BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000808
         (991 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   265   3e-68
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        259   9e-67
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   258   3e-66
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   257   4e-66
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     256   1e-65
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   255   2e-65
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   255   2e-65
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               255   2e-65
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                255   2e-65
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     254   3e-65
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   254   3e-65
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   251   3e-64
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   251   3e-64
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   251   4e-64
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   251   4e-64
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         249   9e-64
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           249   9e-64
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        249   1e-63
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   249   1e-63
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   248   3e-63

>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  265 bits (676), Expect = 3e-68
 Identities = 136/339 (40%), Positives = 201/339 (59%), Gaps = 17/339 (5%)
 Frame = +3

Query: 24   NDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX-- 197
            N ++++A ++ +     MV    D    V+     +W++D+ C+FHMTP ++ F      
Sbjct: 250  NGESSLAKSTEAFNPA-MVLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKEL 308

Query: 198  --------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGR 335
                          + GIG + ++   G  + L +VR++P++  NLIS   LED G   +
Sbjct: 309  SSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFK 368

Query: 336  WGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLGHMS 515
               G++KI+KG   I K +K+  LY+ +  +E E   H+S      D+T LWH RLGHMS
Sbjct: 369  SQDGILKIVKGCSTILKGQKRDTLYILDGVTE-EGESHSSAEV--KDETALWHSRLGHMS 425

Query: 516  AKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHADVW 695
             KG+EIL K GC  ++ +  + FC+ CV GKQ RV F     P Q +  + L Y+H+D+W
Sbjct: 426  QKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA----PAQHVTKEKLAYVHSDLW 481

Query: 696  GPASEPTQGGN-RYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTLR 872
            G    P   GN +YF+S +DD+SRKVW++ ++ K E FEKF  WK ++ENQ+ +++K LR
Sbjct: 482  GSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLR 541

Query: 873  TDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            TDNGLE+CN+ F+  C E GI RHKT  YTPQQNG+AER
Sbjct: 542  TDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAER 580


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  259 bits (663), Expect = 9e-67
 Identities = 136/341 (39%), Positives = 197/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 269  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 321

Query: 198  I----------------AGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
            +                AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 322  VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYK 381

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA  K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 382  YSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 441

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L K G      +S + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 442  HMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 497

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F  FK WK ++E QT +++K 
Sbjct: 498  DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 557

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 558  LRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER 598


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  258 bits (658), Expect = 3e-66
 Identities = 130/304 (42%), Positives = 184/304 (60%), Gaps = 17/304 (5%)
 Frame = +3

Query: 129  QWLIDSACTFHMTPFRNLFXXXX----------------IAGIGDVCLKFESGYALTLKN 260
            QW++D+ACT+HM P R+ F                    +AGIG V +K   G   TL +
Sbjct: 265  QWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSD 324

Query: 261  VRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHE 437
            VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   
Sbjct: 325  VRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILG 384

Query: 438  SYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSR 617
            +    S +   SD T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  R
Sbjct: 385  NVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKR 444

Query: 618  VKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKS 797
            VKF  S    +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K 
Sbjct: 445  VKFNTSTHTTE----GILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKY 500

Query: 798  EVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNG 977
            + F+ FK WK ++E QT +++K LRTDNG+EFC+ +F + C   GI RH T+P+TPQQNG
Sbjct: 501  QAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNG 560

Query: 978  VAER 989
            VAER
Sbjct: 561  VAER 564


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  257 bits (657), Expect = 4e-66
 Identities = 141/349 (40%), Positives = 199/349 (57%), Gaps = 20/349 (5%)
 Frame = +3

Query: 3    NFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFR 176
            N    +S+ +A++ +++    +GD  +V+  C         S  +W++D+AC+FH+   R
Sbjct: 254  NKEKRKSDGKASVVTSAKNSDSGDCLVVFAGC-------VASHDEWILDTACSFHIYINR 306

Query: 177  NLFXXXX-----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 305
            + F                     I GIG V +K   G   TLK+VRH+P +  NLIS +
Sbjct: 307  DWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLS 366

Query: 306  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKT 482
             L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V   + +KT
Sbjct: 367  TLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKT 426

Query: 483  DLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCS 662
            +LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +    
Sbjct: 427  NLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTK---- 482

Query: 663  DILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIEN 842
             IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FK WK++IE 
Sbjct: 483  GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIER 542

Query: 843  QTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            QT K +K LRTDN  EFC++ FD+ C + GI RH T+PYTPQQNGVAER
Sbjct: 543  QTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAER 591


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  256 bits (653), Expect = 1e-65
 Identities = 134/341 (39%), Positives = 197/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 178  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 230

Query: 198  ----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
                            +AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 231  AVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYK 290

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 291  YSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 350

