BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000311
         (530 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   160   2e-37
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   107   4e-26

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  160 bits (404), Expect = 2e-37
 Identities = 82/138 (59%), Positives = 95/138 (68%)
 Frame = +1

Query: 1   VCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPEDLSSDPFASPLPRGPVPARRIA 180
           V   PGQT  EAE+L+REF KR L FSGRRL   GLP    SDPFASP P  P    ++A
Sbjct: 152 VVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--GSDPFASPSPVRPALTPKVA 209

Query: 181 HVDPFTWANMSYGQCTRVLALYKQLCSCFGAKMFQSTLYTEAVRKVCKLTDVVPVSIPEF 360
           HVDP +W  MS+GQC+R L LYKQLCSCFG KMF S+LY  AVRKV +L +  PV+IPE 
Sbjct: 210 HVDPVSWEGMSFGQCSRALTLYKQLCSCFGVKMFSSSLYGMAVRKVLRLREDFPVAIPEN 269

Query: 361 IGRLGQVDFGAAPAHVYV 414
             RLGQVD  A   H++V
Sbjct: 270 FARLGQVDRDARAVHLFV 287


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  107 bits (267), Expect(2) = 4e-26
 Identities = 59/110 (53%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
 Frame = +1

Query: 1   VCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPEDLSSDPFASPLPR-GPVPARRI 177
           V   PGQT +EAESL+REF KRA  FSG+RL   GLPE     P  S L R       + 
Sbjct: 152 VVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPEG----PIPSLLLRQSACNCPKG 207

Query: 178 AHVDPFTWANMSYGQCTRVLALYKQLCSCFGAKMFQSTLYTEAVRKVCKL 327
            HVDP +W  MS+GQC+R L LY+QLC CFG KMF S+LY  AVR+   L
Sbjct: 208 CHVDPVSWEGMSFGQCSRALTLYRQLCGCFGMKMFSSSLYGMAVRRFSAL 257



 Score = 36.2 bits (82), Expect(2) = 4e-26
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 404 TFMYSYTCSRRVCAMLSAGTWALFKD 481
           T +YSYT S R   M+ +GTWA FKD
Sbjct: 283 TSLYSYTSSSRFVPMIRSGTWAFFKD 308