BLASTX nr result
ID: Rehmannia24_contig00000342
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00000342
(705 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670... 174 2e-41
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 174 3e-41
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 157 2e-36
ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein A... 157 3e-36
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 155 9e-36
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 150 4e-34
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 147 3e-33
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 146 7e-33
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 143 5e-32
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 137 3e-30
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 133 6e-29
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 130 4e-28
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 128 2e-27
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 124 2e-26
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 124 3e-26
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 123 7e-26
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 123 7e-26
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 123 7e-26
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 122 1e-25
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 121 2e-25
>ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670237 [Glycine max]
Length = 383
Score = 174 bits (441), Expect = 2e-41
Identities = 93/226 (41%), Positives = 131/226 (57%), Gaps = 9/226 (3%)
Frame = -1
Query: 654 KWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRAFLWNK----KRHP 487
+W+ SLSYAG++ LI++V+QGI FW+ IFPLP+SV+ I CR FLW K K P
Sbjct: 110 RWSRKSLSYAGKVELIRAVIQGIANFWMSIFPLPQSVLDTIIATCRNFLWGKADGGKIKP 169
Query: 486 -IAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRWVHGFYLRNQSIWT 310
+AW +VC P +EGGLG+ ++ WN ALLS ILW H ++LWVR VH +Y + ++W
Sbjct: 170 LVAWSEVCTPKKEGGLGLFNLKDWNIALLSCILWDLHSKKDSLWVRLVHHYYFKGGNVWD 229
Query: 309 WNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLN----SSKMYDIFRNE 142
+ DS + IRD +I S++ I+ ++N G N + KMYD R
Sbjct: 230 FISSSSDSVFI----HIRDIII----SKEENIEVAKLMLNSWGCNEQTLAGKMYDYIRGT 281
Query: 141 GPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNLSYIDTDPMC 4
P W + IW IP K SF WLA K+RL LD ++++ +C
Sbjct: 282 RPVVHWSSIIWNPVIPSKMSFILWLATKNRLLALDRAAFLNKGFLC 327
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 174 bits (440), Expect = 3e-41
Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 5/228 (2%)
Frame = -1
Query: 699 VHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLC 520
+HY+PL D+I I WTA LSYAGRL L+ SV+ + +WL FP PKSV+++I +C
Sbjct: 155 IHYSPLIDKIVGKIKHWTARLLSYAGRLQLVNSVMFALTNYWLNCFPFPKSVLQKIEAIC 214
Query: 519 RAFLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWV 355
R FLW ++ P+AW +C P GGL I D+ WNKA L K+LW ++LWV
Sbjct: 215 RIFLWTGGFEGSRKSPVAWKQICSPRSCGGLNIIDIDIWNKANLMKLLWNLSSKEDSLWV 274
Query: 354 RWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLN 175
+W+ +Y++ + + DS ++K I + R++L ID + L+ +N
Sbjct: 275 KWIQAYYVKRSELMHIEMKNTDSWIMKAILKQREDL--------EKIDNMEELMIRGSIN 326
Query: 174 SSKMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNL 31
K+Y ++ G R W N ++ P+ +F WLAC RLST D L
Sbjct: 327 MGKLYRKLQDCGQRKEWKNLLYGNTARPRANFILWLACHGRLSTKDRL 374
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 157 bits (398), Expect = 2e-36
Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 5/191 (2%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N HYAPL +I I W+ SLSYAG+L LI++V+QGI FW+ IFPLP+SV+ RI
Sbjct: 105 NVCHYAPLLSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWIGIFPLPQSVLDRINA 164
Query: 525 LCRAFLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
CR FLW KK+ +AW VC P EGGLG+ ++ WN ALLS ILW FH ++L
Sbjct: 165 SCRNFLWGKADIGKKKPLVAWSVVCSPKREGGLGLFNLKDWNLALLSCILWDFHCKKDSL 224
Query: 360 WVRWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNG 181
WVH +Y R +W +N S L+K+I +IRD +I K S + A + +
Sbjct: 225 ---WVHHYYFRRSDVWNYNTSSSYSVLIKKIIQIRDFIISKELSTEEAKKRIQSWRTNGQ 281
Query: 180 LNSSKMYDIFR 148
L K+Y+ R
Sbjct: 282 LLVGKVYEYIR 292
>ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 316
Score = 157 bits (397), Expect = 3e-36
Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 5/161 (3%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N HYAPL +I I W SLSY G+L LIK+V+QGI FW++IFPLP+SV+ RI
Sbjct: 138 NVCHYAPLLYKIVGLIQGWNKKSLSYVGKLELIKAVIQGIMNFWMRIFPLPQSVLDRINA 197
Query: 525 LCRAFLWNK----KRHP-IAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
C FLW+K K P +AW VC P +EGGLG+ ++ WN ALLS ILW FH ++L
Sbjct: 198 SCCNFLWSKADIGKNKPLVAWPVVCSPKQEGGLGLFNLKDWNLALLSHILWDFHCKKDSL 257
Query: 360 WVRWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQK 238
VRWVH +Y R W +N +S L+K+I +IRD +I K
Sbjct: 258 RVRWVHHYYFRRSDEWNYNISSSNSVLIKKIIQIRDFIISK 298
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 155 bits (393), Expect = 9e-36
Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 5/230 (2%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N HY L D+I I W+A LSYAGR+ LI+SV+ FW+Q PLPK VI RI
Sbjct: 595 NIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLIQSVIFATINFWMQCLPLPKFVIMRINA 654
Query: 525 LCRAFLWN-----KKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
+CR+FLW ++ PIAW VC P GGL I ++ WNK + K+LW ++ L
Sbjct: 655 ICRSFLWIGNSNISRKSPIAWEKVCSPKINGGLNIINLAIWNKISILKLLWNVCNKSDNL 714
Query: 360 WVRWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNG 181
W++W+H +Y+R QSIW+ +K S ++ + ++R L+Q Q
Sbjct: 715 WIKWLHTYYIRGQSIWSMVLKKSHSWIMSSMMKLRPLLLQYQSRMQDV------------ 762
Query: 180 LNSSKMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNL 31
K+Y E + W + P+ FC W AC RL++ D L
Sbjct: 763 FKMKKIYLALFEESEKMSWRTLMCNNLARPRALFCLWQACHFRLASKDRL 812
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 150 bits (379), Expect = 4e-34
Identities = 83/226 (36%), Positives = 117/226 (51%), Gaps = 5/226 (2%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y+PL + I I WT LSYAGRL LI SVL I FWL F LP+ I+ I K+C A
Sbjct: 313 YSPLLEHIKKKIGTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSA 372
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N ++ + W DVC P +EGGLG+R + N+ K++W+ T +LWVRW
Sbjct: 373 FLWSGPDLNPRKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRW 432
Query: 348 VHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLNSS 169
+ + L++ + W+ + ++L R DE + KF ++ +
Sbjct: 433 IEQYLLKHDTFWSVQTTTNMDSVLWR--GRNDEYMPKFSTRDT----------------- 473
Query: 168 KMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNL 31
++ RN WH IW PKFSFC WLA ++RLST D +
Sbjct: 474 --WNQTRNTSTPVTWHMGIWFAHATPKFSFCAWLAVQNRLSTGDKM 517
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 147 bits (371), Expect = 3e-33
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 12/241 (4%)
Frame = -1
Query: 687 PLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRAFL 508
PL D+I W A+ LSYAGRL L+K++L ++ +W QIFPLPK +IK + CR FL
Sbjct: 776 PLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFL 835
Query: 507 W-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRWVH 343
W + P+AW + P GGL + ++ WNKA + K+LW + LWVRWV+
Sbjct: 836 WTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVN 895
Query: 342 GFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLNSSKM 163
+Y++ Q+I + S +L++I E R EL+ + G ++ + N + K
Sbjct: 896 AYYIKRQNIENVTVSSNTSWILRKIFESR-ELLTRTGGWEA-------VSNHMNFSIKKT 947
Query: 162 YDIFRNEGPRHFWHNAIWKQFI-----PPKFSFCTWLACKDRLSTLDNLS--YIDTDPMC 4
Y + + + + N +WK+ I PK F WLA +RL+T + +S D P+C
Sbjct: 948 YKLLQED-----YENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLC 1002
Query: 3 K 1
K
Sbjct: 1003 K 1003
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 146 bits (368), Expect = 7e-33
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 5/225 (2%)
Frame = -1
Query: 687 PLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRAFL 508
PL + I W A LSYAGRL LIKS+L ++ +W IFPL K VI+ + K+CR FL
Sbjct: 773 PLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFL 832
Query: 507 WN-----KKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRWVH 343
W K+ P+AW + P GG + ++ WN+A + K+LW + LWVRW+H
Sbjct: 833 WTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIH 892
Query: 342 GFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLNSSKM 163
+Y++ Q I T N + +L++I + RD L S I + + + K
Sbjct: 893 SYYIKRQDILTVNISNQTTWILRKIVKARDHL--------SNIGDWDEICIGDKFSMKKA 944
Query: 162 YDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNLS 28
Y G R W I + PK F W+ +RL T+D +S
