BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000040
         (580 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...   193   2e-47
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ...   192   4e-47
gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ...   192   4e-47
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ...   192   4e-47
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   192   4e-47
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...   192   4e-47
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...   192   4e-47
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...   189   3e-46
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...   187   1e-45
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...   187   1e-45
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   184   1e-44
emb|CBI35069.3| unnamed protein product [Vitis vinifera]              184   2e-44
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   183   2e-44
gb|EMJ20786.1| hypothetical protein PRUPE_ppa023422mg, partial [...   183   3e-44
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...   179   6e-43
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...   179   6e-43
gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor...   178   8e-43
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...   177   2e-42
ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III s...   177   2e-42
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   169   4e-40

>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           isoform X1 [Solanum tuberosum]
           gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC2-like isoform X2 [Solanum
           tuberosum]
          Length = 1153

 Score =  193 bits (491), Expect = 2e-47
 Identities = 98/146 (67%), Positives = 115/146 (78%), Gaps = 1/146 (0%)
 Frame = +2

Query: 146 GDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQ 325
           G DS + N  +++   IDKQ LA+P+KN V+K+QL+PEFLKVRGLVKQHLDSFNYFVRT+
Sbjct: 2   GYDSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTE 61

Query: 326 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 505
           IKKIV+AN  I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV
Sbjct: 62  IKKIVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYV 121

Query: 506 NIEYITGSLGSKTTRT-KTVIIGRMP 580
            IEY TGS G  +  T K VIIGRMP
Sbjct: 122 TIEYTTGSHGQTSVSTKKNVIIGRMP 147


>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
          Length = 1034

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
          Length = 1006

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
          Length = 1034

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 1011

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 304
           M +K +D  L N+   + +    +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF
Sbjct: 1   MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 305 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 484
           NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61  NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 485 YAAPIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           YAAPI+VNIEYI GS G KT   K  ++IGRMP
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMP 153


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Solanum lycopersicum]
          Length = 1183

 Score =  189 bits (481), Expect = 3e-46
 Identities = 96/146 (65%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
 Frame = +2

Query: 146 GDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQ 325
           G DS + N  +++   IDKQ LA+ +KN V+K+QL+PEFLKVRGLVKQHLDSFNYFVRT+
Sbjct: 32  GYDSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTE 91

Query: 326 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 505
           IKKIV+AN  I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV
Sbjct: 92  IKKIVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYV 151

Query: 506 NIEYITGSLGSKTTRT-KTVIIGRMP 580
            I+Y TGS G  +  T K VIIGRMP
Sbjct: 152 TIDYTTGSHGQTSVSTKKNVIIGRMP 177


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           isoform X1 [Citrus sinensis]
           gi|568883651|ref|XP_006494573.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC2-like isoform X2 [Citrus
           sinensis]
          Length = 1149

 Score =  187 bits (476), Expect = 1e-45
 Identities = 94/129 (72%), Positives = 107/129 (82%), Gaps = 1/129 (0%)
 Frame = +2

Query: 197 DKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 376
           DKQ LAAPVK+ V+KFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17  DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 377 SIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKTTRTK 556
           SI+LR+KDV IG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GS   KTT  K
Sbjct: 77  SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 557 T-VIIGRMP 580
             V+IGR+P
Sbjct: 137 NDVVIGRIP 145


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
           gi|557534507|gb|ESR45625.1| hypothetical protein
           CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score =  187 bits (476), Expect = 1e-45
 Identities = 94/129 (72%), Positives = 107/129 (82%), Gaps = 1/129 (0%)
 Frame = +2

Query: 197 DKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 376
           DKQ LAAPVK+ V+KFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17  DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 377 SIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKTTRTK 556
           SI+LR+KDV IG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GS   KTT  K
Sbjct: 77  SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 557 T-VIIGRMP 580
             V+IGR+P
Sbjct: 137 NDVVIGRIP 145


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA
           polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  184 bits (467), Expect = 1e-44
 Identities = 97/146 (66%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
 Frame = +2

