BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000552
         (8741 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  1984   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  1977   0.0  
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            1489   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  1484   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      1466   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      1465   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      1464   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1462   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   947   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   945   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   944   0.0  
gb|AFA43541.1| coat protein [Citrus leaf blotch virus]                707   0.0  
gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271...   704   0.0  
gb|AFA43545.1| coat protein [Citrus leaf blotch virus]                702   0.0  
gb|AFA43547.1| coat protein [Citrus leaf blotch virus]                702   0.0  
gb|AFA43544.1| coat protein [Citrus leaf blotch virus]                701   0.0  
gb|AFA43543.1| coat protein [Citrus leaf blotch virus]                701   0.0  
gb|AFA43546.1| coat protein [Citrus leaf blotch virus]                700   0.0  
gb|AFA43542.1| coat protein [Citrus leaf blotch virus]                699   0.0  
gb|AFA43551.1| coat protein [Citrus leaf blotch virus]                697   0.0  

>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1984 bits (5139), Expect = 0.0
 Identities = 1043/2016 (51%), Positives = 1332/2016 (66%), Gaps = 52/2016 (2%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 377
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 378  ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 542
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGGPELFSRNFIKSLEN 178

Query: 543  RKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 722
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 723  QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 902
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 903  DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 1082
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 1083 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 1262
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 1263 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 1442
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 1443 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 1598
            GYLER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 1599 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEGEMYTGAYIE 1745
                  ISN         A++    +D KK+  +      +N + FL  EG    G  +E
Sbjct: 538  FKVDPFISNSITEFTLLEALLGKR-IDPKKYSYSKQACTLSNYLTFLCAEG--LDGFNLE 594

Query: 1746 QKFDEFLHPDHYCSNSDLEKVEPERDDESGAKR--DKEAEFCNGEEDKIPHHNXXXXXXX 1919
            +  +  L    +   SD E+ E    +++G  +       F N   ++IP          
Sbjct: 595  EHLERRLKAAGH-DTSDDEEEELTSVEQTGPIKILADPLSFMNECLEEIPIETEPSLE-- 651

Query: 1920 XXXXXXXXQCSHGSEKDEHNQPLFDHXXXXXXXXXXXXXXXGSGRTTMHFNQIQYKDMFK 2099
                        G    +++   F+                           I Y D+F 
Sbjct: 652  ----------ERGQFSTDYHSEKFE---------------------------INYNDIFN 674

Query: 2100 RTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSH--LWEL 2273
               C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E +  S+  L E+
Sbjct: 675  PHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEM 733

Query: 2274 IAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCDGHHFMAYET 2441
            I  DG+FME ELIYLF + RG+ +++H      ++V+A   G  EGH+   G+HF+  ET
Sbjct: 734  IRPDGIFMEAELIYLFCVFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIET 793

Query: 2442 FALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGADYGHNGMMY 2621
            + ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV ADYGHNGM+Y
Sbjct: 794  YNVSTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVY 853

Query: 2622 PLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNC 2801
            P N W+PSLDEIIQ C     +N ALI +YE  ++LG HRDNE VY+D  ILTV   G  
Sbjct: 854  PHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEG 913

Query: 2802 IFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVRMMNGDKIEK 2981
             F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR +NG  I  
Sbjct: 914  TFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPI-- 971

Query: 2982 SISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAEC 3161
            +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S++DC    E 
Sbjct: 972  AIREENYKNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEA 1031

Query: 3162 LKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKG 3341
            L +++++++     ++  G   + +     HFS +     M R+  SHL  K NV+  +G
Sbjct: 1032 LDVTVDLNVSGKYVVLGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEG 1091

Query: 3342 LVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELS 3512
              E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG KYF     L 
Sbjct: 1092 FDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LK 1149

Query: 3513 NLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKD 3692
            +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW FKL L   +
Sbjct: 1150 DRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNE 1209

Query: 3693 SGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQAR 3872
              KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++LLFDPLQAR
Sbjct: 1210 QRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQAR 1269