Sbjct: 945 YKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRIS 989
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 143 bits (361), Expect = 5e-32
Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 9/234 (3%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N +Y PL D+I I WT+ L+ GR+ ++ + I FW+Q P+P SVIK+I
Sbjct: 595 NIKYYLPLIDKITTRIRHWTSKLLNMTGRVQMVNCTITAIVQFWMQCLPIPMSVIKKIDS 654
Query: 525 LCRAFLWNK-----KRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
+CR+F+W++ ++ PIAW+ VC P +GGL I ++ WN + LW + + L
Sbjct: 655 MCRSFVWSRSTEITRKSPIAWNSVCRPKGQGGLNIFNLKVWNHITVLNCLWNLCKKVDNL 714
Query: 360 WVRWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTP----LV 193
WV+W+H Y++N S+ + S +LK + SQ+ I L P L+
Sbjct: 715 WVKWIHAHYIKNSSVMNTMVTNNFSWVLKNVL-----------SQREYIHTLQPVWDELL 763
Query: 192 NDNGLNSSKMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNL 31
N K YD E R W + K P+ TWLAC RL T D L
Sbjct: 764 NSERFKMKKAYDKMM-EADRVHWSGLMRKNCARPRAIHTTWLACHGRLGTKDRL 816
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 137 bits (345), Expect = 3e-30
Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N HYAPL +I I W+ SLSYAG+L LI++V+QGI FW++IFPL +SV+ RI
Sbjct: 105 NVCHYAPLLSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWMKIFPLSQSVLDRINA 164
Query: 525 LCRAFLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
C FLW K + IAW VC P +EGGLG+ ++ WN LLS+ILW FH + L
Sbjct: 165 SCCNFLWGKADIGKNKSLIAWSVVCSPKKEGGLGLFNLKDWNLTLLSRILWDFHCKKDFL 224
Query: 360 WVRWVHGFYLRNQSI 316
WVRWVH +Y R +
Sbjct: 225 WVRWVHHYYFRASDV 239
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 133 bits (334), Expect = 6e-29
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 20/240 (8%)
Frame = -1
Query: 687 PLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRAFL 508
PL ++I + I W LSYAGRL L+ SV+ + FW+ F LP++ I+ I ++ AFL
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFL 1102
Query: 507 W-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRWVH 343
W N + +AWHDVC P EGGLG+R + NK K++W+ +LWV W+
Sbjct: 1103 WSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQ 1162
Query: 342 GFYLRN----QSIWTWNPRKDD----------STLLKRICEIRD-ELIQKFGSQQSAIDA 208
+R S +DD L + IC +D L + G Q A
Sbjct: 1163 NNLIRTVAEALSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKA--- 1219
Query: 207 LTPLVNDNGLNSSKMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLSTLDNLS 28
S +++ R +G WH AIW PKF+F +WLA DRL+T D ++
Sbjct: 1220 --------KFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMA 1271
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 130 bits (327), Expect = 4e-28
Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 10/245 (4%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N HY PL ++I I W++ LS AGR+ L++S++ I +W+ +FP+PK VI++I
Sbjct: 256 NVHHYLPLVEKIVGKIRHWSSKLLSIAGRIQLVRSIITAIAQYWMSVFPMPKKVIQKIDS 315
Query: 525 LCRAFLWN-----KKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
+CR+F+W+ K++ +AW VC P GGL + ++ WN + K LW + L
Sbjct: 316 ICRSFIWSGSAEVKRKSLVAWKQVCKPARCGGLNLINLELWNVTAMLKCLWNICSKEDNL 375
Query: 360 WVRWVHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNG 181
WV+W+H ++L+ ++ + + + + +LK + + R ++ + ++
Sbjct: 376 WVKWIHAYFLKGDNVMSATIKSNSTWILKSVMKQRPQV-------NNLQLVWIEMLRKRK 428
Query: 180 LNSSKMYDIFRNEGPRHFWHNAIWKQFIPPKFSFCTWLACKDRLST---LDNLSYIDTD- 13
+ ++Y + + W + P+ + WLAC++RL+T L N++ I
Sbjct: 429 FSMKQVYMELVEDHNKIDWFRLLRYNRARPRANVTLWLACQNRLATKTRLKNMNMIQCSL 488
Query: 12 -PMCK 1
+CK
Sbjct: 489 CSLCK 493
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 128 bits (322), Expect = 2e-27
Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 5/136 (3%)
Frame = -1
Query: 705 NCVHYAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYK 526
N + + PL +++ A I+ WTA LSYAGR L+K+VL G++ W Q+F +P +IK I
Sbjct: 575 NTIQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEG 634
Query: 525 LCRAFLWN-----KKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETL 361
LCR++LW+ K+ IAW VC P EGGLG+ ++ WN++ ++K+ W + L
Sbjct: 635 LCRSYLWSGVGYVTKKALIAWDKVCSPKYEGGLGLINLKIWNRSAVTKLCWDLANKEDKL 694
Query: 360 WVRWVHGFYLRNQSIW 313
W++W+H +Y++ Q W
Sbjct: 695 WIKWIHAYYIKGQREW 710
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 124 bits (312), Expect = 2e-26
Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y+PL D++ + I WTA SLSYAGRL LI SV+ + FW+ + LP IK I KLC A