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L K G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 351  HMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 406

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K 
Sbjct: 407  DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 466

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+E C+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 467  LRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER 507


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  255 bits (651), Expect = 2e-65
 Identities = 132/341 (38%), Positives = 197/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++++AC +HM P R+ F    
Sbjct: 476  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILNTACIYHMCPNRDWFATYE 528

Query: 198  ----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
                            +AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 529  AVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYK 588

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 589  YSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 648

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HM+  GL  L K G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 649  HMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 704

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K 
Sbjct: 705  DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 764

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 765  LRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER 805


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  255 bits (651), Expect = 2e-65
 Identities = 132/341 (38%), Positives = 197/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++++AC +HM P R+ F    
Sbjct: 269  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILNTACIYHMCPNRDWFATYE 321

Query: 198  ----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
                            +AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 322  AVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYK 381

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 382  YSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 441

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HM+  GL  L K G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 442  HMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 497

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K 
Sbjct: 498  DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 557

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 558  LRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER 598


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  255 bits (651), Expect = 2e-65
 Identities = 133/341 (39%), Positives = 196/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 86   EDEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 138

Query: 198  I----------------AGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
            +                AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 139  VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYK 198

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 199  YSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 258

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L   G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 259  HMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 314

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I++D+SRKVW + +K+K + F  FK WK ++E QT +++K 
Sbjct: 315  DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 374

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 375  LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAER 415


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  255 bits (651), Expect = 2e-65
 Identities = 133/341 (39%), Positives = 196/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 254  EDEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 306

Query: 198  I----------------AGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
            +                AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 307  VVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYK 366

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 367  YSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLG 426

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L   G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 427  HMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 482

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I++D+SRKVW + +K+K + F  FK WK ++E QT +++K 
Sbjct: 483  DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 542

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH TVP+TPQQNGVAER
Sbjct: 543  LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAER 583


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  254 bits (650), Expect = 3e-65
 Identities = 130/304 (42%), Positives = 182/304 (59%), Gaps = 17/304 (5%)
 Frame = +3

Query: 129  QWLIDSACTFHMTPFRNLFXXXX----------------IAGIGDVCLKFESGYALTLKN 260
            QW++D+A T+HM P R+ F                    +AGIG V +K   GY  TL +
Sbjct: 334  QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSD 393

Query: 261  VRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHE 437
            VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   
Sbjct: 394  VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILG 453

Query: 438  SYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSR 617
            +    S +   SD T+LWH RLGHMS  GL  L K        +  + FC+ C+ GK  R
Sbjct: 454  NVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKR 513

Query: 618  VKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKS 797
            VKF  S    +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K 
Sbjct: 514  VKFNTSTHTTE----GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKY 569

Query: 798  EVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNG 977
            + F+ FK WK ++E QT K++K LRTDNG+EFC+ +F + C   GI  H TVP+TPQQNG
Sbjct: 570  QAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNG 629

Query: 978  VAER 989
            VAER
Sbjct: 630  VAER 633


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  254 bits (650), Expect = 3e-65
 Identities = 130/304 (42%), Positives = 182/304 (59%), Gaps = 17/304 (5%)
 Frame = +3

Query: 129  QWLIDSACTFHMTPFRNLFXXXX----------------IAGIGDVCLKFESGYALTLKN 260
            QW++D+A T+HM P R+ F                    +AGIG V +K   GY  TL +
Sbjct: 334  QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSD 393

Query: 261  VRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHE 437
            VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   
Sbjct: 394  VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILG 453

Query: 438  SYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSR 617
            +    S +   SD T+LWH RLGHMS  GL  L K        +  + FC+ C+ GK  R
Sbjct: 454  NVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKR 513

Query: 618  VKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKS 797
            VKF  S    +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K 
Sbjct: 514  VKFNTSTHTTE----GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKY 569

Query: 798  EVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNG 977
            + F+ FK WK ++E QT K++K LRTDNG+EFC+ +F + C   GI  H TVP+TPQQNG
Sbjct: 570  QAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNG 629

Query: 978  VAER 989
            VAER
Sbjct: 630  VAER 633


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  251 bits (641), Expect = 3e-64
 Identities = 136/340 (40%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
 Frame = +3

Query: 33   ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX----- 197
            A+ A++   +GD  +V+  C            +W++DSAC+FH+   RN F         
Sbjct: 264  ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316

Query: 198  ------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 341
                        I GIG V +K + G   TLKNVR++P +  NLIS + L+ +G +    
Sbjct: 317  DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376

Query: 342  KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 509
             GV+K+ KG+LV  K +     LYV   C       +    +V + +  KT+LWH RLGH
Sbjct: 377  DGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNLWHMRLGH 434