Query: 3873 YHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKI 4046
            +H++ D  IL+F+HDVDR+V  + + Y+Y + R++  F R F  D+P  N+ +   + ++
Sbjct: 1270 HHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRL 1327

Query: 4047 WIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSE 4223
            WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF HVCI+LSE
Sbjct: 1328 WIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSE 1387

Query: 4224 STAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKM 4403
            S+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE +  +    M
Sbjct: 1388 SSAASNEFRWMVALTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLM 1447

Query: 4404 IRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQT 4583
            ++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E   + EP CQT
Sbjct: 1448 LKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQT 1506

Query: 4584 HLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSI 4763
            HLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T GP+RFK+I
Sbjct: 1507 HLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAI 1566

Query: 4764 YPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGL 4943
            YPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   L+F +DQGL
Sbjct: 1567 YPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGL 1626

Query: 4944 LERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQT 5123
            LE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQT
Sbjct: 1627 LEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQT 1686

Query: 5124 LACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDY 5303
            LACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDY
Sbjct: 1687 LACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDY 1746

Query: 5304 EAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLF 5483
            EAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLF
Sbjct: 1747 EAFDASQDEYILSFEIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLF 1806

Query: 5484 NTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPM 5663
            NTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKAKVERTE PM
Sbjct: 1807 NTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPM 1866

Query: 5664 FCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSER 5843
            FCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSER
Sbjct: 1867 FCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSER 1926

Query: 5844 QIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            Q+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1927 QVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1977 bits (5121), Expect = 0.0
 Identities = 1039/2000 (51%), Positives = 1322/2000 (66%), Gaps = 36/2000 (1%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 377
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 378  ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 542
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLDNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 543  RKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 722
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 723  QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 902
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 903  DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 1082
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 1083 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 1262
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 1263 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 1442
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE R DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADD 478

Query: 1443 GYLERVKLPFFN---YKGDPRKRETYHFLQQQLHRESPMRASGCKEKEPTLRICWISNDH 1613
            GYLER++LPF+N   Y    R+   Y+ L  +   E  +  S  K     L+I W    H
Sbjct: 479  GYLERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIE-SAQKGPNKMLQIEW----H 533

Query: 1614 RFVRFSRAVVNSNEVDDKKHFEAYTNLMAFLVKEGEMYTGAYIEQKFDEFLHPDHYCSNS 1793
                F      SN + +      +T L A L K  +    +Y +Q      +    C+  
Sbjct: 534  GIKEFKVDPFISNSITE------FTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEG 587

Query: 1794 DLEKVEPERDDESGAKRDKEAEFCNGEEDKIPHHNXXXXXXXXXXXXXXXQCSHGSEKDE 1973
             L+    E   E   K        + EE+                     +C    E   
Sbjct: 588  -LDGFNLEEHLERRLKAAGHDISDDEEEELTSAEQAGPIKILADPLGFMKECLE--EIPI 644

Query: 1974 HNQPLFDHXXXXXXXXXXXXXXXGSGRTTMHFN--QIQYKDMFKRTECTASHGGLIDVPA 2147
              +P  +                G   T  H    +I Y D+F    C  +HG  I  P+
Sbjct: 645  ETEPSLEER--------------GQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPS 690

Query: 2148 DGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSH--LWELIAKDGVFMEHELIYLF 2321
            DGNCFF A  +TFE VE    +RSDFS WL E +  S+  L E+I  DGVFME ELIYLF
Sbjct: 691  DGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLF 749

Query: 2322 AISRGLKIVVH----LNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFDLIDGIK 2489
             + RG+ +++H      ++V+A   G  EGH+   G+HF+  ET+ ++   S  L+  I 
Sbjct: 750  CVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIP 809

Query: 2490 GYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGADYGHNGMMYPLNQWIPSLDEIIQTC 2669
              +  ++ K+RF    F C  FRGRKAAF +KV ADYGHNGM+YP N W+PSLDEIIQ C
Sbjct: 810  CGFSEEITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 2670 DPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMS 2849
                 +N ALI +YE  ++LG HRDNE VY+D  ILTV   G   F +E + +   F M+
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMT 929

