BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000096
         (365 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...   108   6e-22
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]             108   6e-22
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...   108   6e-22
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...   108   6e-22
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]       104   1e-20
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]       104   1e-20
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]       104   1e-20
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]       104   1e-20
gb|AAR31772.1| RNA-dependent RNA polymerase [Grapevine rupestris...    65   9e-09
gb|AFV34742.1| RNA-dependent RNA polymerase, partial [Grapevine ...    64   2e-08
gb|AGV05451.1| polyprotein [Grapevine rupestris stem pitting-ass...    64   3e-08
gb|AAX40968.1| replicase [Grapevine rupestris stem pitting-assoc...    64   3e-08
gb|AAX40973.1| replicase [Grapevine rupestris stem pitting-assoc...    64   3e-08
gb|AFV73392.1| replicase [Grapevine Rupestris stem pitting virus]      64   3e-08
ref|NP_047281.1| replicase [Rupestris stem pitting-associated vi...    63   4e-08
gb|AAC62910.1| RNA-dependent RNA polymerase [Grapevine rupestris...    63   4e-08
emb|CCD41769.1| RNA-dependent RNA polymerase [Grapevine rupestri...    63   4e-08
emb|CBX19981.1| replicase [Grapevine rupestris stem pitting-asso...    63   4e-08
gb|AAR14342.2| RNA-dependent RNA polymerase [Grapevine rupestris...    61   2e-07
gb|AFR53034.1| replicase polyprotein [Grapevine rupestris stem p...    59   9e-07

>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
           gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
           replication protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|14270249|emb|CAC39422.1| hypothetical
           protein [Citrus leaf blotch virus]
          Length = 1962

 Score =  108 bits (271), Expect = 6e-22
 Identities = 53/106 (50%), Positives = 69/106 (65%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENH+L DV PGVVN    + C IKE K
Sbjct: 61  IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score =  108 bits (271), Expect = 6e-22
 Identities = 53/106 (50%), Positives = 69/106 (65%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENH+L DV PGVVN    + C IKE K
Sbjct: 61  IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score =  108 bits (271), Expect = 6e-22
 Identities = 53/106 (50%), Positives = 69/106 (65%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENH+L DV PGVVN    + C IKE K
Sbjct: 61  IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score =  108 bits (271), Expect = 6e-22
 Identities = 53/106 (50%), Positives = 69/106 (65%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  IY  AA+ ++SHSE  N  FA+SL  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENH+L DV PGVVN    + C IKE K
Sbjct: 61  IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score =  104 bits (260), Expect = 1e-20
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENHIL DV P VV+    I C IKE K
Sbjct: 61  IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score =  104 bits (260), Expect = 1e-20
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENHIL DV P VV+    I C IKE K
Sbjct: 61  IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score =  104 bits (260), Expect = 1e-20
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENHIL DV P VV+    I C IKE K
Sbjct: 61  IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score =  104 bits (260), Expect = 1e-20
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 48  MASLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLG 227
           MA +S K AIE +LG+F+K  +  +Y  AA+ ++SHSE  N  FA++L  + KK  + +G
Sbjct: 1   MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 228 IELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           IEL+ NG  PH HP S+  ENHIL DV P VV+    I C IKE K
Sbjct: 61  IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AAR31772.1| RNA-dependent RNA polymerase [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2161

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  +SLF+ +L    K+ L   GI 
Sbjct: 2   ALSYRTAVEEVLAKFTSDEQSRVSATALKALVDIEESRHSLFSFALPDRCKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  +N +SF    IK+ K
Sbjct: 62  LSPYSFKPHSHPVCKTLENHILYNVLPSYIN-NSFYFVGIKDFK 104


>gb|AFV34742.1| RNA-dependent RNA polymerase, partial [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2178

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = +3

Query: 30  FNTYSLMA-SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLK 206
           F  Y+  A +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K
Sbjct: 10  FREYNCNAMALSYRPAVEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSFALPDRSK 69

Query: 207 KNLTGLGIELFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           + L   GI L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 70  ERLISSGIYLSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 121


>gb|AGV05451.1| polyprotein [Grapevine rupestris stem pitting-associated virus]
          Length = 2161

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDIEESQHNLFSFALSDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AAX40968.1| replicase [Grapevine rupestris stem pitting-associated virus]
          Length = 2161

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDIEESQHNLFSFALSDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AAX40973.1| replicase [Grapevine rupestris stem pitting-associated virus]
          Length = 2161

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDMEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AFV73392.1| replicase [Grapevine Rupestris stem pitting virus]
          Length = 2161

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDIEESQHNLFSFALSDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>ref|NP_047281.1| replicase [Rupestris stem pitting-associated virus]
           gi|3599993|gb|AAC35498.1| replicase [Grapevine rupestris
           stem pitting-associated virus 1]
          Length = 2161

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AAC62910.1| RNA-dependent RNA polymerase [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2161

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>emb|CCD41769.1| RNA-dependent RNA polymerase [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2161

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>emb|CBX19981.1| replicase [Grapevine rupestris stem pitting-associated virus]
          Length = 2161

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDIEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AAR14342.2| RNA-dependent RNA polymerase [Grapevine rupestris stem
           pitting-associated virus]
          Length = 2161

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 39/104 (37%), Positives = 55/104 (52%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A+E +L  F  ++  R+   A +ALV   E  + LF+ +L    K+     GI 
Sbjct: 2   ALSYRPAVEEVLAKFTSDEQSRVSATALKALVDIEESQHGLFSFALSDRCKERPISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH HP  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFKPHSHPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104


>gb|AFR53034.1| replicase polyprotein [Grapevine rupestris stem pitting-associated
           virus]
          Length = 2161

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 39/104 (37%), Positives = 55/104 (52%)
 Frame = +3

Query: 54  SLSYKNAIECMLGDFKKNDIKRIYKPAAEALVSHSELNNSLFAHSLEPFLKKNLTGLGIE 233
           +LSY+ A E +L  F  ++  R+   A +ALV   E  ++LF+ +L    K+ L   GI 
Sbjct: 2   ALSYRPAAEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSFALPDRSKERLISSGIY 61

Query: 234 LFQNGSFPHFHPFSRTPENHILCDVSPGVVNADSFISCPIKEKK 365
           L      PH  P  +T ENHIL +V P  VN +SF    IK+ K
Sbjct: 62  LSPYSFRPHSRPVCKTLENHILYNVLPSYVN-NSFYFVGIKDFK 104