Query: 152 DSALFNDLQENGLD--IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQ 325
           DS++ N+ ++N ++  IDKQ L AP+K+AV+KFQLLPEFLKVRGLVKQHLDSFNYFV   
Sbjct: 7   DSSIGNN-EQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIG 65

Query: 326 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 505
           IKKIV+AND I S +DP IYLR+KDV IGTPS ++DGV E+L+PH CR+SD TYAAPI V
Sbjct: 66  IKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILV 125

Query: 506 NIEYITGSLGSKTTRTKT-VIIGRMP 580
           N+EYI GS   KT   K  V+IGRMP
Sbjct: 126 NVEYIYGSHDQKTRVEKNDVVIGRMP 151


>emb|CBI35069.3| unnamed protein product [Vitis vinifera]
          Length = 1309

 Score =  184 bits (466), Expect = 2e-44
 Identities = 93/136 (68%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
 Frame = +2

Query: 176 QENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDL 355
           ++  + I K   A PVK AV+KF LLPEFLKVRGLVKQHLDSFNYFV+T IKKIV+AND 
Sbjct: 18  KQEEMSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDR 77

Query: 356 ITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLG 535
           I S +DPSIYLR+KDV IG PS+ +DG+ EKL PH CR+SD+TYAAPI VNIEYITGS  
Sbjct: 78  IVSSVDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHV 137

Query: 536 SKTTRTKT-VIIGRMP 580
            KT   K  V+IGRMP
Sbjct: 138 QKTRVEKNDVVIGRMP 153


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
           vinifera]
          Length = 1142

 Score =  183 bits (465), Expect = 2e-44
 Identities = 93/132 (70%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
 Frame = +2

Query: 188 LDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSR 367
           + I K   A PVK AV+KF LLPEFLKVRGLVKQHLDSFNYFV+T IKKIV+AND I S 
Sbjct: 4   MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63

Query: 368 IDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKTT 547
           +DPSIYLR+KDV IG PS+ +DG+ EKL PH CR+SD+TYAAPI VNIEYITGS   KT 
Sbjct: 64  VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123

Query: 548 RTKT-VIIGRMP 580
             K  V+IGRMP
Sbjct: 124 VEKNDVVIGRMP 135


>gb|EMJ20786.1| hypothetical protein PRUPE_ppa023422mg, partial [Prunus persica]
          Length = 448

 Score =  183 bits (464), Expect = 3e-44
 Identities = 90/130 (69%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
 Frame = +2

Query: 194 IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRID 373
           IDK+ LAAP+K+A +KF LLPEFLKVRGLVKQHLDSFNYFV T IKKIV+AND I S +D
Sbjct: 12  IDKEFLAAPIKSATDKFALLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 71

Query: 374 PSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKT-TR 550
           PSIYLR+KD+ IG PSL +DGV EK+ PH CR+SD+TY+API V++EYI GS   KT   
Sbjct: 72  PSIYLRFKDISIGEPSLTMDGVTEKIAPHTCRLSDMTYSAPIKVDVEYIQGSHDQKTRVE 131

Query: 551 TKTVIIGRMP 580
            K V+IGRMP
Sbjct: 132 KKGVVIGRMP 141


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
           trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
           protein POPTR_0015s005302g, partial [Populus
           trichocarpa]
          Length = 1034

 Score =  179 bits (453), Expect = 6e-43
 Identities = 94/150 (62%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 313
           MVV   DS    ++ ++ +D  K A AAPVK+AV+KFQLLPEFLK RGLVKQHLDSFNYF
Sbjct: 1   MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59

Query: 314 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 493
           +   IKKIV+AND I S +DPS+YLR+ DV IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60  INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119

Query: 494 PIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           PI VNIEYI+GS G K    K  V+IGRMP
Sbjct: 120 PILVNIEYISGSHGRKEKMIKNDVVIGRMP 149


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
           trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
           protein POPTR_0015s005302g, partial [Populus
           trichocarpa]
          Length = 1035

 Score =  179 bits (453), Expect = 6e-43
 Identities = 94/150 (62%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
 Frame = +2

