALKNSQIQLHTDPLNSALCDSVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNTKF 995
            +  ++  +I LH          ++ +  A+       E  F  QK+   ++   +RNTKF
Sbjct: 1182 EKRVEECEI-LHQQEQTVGSRINLNKSYAQLNKQLNVEEIFWKQKSGVKWVVEGERNTKF 1240

Query: 996  FHSIIKRNSLRKQMNSVILEDGSKTSSFDDLSKAFVNYFKNLFGTSFQTSPVDLQTLQSG 1175
            FH  +++  +R  +  V   DG      + L ++ + YF +L     +  P D+   Q+ 
Sbjct: 1241 FHMRMQKKRIRSHIFKVQEPDGRWIEDQEQLKQSAIEYFSSLL----KAEPCDISRFQNS 1296

Query: 1176 ---PCIDEDDFNLLSSPITQQAIKIALFDIEDERSPGPDGFSSGFFKKSWDVVGNDVIAA 1346
                 I   +  LL +    Q +K A+FDI+ E + GPDGFSS F+++ W+ + +D++ A
Sbjct: 1297 LIPSIISNSENELLCAEPNLQEVKDAVFDIDPESAAGPDGFSSYFYQQCWNTIAHDLLDA 1356

Query: 1347 VSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVVP 1526
            V +FF  + I R +  T + L+PK   +   ++FRPI+ C V+ K+ITK+L+++L  ++P
Sbjct: 1357 VRDFFHGANIPRGVTSTTLVLLPKKSSASKWSEFRPISLCTVMNKIITKLLSNRLAKILP 1416

Query: 1527 KLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQV 1706
             +I   QS F+ GR I+DNI LAQE+IR           A+K+D+ KAYD + WSFL +V
Sbjct: 1417 SIITENQSGFVGGRLISDNILLAQELIRKLDTKSRGGNLALKLDMMKAYDRLDWSFLIKV 1476

Query: 1707 LNGLGFPPIFISWVMECVSTASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLS 1886
            L   GF   +I  + +C+S   +S+ +NG ++G F  +RGLRQGD +SP LF+L  EYLS
Sbjct: 1477 LQHFGFNEQWIGMIQKCISNCWFSLLLNGRIEGYFKSERGLRQGDSISPQLFILAAEYLS 1536

Query: 1887 RLLKVRTNTSTFKYHPRCETLKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLD 2066
            R L    +     ++     L ++HLAFADD+++F+ G   +++ ++  L +++  SG  
Sbjct: 1537 RGLNALYDQYPSLHYSSGVPLSVSHLAFADDVLIFTNGSKSALQRILVFLQEYEEISGQR 1596

Query: 2067 VNSFKSNLFT-AGIVGDKLDNILNLLNFPLGTLPVRYLGVPLAAQKLNVNHYAPLYDRIA 2243
            +N+ KS   T   I   +   I     F    LP+ YLG PL      V  +  L  +I 
Sbjct: 1597 INAQKSCFVTHTNIPNSRRQIIAQATGFNHQLLPITYLGAPLYKGHKKVILFNDLVAKIE 1656

Query: 2244 SYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPSTVIDRINRLCRVFLWG----- 2408
              I  W    LS  GR+ L++SVL  +  + LQ+   P  V++R+NRL   FLWG     
Sbjct: 1657 ERITGWENKILSPGGRITLLRSVLASLPIYLLQVLKPPVCVLERVNRLFNSFLWGGSAAS 1716

Query: 2409 KNTSPIKWSKVCLPFDEGGLGLRDVHSWNKALLAKILWNIHSKADSLWVRWVHSFYLKNQ 2588
            K      W+K+ LP  EGGL +R +    +A   K+ W   +  DSLW R++   Y + Q
Sbjct: 1717 KRIHWASWAKIALPVTEGGLDIRSLAEVFEAFSMKLWWRFRT-TDSLWTRFMRMKYCRGQ 1775

Query: 2589 SIWTWDPKKSDSCLLKRI 2642
                  PK  DS   KR+
Sbjct: 1776 LPMQTQPKLHDSQTWKRM 1793