Query: 2850 DASFFIMPKGFQKKARHGVMATSERISITFRTHVRMMNGDKIEKSISLPKKKNKCLISAV 3029
              SFF+MPKGFQKKARH V     R+SITFR HVR +NG  I  +I     KN  LI A 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPI--AIREENYKNTRLIDAF 987

Query: 3030 SQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEVHMENDIKIM 3209
            S+A+K +++ +   L + N P+W  ++ +  G S++DC    E L +++++++     ++
Sbjct: 988  SKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVL 1047

Query: 3210 KFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN---MSHYNL 3380
              G   + +   + HFS +     M R+  SHL  K +++  +G  E +S     +  N 
Sbjct: 1048 GKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNK 1107

Query: 3381 LPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECISTQLHCLTGF 3560
            + F A+ E+ RIL  SFL  TTG+ LG+ LDNG KYF     L +  + I   +  + GF
Sbjct: 1108 IQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIGIDVTVVCGF 1165

Query: 3561 AGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERK 3740
            AGSGKS+ +Q WL   KK  FCVVSPR  LA+DW FKL L   +  KV TFE FIK ++ 
Sbjct: 1166 AGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKS 1225

Query: 3741 NLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDV 3920
             L+LIV+DE+TLFPNGY+D LVY+L   N   +++LLFDPLQARYH++ D  IL+F+HDV
Sbjct: 1226 KLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDV 1285

Query: 3921 DRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPEDIRGGFGER 4094
            DR+V  + + Y+Y + R++  F R F  D+P  N+ +   + ++WI      I     +R
Sbjct: 1286 DRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4095 LQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTR 4271
             +P DV+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4272 AKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGST 4451
            ++ R S   + LGG+++F +  K +L   IL GE +  +    M++  LI ++    G  
Sbjct: 1404 SRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKE-NGCR 1462

Query: 4452 DEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFD 4631
            DE+DREERLEGDPFLKP+IFLGQR+E  E E E   + EP CQTHLYI+EPNF   YNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4632 LIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAV 4811
             IR KE+REYREDMLVT+QFCDSY+K        T GP+RFK+IYPKHS  DDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582

Query: 4812 KKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKS 4991
            +KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   L+F +DQGLLE  +N FE KKL+KS
Sbjct: 1583 RKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642

Query: 4992 QATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWC 5171
              TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702

Query: 5172 RYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEI 5351
            RYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA QDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEV 1762

Query: 5352 HLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWR 5531
            HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWR
Sbjct: 1763 HLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822

Query: 5532 RGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPE 5711
            RGQPIAFAGDDMCALN+L + +DF+++F  ISLKAKVERTE PMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882

Query: 5712 LVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHI 5891
            L YNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942

Query: 5892 DKLKTKVKDLFQEQSSDEDI 5951
            DKLKTKV+DLF EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962


>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 1489 bits (3855), Expect = 0.0
 Identities = 756/1305 (57%), Positives = 937/1305 (71%), Gaps = 12/1305 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 2414
             S+  L E+I  +GVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G+HF+  ET+ ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSL+EIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVR 964

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             +NG  I  +I     KN CLI+A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKYVVLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 3315 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 3485
            K NV+  +G  E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGFDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 3486 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 3665
            YF     L +  + I T +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGTDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWA 1200

Query: 3666 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 3845
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 3846 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4025
            LLFDPLQARYH++ D  IL+F+HDVDR++  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4026 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4196
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTF 1378

Query: 4197 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4376
             HVCI+LSES+AASNE RW VA TRA+ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEK 1438

Query: 4377 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4556
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEV 1497

Query: 4557 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 4736
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 4737 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 4916
             GP+RFK+IYPKHS  DDMTFWMAV+KRL+FR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 4917 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 5096
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 5097 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 5276
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQ 1737