Query: 134 MVVKGDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 313
           MVV   DS    ++ ++ +D  K A AAPVK+AV+KFQLLPEFLK RGLVKQHLDSFNYF
Sbjct: 1   MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59

Query: 314 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 493
           +   IKKIV+AND I S +DPS+YLR+ DV IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60  INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119

Query: 494 PIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           PI VNIEYI+GS G K    K  V+IGRMP
Sbjct: 120 PILVNIEYISGSHGRKEKMIKNDVVIGRMP 149


>gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
          Length = 786

 Score =  178 bits (452), Expect = 8e-43
 Identities = 96/150 (64%), Positives = 111/150 (74%), Gaps = 8/150 (5%)
 Frame = +2

Query: 155 SALFNDLQENGLD-------IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 313
           +A  ND  E G D       IDKQ LAAP+K AV+K+QLLPEFLKVRGLVKQHLDSFNYF
Sbjct: 49  TAFLND--ERGRDGTILSPAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYF 106

Query: 314 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 493
           V T+IKKIV++N  I S +DPSIYLR+ DV IG PS+ +DGV EKL P  CR+SDLTYAA
Sbjct: 107 VNTEIKKIVRSNSRIVSSVDPSIYLRFTDVRIGEPSVTMDGVSEKLDPQTCRLSDLTYAA 166

Query: 494 PIYVNIEYITGSLGSKTTRTKT-VIIGRMP 580
           PI  ++EYI GS   K    KT V+IGRMP
Sbjct: 167 PIKADVEYIHGSHNQKIQSGKTDVVIGRMP 196


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Cucumis sativus]
          Length = 1158

 Score =  177 bits (449), Expect = 2e-42
 Identities = 97/155 (62%), Positives = 114/155 (73%), Gaps = 6/155 (3%)
 Frame = +2

Query: 134 MVVKGDDSALFND-LQENG----LDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLD 298
           MVVK  + A  N+ L +N      DIDKQ +  P+K+AV+KFQLLPEFLKVRGLVKQHLD
Sbjct: 1   MVVKLPEDASKNEKLGDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLD 60

Query: 299 SFNYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISD 478
           SFNYFV T+IKKIV+AND I S  DPSIYLR+ DV IG PS+ ++ V E + PH CR+SD
Sbjct: 61  SFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSD 120

Query: 479 LTYAAPIYVNIEYITGSLGSKTTR-TKTVIIGRMP 580
           LTYAAPI V+IEYI  S   K  R  K V+IGRMP
Sbjct: 121 LTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMP 155


>ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like,
           partial [Cucumis sativus]
          Length = 392

 Score =  177 bits (448), Expect = 2e-42
 Identities = 97/155 (62%), Positives = 114/155 (73%), Gaps = 6/155 (3%)
 Frame = +2

Query: 134 MVVKGDDSALFND-LQENG----LDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLD 298
           MVVK  + A  N+ L +N      DIDKQ +  P+K+AV+KFQLLPEFLKVRGLVKQHLD
Sbjct: 1   MVVKLPEDASKNEKLCDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLD 60

Query: 299 SFNYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISD 478
           SFNYFV T+IKKIV+AND I S  DPSIYLR+ DV IG PS+ ++ V E + PH CR+SD
Sbjct: 61  SFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSD 120

Query: 479 LTYAAPIYVNIEYITGSLGSKTTR-TKTVIIGRMP 580
           LTYAAPI V+IEYI  S   K  R  K V+IGRMP
Sbjct: 121 LTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMP 155


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  169 bits (429), Expect = 4e-40
 Identities = 83/138 (60%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
 Frame = +2

Query: 170 DLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 349
           DL  +   IDK+ L+AP+K+  +KFQL+PEFLKVRGLVKQHLDSFNYF+   I KIV+AN
Sbjct: 30  DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 89

Query: 350 DLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 529
             ITS +DPSIYLR+K V +G PS++     E + PH CR++D+TYAAPI+VNIEY+ GS
Sbjct: 90  SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 149

Query: 530 LGSKTTRTK-TVIIGRMP 580
            G+K    K  VIIGRMP
Sbjct: 150 HGNKAKSAKDNVIIGRMP 167