BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000066
         (470 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   258   4e-67
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   258   4e-67
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   258   4e-67
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   258   4e-67
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   258   4e-67
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   257   1e-66
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   257   1e-66
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 256   2e-66
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   256   3e-66
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   247   1e-63
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   221   6e-56
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   201   8e-50
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             190   1e-46
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   190   1e-46
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   172   4e-41
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   171   7e-41
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               171   7e-41
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 171   1e-40
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 171   1e-40
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   169   3e-40

>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  258 bits (660), Expect = 4e-67
 Identities = 130/156 (83%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  258 bits (660), Expect = 4e-67
 Identities = 130/156 (83%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  258 bits (660), Expect = 4e-67
 Identities = 130/156 (83%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  258 bits (660), Expect = 4e-67
 Identities = 130/156 (83%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  258 bits (660), Expect = 4e-67
 Identities = 130/156 (83%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  257 bits (656), Expect = 1e-66
 Identities = 129/156 (82%), Positives = 132/156 (84%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF   HGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHT 969


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  257 bits (656), Expect = 1e-66
 Identities = 129/156 (82%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQP+PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VED TTTLDDFKE L DKF+REIF  AHGHT
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHT 969


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  256 bits (654), Expect = 2e-66
 Identities = 129/156 (82%), Positives = 133/156 (85%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 802  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 861

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS            
Sbjct: 862  TALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPP 921

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VE+ TT LDDF+E L DKF+REIFTEAHGHT
Sbjct: 922  VTHFPVEECTTALDDFREELHDKFDREIFTEAHGHT 957


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  256 bits (653), Expect = 3e-66
 Identities = 126/156 (80%), Positives = 134/156 (85%)
 Frame = +1

Query: 1   YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
           YG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 145 YGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 204

Query: 181 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
           TALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRED++AEFS            
Sbjct: 205 TALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPP 264

Query: 361 XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 265 CTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  247 bits (630), Expect = 1e-63
 Identities = 124/156 (79%), Positives = 129/156 (82%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGFQP PGLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLY
Sbjct: 819  YGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLY 878

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF             
Sbjct: 879  TALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPP 938

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VE+  TTLDDFKE L DKF+REIFT   GHT
Sbjct: 939  VTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHT 974


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  221 bits (564), Expect = 6e-56
 Identities = 111/156 (71%), Positives = 125/156 (80%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            YGF+P+PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLY
Sbjct: 795  YGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLY 854

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+            
Sbjct: 855  TALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPP 914

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VE+ + TL   ++SL+DK++REI    HG T
Sbjct: 915  VTHFPVENASHTLGLIQDSLADKYDREILNTNHGFT 950


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  201 bits (511), Expect = 8e-50
 Identities = 100/156 (64%), Positives = 119/156 (76%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            +GFQP   +HLLVPSL+KKAAF++AGHK STYAGCQGITA K+QILLD++T MC++EVLY
Sbjct: 889  HGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLY 948

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAVDSIHF+N+   SS FWEKLEATPYLKTFLS+VREDKI E+             
Sbjct: 949  TALSRAVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPP 1008

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                 VE+  T L++F E L+ K EREIF E+HGHT
Sbjct: 1009 KTHFPVENGNTILEEFTEELAQKHEREIFNESHGHT 1044


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  190 bits (483), Expect = 1e-46
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYT
Sbjct: 822  GFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYT 881

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA                
Sbjct: 882  ALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPK 941

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                VE+ +  L  + E + +KFEREIFTE  GHT
Sbjct: 942  THFPVENTSCALGAYMEKVPEKFEREIFTEDRGHT 976


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  190 bits (483), Expect = 1e-46
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYT
Sbjct: 822  GFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYT 881

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA                
Sbjct: 882  ALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPK 941

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                VE+ +  L  + E + +KFEREIFTE  GHT
Sbjct: 942  THFPVENTSCALGAYMEKVPEKFEREIFTEDRGHT 976


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  172 bits (436), Expect = 4e-41
 Identities = 85/155 (54%), Positives = 104/155 (67%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKQAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHFVN +  + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCSPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                V+      +D  E + +K EREIF+E HGH+
Sbjct: 1091 THIPVDSAMPIYEDILEQMPEKHEREIFSEKHGHS 1125


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  171 bits (434), Expect = 7e-41
 Identities = 84/156 (53%), Positives = 106/156 (67%)
 Frame = +1

Query: 1    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 180
            +G  P PGLH+LVPSL KK AF++ GHKVSTYAGCQGITAPK+QILL  +T++C++EVLY
Sbjct: 976  HGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVLY 1035

Query: 181  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 360
            TALSRAV SIHFVN++  + AFW+KLE TPYLK FLS +RE+                  
Sbjct: 1036 TALSRAVHSIHFVNASPNNQAFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPP 1095

Query: 361  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                  ED     ++  E + +K EREIF+E HGH+
Sbjct: 1096 RTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHS 1131


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  171 bits (434), Expect = 7e-41
 Identities = 80/153 (52%), Positives = 112/153 (73%)
 Frame = +1

Query: 10   QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 189
            +P+P  HLLVPSL+KK ++T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTAL
Sbjct: 1113 RPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTAL 1172

Query: 190  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 369
            SRAV ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E                 
Sbjct: 1173 SRAVHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTH 1232

Query: 370  XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
              VE++  +L+D  E L +K ERE+++  HG++
Sbjct: 1233 FPVENENLSLEDKVEELLEKHERELYSSDHGYS 1265


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/155 (54%), Positives = 103/155 (66%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                V+      +D  + + +K EREIF+E HGH+
Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHS 1125


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/155 (54%), Positives = 103/155 (66%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                V+      +D  + + +K EREIF+E HGH+
Sbjct: 1091 THIPVDSAMPIYEDLLDQMREKHEREIFSEKHGHS 1125


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  169 bits (428), Expect = 3e-40
 Identities = 83/155 (53%), Positives = 102/155 (65%)
 Frame = +1

Query: 4    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 183
            G  P PGLHLLVPSL KK AF++ GHK STYAGCQG+TAP+VQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 184  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 363
            ALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 364  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 468
                V+      +D  + + +K EREIF+E HGH+
Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHS 1125