Query: 5277 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 5456
            RDICVESDYEAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 5457 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 5636
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 5637 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 5816
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 5817 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  528 bits (1359), Expect = e-146
 Identities = 273/591 (46%), Positives = 371/591 (62%), Gaps = 38/591 (6%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 377
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 378  ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 542
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 543  RKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 722
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 723  QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 902
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 903  DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 1082
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 1083 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 1262
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 1263 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 1442
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 1443 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 1598
            GYLER++LPF+N      KR+    Y+ L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 1599 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 1718
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FKVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
            gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
            leaf blotch virus]
          Length = 1962

 Score = 1484 bits (3841), Expect = 0.0
 Identities = 755/1305 (57%), Positives = 935/1305 (71%), Gaps = 12/1305 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 2414
             S+  L E+I  +GVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G+HF+  ET+ ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSL+EIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGRFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             +NG  I  +I     KN CLI+A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLE 1082

Query: 3315 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 3485
            K NV+  +G    +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGFDAMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 3486 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 3665
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWA 1200

Query: 3666 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 3845
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 3846 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4025
            LLFDPLQARYH++ D  IL+F+HDVDR++  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4026 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4196
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTF 1378

Query: 4197 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4376
             HVCI+LSES+AASNE RW VA TRA+ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEK 1438

Query: 4377 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4556
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEV 1497

Query: 4557 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 4736
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 4737 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 4916
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 4917 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 5096
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 5097 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 5276
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQ 1737

Query: 5277 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 5456
            RDICVESDYEAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 5457 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 5636
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 5637 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 5816
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 5817 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  528 bits (1359), Expect = e-146
 Identities = 273/591 (46%), Positives = 371/591 (62%), Gaps = 38/591 (6%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 377
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 378  ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 542
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 543  RKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 722
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 723  QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 902
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 903  DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 1082
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 1083 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 1262
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 1263 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 1442
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 1443 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 1598
            GYLER++LPF+N      KR+    Y+ L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 1599 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 1718
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FKVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1466 bits (3796), Expect = 0.0
 Identities = 753/1304 (57%), Positives = 928/1304 (71%), Gaps = 11/1304 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 2414
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 3315 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 3488
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 3489 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 3668
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 3669 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 3848
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 3849 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4028
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4029 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4199
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4200 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4379
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4380 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4559
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4560 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 4739
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 4740 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 4919
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 4920 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 5099
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 5100 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 5279
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQK 1763

Query: 5280 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 5459
            DICVESDYEAFDACQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDACQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 5460 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 5639
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 5640 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 5819
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 5820 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  525 bits (1353), Expect = e-145
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 392
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 393  -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 539
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFINRLVASKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 540  KRKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 719
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 720  DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 899
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 900  EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 1079
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 1080 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 1259
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 1260 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 1439
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 1440 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 1598
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1465 bits (3792), Expect = 0.0
 Identities = 752/1304 (57%), Positives = 927/1304 (71%), Gaps = 11/1304 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 2414
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 3315 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 3488
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 3489 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 3668
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 3669 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 3848
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 3849 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4028
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4029 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4199
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4200 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4379
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4380 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4559
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4560 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 4739
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 4740 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 4919
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 4920 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 5099
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 5100 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 5279
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQK 1763

Query: 5280 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 5459
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 5460 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 5639
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 5640 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 5819
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 5820 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-145
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 392
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 393  -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 539
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 540  KRKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 719
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 720  DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 899
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 900  EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 1079
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 1080 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 1259
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 1260 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 1439
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 1440 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 1598
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1464 bits (3790), Expect = 0.0
 Identities = 752/1304 (57%), Positives = 927/1304 (71%), Gaps = 11/1304 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 2414
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 3315 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 3488
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 3489 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 3668
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 3669 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 3848
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 3849 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4028
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4029 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4199
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4200 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4379
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4380 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4559
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLGQR++    E     
Sbjct: 1465 TFERLNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIE 1523

Query: 4560 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 4739
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 4740 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 4919
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 4920 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 5099
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 5100 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 5279
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL  WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQK 1763