Query: 510  MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 689
            MS  G+  L K         S + FC+ C+ GK  RV+F  S    +      L+Y+HAD
Sbjct: 435  MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490

Query: 690  VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 869
            +WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FKNWK++IE QT +++K L
Sbjct: 491  LWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550

Query: 870  RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAER
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAER 590


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  251 bits (641), Expect = 3e-64
 Identities = 140/349 (40%), Positives = 196/349 (56%), Gaps = 20/349 (5%)
 Frame = +3

Query: 3    NFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFR 176
            N    +S+ +A++ +++    +GD  +V+  C         S  +W++D+AC+FH+   R
Sbjct: 254  NKEKRKSDGKASVVTSAENSDSGDCLVVFAGC-------VASHDEWILDTACSFHICINR 306

Query: 177  NLFXXXX-----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 305
            + F                     I GIG V +K   G   TLK+VRH+P +  NLIS +
Sbjct: 307  DWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLS 366

Query: 306  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKT 482
             L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V+  +  KT
Sbjct: 367  TLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIKT 426

Query: 483  DLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCS 662
            +LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +    
Sbjct: 427  NLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTK---- 482

Query: 663  DILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIEN 842
             IL+Y+H D+WGP+ +   GG RY L+IIDD+SRKVW + +K+K + F  FK WK+ IE 
Sbjct: 483  GILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIER 542

Query: 843  QTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            QT K +K LRTDNG EFC++ FD+ C + GI RH T+PYTPQQNGVAER
Sbjct: 543  QTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAER 591


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  251 bits (640), Expect = 4e-64
 Identities = 135/340 (39%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
 Frame = +3

Query: 33   ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX----- 197
            A+ A++   +GD  +V+  C            +W++DSAC+FH+   RN F         
Sbjct: 264  ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316

Query: 198  ------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 341
                        I GIG V +K + G   TLKNVR++P +  NLIS + L+ +G +    
Sbjct: 317  DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376

Query: 342  KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 509
             GV+K+ KG+LV  K +     LYV   C       +    +V + +  KT+LWH RLGH
Sbjct: 377  DGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNLWHMRLGH 434

Query: 510  MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 689
            MS  G+  L K         S + FC+ C+ GK  RV+F  S    +      L+Y+HAD
Sbjct: 435  MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490

Query: 690  VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 869
            +WGP+ +P+ GG RY L++IDD+SRKVW + +K+K + F  FKNWK++IE QT +++K L
Sbjct: 491  LWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550

Query: 870  RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAER
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAER 590


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  251 bits (640), Expect = 4e-64
 Identities = 135/340 (39%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
 Frame = +3

Query: 33   ANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX----- 197
            A+ A++   +GD  +V+  C            +W++DSAC+FH+   RN F         
Sbjct: 264  ASAAASDDDSGDCLVVFAGC-------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKG 316

Query: 198  ------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWG 341
                        I GIG V +K + G   TLKNVR++P +  NLIS + L+ +G +    
Sbjct: 317  DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGS 376

Query: 342  KGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDLWHKRLGH 509
             GV+K+ KG+LV  K +     LYV   C       +    ++ + +  KT+LWH RLGH
Sbjct: 377  DGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAA--AITNDEPSKTNLWHMRLGH 434

Query: 510  MSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHAD 689
            MS  G+  L K         S + FC+ C+ GK  RV+F  S    +      L+Y+HAD
Sbjct: 435  MSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK----GTLDYVHAD 490

Query: 690  VWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTL 869
            +WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FKNWK++IE QT +++K L
Sbjct: 491  LWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLL 550

Query: 870  RTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            RTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAER
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAER 590


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  249 bits (637), Expect = 9e-64
 Identities = 133/341 (39%), Positives = 195/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 101  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 153

Query: 198  ----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
                            +AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 154  AVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYK 213

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 214  YSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 273

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L K G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 274  HMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 329

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K 
Sbjct: 330  DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH    YTPQQNGVAER
Sbjct: 390  LRTDNGMEFCSKIFKSYCKSEGIVRH----YTPQQNGVAER 426


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  249 bits (637), Expect = 9e-64
 Identities = 133/341 (39%), Positives = 195/341 (57%), Gaps = 17/341 (4%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R+ F    
Sbjct: 101  EEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYE 153

Query: 198  ----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 329
                            +AGIG V +K   G   TL +VRH+P+L  +LIS   L+  G +
Sbjct: 154  AVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYK 213

Query: 330  GRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 506
               G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+LWH RLG
Sbjct: 214  YSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLG 273

Query: 507  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 686
            HMS  GL  L K G      +  + FC+ C+ GK  RVKF  S    +     IL+Y+H+
Sbjct: 274  HMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE----GILDYVHS 329

Query: 687  DVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKT 866
            D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK WK ++E QT +++K 
Sbjct: 330  DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389