Sbjct: 359 YSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSA 418
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N K+ I W +C +EGGLGI+ + NK K++W+ +LWV W
Sbjct: 419 FLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNW 478
Query: 348 VHGFYLRNQSIWTWNPRKD-DSTLLKRICEIRD 253
V + +R S W+ N R S + K++ + RD
Sbjct: 479 VWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRD 511
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 124 bits (311), Expect = 3e-26
Identities = 63/153 (41%), Positives = 86/153 (56%), Gaps = 6/153 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y+PL D++ + I WTA SLSYAGRL LI SV+ + FW+ + LP IK I KLC A
Sbjct: 928 YSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSA 987
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N K+ I W +C +EGGLGI+ + NK K++W+ +LWV W
Sbjct: 988 FLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNW 1047
Query: 348 VHGFYLRNQSIWTWNPRKD-DSTLLKRICEIRD 253
V + +R S W+ N R S + K++ RD
Sbjct: 1048 VWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRD 1080
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 123 bits (308), Expect = 7e-26
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y PL +RI I WTA LS+AGRL LI SV+ + FW+ F LP + IK I LC A
Sbjct: 6 YIPLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCSA 65
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N+K+ ++W+DVC+P EEGGLG+R + NK K++W+ + +LWV+W
Sbjct: 66 FLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRL-LSSSSLWVQW 124
Query: 348 VHGFYLRNQSIWTWNPRKDDSTL 280
+ + +R S W+ +D STL
Sbjct: 125 LRQYVIRKGSFWS---LRDTSTL 144
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 123 bits (308), Expect = 7e-26
Identities = 60/133 (45%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y PL ++I I KWTA LS+AGRL LI SV+ + FW+ F LP + IK I +C +
Sbjct: 42 YGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSS 101
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N K+ +AW DVC P +EGGLGIR + NK L K++W+ T +LWV+W
Sbjct: 102 FLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQW 160
Query: 348 VHGFYLRNQSIWT 310
+ + LR S W+
Sbjct: 161 LRLYLLRKGSFWS 173
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 123 bits (308), Expect = 7e-26
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y+PL + + I WTA SLSYAGRL L+ SV+ I FW+ + LP I+ I KLC A
Sbjct: 1083 YSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSA 1142
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW N K+ IAW +C P +EGGLGI+ + NK K++W+ +LWV W
Sbjct: 1143 FLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTW 1202
Query: 348 VHGFYLRNQSIWTWNPRKD-DSTLLKRICEIRD 253
+ F +R + W+ N R S + K++ + R+
Sbjct: 1203 IWTFIIRKGTFWSANERSSLGSWMWKKLLKYRE 1235
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 122 bits (305), Expect = 1e-25
Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 6/191 (3%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y PL + I I W+A LSYAGRL LI SVL I FW+ F LP+ I+ I K+C A
Sbjct: 168 YLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCSA 227
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
+LW N + IAW DVC P +EGGLG+R + N K++W+ ++LWV+W
Sbjct: 228 YLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKW 287
Query: 348 VHGFYLRNQSIWTWNPRKD-DSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLNS 172
+H L+ S W S + K++ + RD IQ ++ + A T DN +
Sbjct: 288 IHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNN-GAHTFFWYDNWSDM 346
Query: 171 SKMYDIFRNEG 139
++ DI + G
Sbjct: 347 GRLIDIAGDRG 357
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 121 bits (303), Expect = 2e-25
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 5/190 (2%)
Frame = -1
Query: 693 YAPLHDRIAAYIDKWTANSLSYAGRLLLIKSVLQGIECFWLQIFPLPKSVIKRIYKLCRA 514
Y+PL ++I I WTA LSYAGRL L+ SVL I FWL F LP+ ++ I KLC A
Sbjct: 304 YSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSA 363
Query: 513 FLW-----NKKRHPIAWHDVCLPIEEGGLGIRDVYAWNKALLSKILWKFHQGTETLWVRW 349
FLW + + IAW VC P EGGLG++ + N K++W+ ++LWV+W
Sbjct: 364 FLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQW 423
Query: 348 VHGFYLRNQSIWTWNPRKDDSTLLKRICEIRDELIQKFGSQQSAIDALTPLVNDNGLNSS 169
+ + L+ + W++ S + K++ + RD A + + NG +S
Sbjct: 424 IRTYLLKRNTFWSFRSASQGSWMWKKLLKYRD-----------TAKAFSKVDIRNGETAS 472
Query: 168 KMYDIFRNEG 139
YD + ++G
Sbjct: 473 FWYDDWSSKG 482