Query: 5280 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 5459
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 5460 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 5639
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 5640 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 5819
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 5820 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-145
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 392
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 393  -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 539
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 540  KRKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 719
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 720  DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 899
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 900  EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 1079
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 1080 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 1259
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 1260 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 1439
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 1440 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 1598
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1462 bits (3784), Expect = 0.0
 Identities = 751/1304 (57%), Positives = 926/1304 (71%), Gaps = 11/1304 (0%)
 Frame = +3

Query: 2073 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 2252
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 2253 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 2414
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 2415 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYRFIQSDFVCHSFRGRKAAFFSKVGA 2594
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 2595 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 2774
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 2775 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 2954
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 2955 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 3134
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 3135 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 3314
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 3315 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 3488
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 3489 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 3668
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 3669 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 3848
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 3849 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4028
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4029 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4199
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4200 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4379
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4380 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4559
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4560 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 4739
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 4740 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 4919
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 4920 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 5099
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 5100 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 5279
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL  WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQK 1763

Query: 5280 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 5459
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 5460 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 5639
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 5640 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 5819
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 5820 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 5951
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-145
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 239
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 240  VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 392
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 393  -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 539
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 540  KRKSFFFHDEVHHWSXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 719
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 720  DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 899
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 900  EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 1079
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 1080 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 1259
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 1260 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 1439
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 1440 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 1598
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  947 bits (2447), Expect = 0.0
 Identities = 464/615 (75%), Positives = 520/615 (84%)
 Frame = +3

Query: 4107 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4286
            V+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4287 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4466
            SF  + LGG+DDF I    +L   IL GE +       M++  LI K     G +DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4467 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4646
            EERLEGDPFLKP+IFLGQR+   + + E   +EEPRCQTHLYI+EPNF   YNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4647 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 4826
            E+REYREDMLVT+QFCDSY+K        T GPMRFK+IYPKHS  DDMTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 4827 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 5006
            FR E+EN +RL+ AHL+GGL+YR+FK    L+F +DQGLLE  +N FE KKL+KS+ TI+
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIK 299

Query: 5007 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 5186
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 5187 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5366
            QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDI VESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 5367 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 5546
            A  P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 5547 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5726
            AFAGDDMCALN+LP+ + F+++F  +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 5727 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5906
            FQVAIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 5907 KVKDLFQEQSSDEDI 5951
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  945 bits (2443), Expect = 0.0
 Identities = 464/615 (75%), Positives = 519/615 (84%)
 Frame = +3

Query: 4107 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4286
            V+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4287 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4466
            SF  + LGG+DDF I    +L   IL GE +       M++  LI K     G +DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4467 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4646
            EERLEGDPFLKP+IFLGQR+   + + E   +EEPRCQTHLYI+EPNF   YNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4647 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 4826
            E+REYREDMLVT+QFCDSY+K        T GPMRFK+IYPKHS  DDMTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 4827 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 5006
            FR E+EN +RL+ AHL+GGL+YR+FK    L+F +DQGLLE  +N FE KKL+KS+ TIR
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIR 299

Query: 5007 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 5186
            SHSIRSD+DWALNDVFLFMKSQL TK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 5187 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5366
            QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 5367 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 5546
            A  P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 5547 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5726
            AFAGDDMCALN+LP+ + F+++F  +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 5727 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5906
            FQVAIEEGKVMECLENYAIEVSYAY+LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 5907 KVKDLFQEQSSDEDI 5951
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus] gi|571026291|emb|CDF66416.2|
            replication-associated polyprotein [Apricot vein clearing
            associated virus]
          Length = 1679

 Score =  944 bits (2440), Expect = 0.0
 Identities = 527/1187 (44%), Positives = 713/1187 (60%), Gaps = 55/1187 (4%)
 Frame = +3

Query: 2550 SFRGRKAAFFSKVGA-DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGAT 2726
            SFRGR + FF++    DYGHNG  Y    W   LD+ I +   D  +N+ L+Q Y+ G+ 
Sbjct: 510  SFRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIPS---DLIFNACLVQVYDKGSK 566