Query: 867  LRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            LRTDNG+EFC+ +F + C   GI RH    YTPQQNGVAER
Sbjct: 390  LRTDNGMEFCSKIFKSYCKSEGIVRH----YTPQQNGVAER 426


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  249 bits (636), Expect = 1e-63
 Identities = 137/342 (40%), Positives = 191/342 (55%), Gaps = 18/342 (5%)
 Frame = +3

Query: 18   QSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX 197
            + +  A +AS  GS G     Y   D +   +  +  QW+IDS C+FH+ P + LF    
Sbjct: 259  EKSGDAAVASDDGSDG-----YQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYE 313

Query: 198  IAGIGDV---------------CLKFESGYAL--TLKNVRHVPDLCNNLISCAALEDDGL 326
                G V               C +      L  +L  VRH P L  NLIS   L+  G 
Sbjct: 314  AVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGY 373

Query: 327  EGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSV-QSDKTDLWHKRL 503
              +   G +++ KG  ++ K   +  LYV    S     V   V++V + D+T LWH RL
Sbjct: 374  FFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVP---VQEGVSAVSEEDRTKLWHLRL 430

Query: 504  GHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLH 683
            GHMS KGL+ L K G  G D++  + FC++C+ GK  R KF       + M   +L+Y H
Sbjct: 431  GHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFN----KGEHMSKQVLDYAH 486

Query: 684  ADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIK 863
             D WGPA  P+  G RYF+S+IDD+SRKVW++++K K +  EKFK WK L+ENQ+  ++K
Sbjct: 487  IDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLK 546

Query: 864  TLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
             LRTDNGLEFC+ +F+  C + GI+RHKTV +TPQQNG+AER
Sbjct: 547  CLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAER 588


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  249 bits (636), Expect = 1e-63
 Identities = 136/349 (38%), Positives = 197/349 (56%), Gaps = 20/349 (5%)
 Frame = +3

Query: 3    NFNNYQSNDQANMASTSGST--GDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFR 176
            N    +S+ +A++ +++ ++  GD  +V+ +C         S  +W++D+ C+FH+   R
Sbjct: 149  NKEKRKSDGKASVVTSADNSDSGDCLVVFVVC-------VSSHDEWILDTTCSFHICINR 201

Query: 177  NLFXXXX-----------------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 305
            + F                     I GIG V +K   G   TLK+VRH+P +  NLIS +
Sbjct: 202  DWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLS 261

Query: 306  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKT 482
             L+ +G +     GV+K+ KG+LV    +    NLYV    + H       V+  +  KT
Sbjct: 262  TLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGYVTAAVVSKDEPSKT 321

Query: 483  DLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCS 662
            ++WH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +    
Sbjct: 322  NMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTK---- 377

Query: 663  DILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIEN 842
             IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FK WK++I+ 
Sbjct: 378  GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKR 437

Query: 843  QTGKRIKTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            QT K +K LRTDNG  FC++ FD+ C + GI  H T+PYTPQQNGVAER
Sbjct: 438  QTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAER 486


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  248 bits (633), Expect = 3e-63
 Identities = 136/331 (41%), Positives = 185/331 (55%), Gaps = 15/331 (4%)
 Frame = +3

Query: 42   ASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFXXXX-------- 197
            +S  G  GDV  V          +  S   W++D+  ++HM   R+LF            
Sbjct: 599  SSDEGEGGDVLTVS---------TSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVKL 649

Query: 198  -------IAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMK 356
                   + G G V +K   G   TL N  +VP L  NLIS   L+ +G       GV++
Sbjct: 650  GDDGELGVKGSGSVQIKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLR 708

Query: 357  ILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEIL 536
            + KG LV+ K   +  +Y     S     V  +    + + T+LWH+RLGHMS KGL IL
Sbjct: 709  VSKGALVVMKGRLQHGIYTLMGSS-----VLGTAAVEEDNCTELWHRRLGHMSEKGLSIL 763

Query: 537  HKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHADVWGPASEPT 716
             K G     +   + FC++CV+GKQ RVKF +         + +LEY+H+D+WGP+   +
Sbjct: 764  SKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTT----NGVLEYIHSDLWGPSPVES 819

Query: 717  QGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQTGKRIKTLRTDNGLEFC 896
              G RY+++ IDDFSRKVWV+ +K K EVF KFK WK ++E +TGK +KTLRTDNGLEFC
Sbjct: 820  HSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFC 879

Query: 897  NNLFDNLCAEFGIRRHKTVPYTPQQNGVAER 989
            N  FD  C + GI RH+TV +TPQQNGVAER
Sbjct: 880  NKDFDEFCRKEGIVRHRTVRHTPQQNGVAER 910