Query: 2727 LGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGV 2906
            +G H+DNE  Y+   ILTVN  G  +F  +  +    F ++D    ++   + +K RH V
Sbjct: 567  IGFHKDNEQCYAGYPILTVNF-GLALFEFDSGEA---FNLTDGDTILLSGDYLRKKRHRV 622

Query: 2907 MATSE-RISITFRTHVRMMNGDKIEKSISLPKK-KNKCLISAVSQALKSTEEKVCQALIS 3080
             + S+ RIS+TFR HV  MN   +E   +  K  KNKC+I AV+ AL  T   V   ++ 
Sbjct: 623  TSLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIV- 681

Query: 3081 ANKPYWLNFIRDDTGASLDDCNELAECLKISLEVHMENDIKIMKFG-DTLVRIKYS--SG 3251
            A +P  L  + DD          +   + +   +  E++ + M+   + L++  +S    
Sbjct: 682  AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDE 741

Query: 3252 HFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISNMSHYNLLPFNASGEYLRILRKSF 3431
            H   L +  N        +    +++ +           +  ++ + A  E    L  SF
Sbjct: 742  HMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSF 801

Query: 3432 LQRTTGVILGEVLDNGAKYFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVK 3611
            L  TTG +L E++  G+++F     ++  +     +L  + GFAGSGKS  + + + ++ 
Sbjct: 802  LAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRIS 861

Query: 3612 KT-----------------------------PFCVVSPRNVLASDWVFKLGLNAKDSGKV 3704
            +                                C++SPR  LA DW  KLG +A +   V
Sbjct: 862  REIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSV 921

Query: 3705 CTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSE 3884
             TFE   K     ++LIV+DE+TLFPNGYID L++ ++  +   +++L+FDPLQARY S 
Sbjct: 922  TTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYDSA 981

Query: 3885 SDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGETDSKIWIVTCP 4064
             D  IL  +HDVD ++ D EV+Y+Y S R           DL    + E D+        
Sbjct: 982  QDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDL---KKNEVDA-------- 1030

Query: 4065 EDIRGGFGERLQP--------------------DVILVDSQVEKKMYESQFRTLTFGESQ 4184
            E    G G + +P                    DV+LV S  E  ++ S  +T+TFGESQ
Sbjct: 1031 ESRETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQ 1090

Query: 4185 GLTFGHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKIL 4364
            GLT  H  I+LSE++A S++ RW VA TRA+++V+FL  HL GL+ FL   +  L   ++
Sbjct: 1091 GLTVDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVI 1150

Query: 4365 NGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIE 4544
            N   +       M+R+KL +         DE+DRE+RLEGD FLK  IFLGQR E+ E E
Sbjct: 1151 NKGLVTKKRLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPE 1210

Query: 4545 PETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKC 4724
                 + +   +TH ++ + NFAQ YNFD IR KE RE+R    VT+QF D+Y       
Sbjct: 1211 IVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQ 1270

Query: 4725 NDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFK 4904
               T GP+RF++IYP+H   DD+TF MAV KRL F +E + R +L  AH  G +++ +  
Sbjct: 1271 KKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLI 1330

Query: 4905 RTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTK 5084
            +   L F +D  L E CVNDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK
Sbjct: 1331 QKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTK 1390

Query: 5085 FEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVK 5264
            +EKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E Q+R+QLP EIYIHSNKNF+DLN WVK
Sbjct: 1391 YEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVK 1450

Query: 5265 KFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFA 5444
            K    D+CVESDYEAFDA QD+YILSFE+ +M+   +P+ +I AYIDLK  L CKLGHFA
Sbjct: 1451 KHAGDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFA 1510

Query: 5445 VMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKI 5624
            +MRFTGEF TFLFNTLANMAFTMCRYEW  G PIAFAGDDMCAL +L +   F  VF KI
Sbjct: 1511 IMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKI 1570

Query: 5625 SLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYN 5804
            SLKAK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAY+
Sbjct: 1571 SLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYS 1630

Query: 5805 LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDE 5945
            L ERL+++LK E Q++YHQAVVRFIV H+  L+TKVKDLF EQS+++
Sbjct: 1631 LGERLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  274 bits (701), Expect = 5e-70
 Identities = 161/417 (38%), Positives = 227/417 (54%), Gaps = 7/417 (1%)
 Frame = +3

Query: 60   MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSS-- 233
            MALL     +  +LG+F +  ++ IYN   E        R   F    +   KK  S   
Sbjct: 1    MALLYRTPQVN-LLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59

Query: 234  -IGVELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIVARQNLS 410
             +GV L P  YL HSHPFSK LENH+L  VLP  I    ++F SIK  K+  +  +   S
Sbjct: 60   WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKS 118

Query: 411  LL---NEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHW 581
            +L   N ++  +D  RY +VD   +   + + +      + F    K ++   HDEVHHW
Sbjct: 119  VLKTINRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFVRAVKGRNVMIHDEVHHW 177

Query: 582  SXXXXXXXXXXXEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSE 758
            +            P R VFSVVYP ELL G   SQNPKMY F+  + D++ FFPDG  SE
Sbjct: 178  TLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGRASE 237

Query: 759  GYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVD 938
            GY+Q ANL WLF   +       WT+ R  S ++HHLFE+VPG   ++++ F+NDF+ +D
Sbjct: 238  GYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETID 297

Query: 939  MHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFF 1118
            +  IFK+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+  +FF
Sbjct: 298  LQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFF 357

Query: 1119 EQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLG 1289
              L  R +     F +F  S+      KF+   PD  +    TWK  N   F+  LG
Sbjct: 358  RSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGN---FIKKLG 411


>gb|AFA43541.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  707 bits (1825), Expect = 0.0
 Identities = 347/363 (95%), Positives = 362/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            IEM
Sbjct: 361  IEM 363


>gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271897|gb|AFA43540.1|
            coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  704 bits (1817), Expect = 0.0
 Identities = 346/363 (95%), Positives = 361/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            IEM
Sbjct: 361  IEM 363


>gb|AFA43545.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  702 bits (1812), Expect = 0.0
 Identities = 344/363 (94%), Positives = 361/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHL+RVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLRRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43547.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  702 bits (1811), Expect = 0.0
 Identities = 343/363 (94%), Positives = 360/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK++EELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKIEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGK HMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKGHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSV LIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVGLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43544.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  701 bits (1809), Expect = 0.0
 Identities = 344/363 (94%), Positives = 360/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSD +RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDVERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDK PYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKGPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43543.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  701 bits (1809), Expect = 0.0
 Identities = 344/363 (94%), Positives = 360/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQ YIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQLYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43546.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  700 bits (1807), Expect = 0.0
 Identities = 344/363 (94%), Positives = 360/363 (99%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHM KDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMGKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEAD SVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADVSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43542.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  699 bits (1805), Expect = 0.0
 Identities = 343/363 (94%), Positives = 359/363 (98%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGS SSEPAH EPAHTPQLHVVND QQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSVSSEPAHNEPAHTPQLHVVNDFQQFYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRS SDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSASDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363


>gb|AFA43551.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  697 bits (1799), Expect = 0.0
 Identities = 343/363 (94%), Positives = 358/363 (98%)
 Frame = +2

Query: 7106 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 7285
            MKITN+NATTI+YWLA+VEPFLTSDE+RNS D+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSGDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7286 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 7465
            ILATKYGRVYSK+VEE NESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEESNESLKAAILAGAEAEDLVNKLKDISQRYASQIEITADRELQLE 120

Query: 7466 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 7645
            NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQ YIPFNEYPSLTQSIGTSDVAN
Sbjct: 121  NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQLYIPFNEYPSLTQSIGTSDVAN 180

Query: 7646 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 7825
            DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181  DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240

Query: 7826 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 8005
            IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241  IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300

Query: 8006 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 8185
            TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYNRGSSYESKNKA+L
Sbjct: 301  TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNRGSSYESKNKAKL 360

Query: 8186 IEM 8194
            +EM
Sbjct: 361  LEM 363