BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000031
         (8465 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            1833   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  1832   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  1828   0.0  
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  1826   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      1801   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      1799   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      1799   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1796   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   944   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   943   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   940   0.0  
gb|AGK63259.1| replicase [Cherry mottle leaf virus]                   664   0.0  
ref|NP_062428.1| replicase [Cherry mottle leaf virus] gi|9294781...   660   0.0  
ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf ...   653   0.0  
gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus]       649   0.0  
ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi...   647   0.0  
sp|P54891.1|RDRP_ACLSA RecName: Full=RNA-directed RNA polymerase...   641   e-180
dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]      638   e-179
ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus] gi|...   635   e-178
gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus]           634   e-178

>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 1833 bits (4747), Expect = 0.0
 Identities = 983/1883 (52%), Positives = 1253/1883 (66%), Gaps = 42/1883 (2%)
 Frame = -1

Query: 8432 SNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 8253
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 8252 HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 8073
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 8072 SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 7893
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 7892 VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 7713
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 7712 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 7533
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 7532 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPF 7353
            L ++VER VC+ H+++ + F+VV  D + +LDPL           +RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 7352 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 7194
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 7193 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 7014
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 7013 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 6870
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 6869 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 6708
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 6707 CFFNALQHIFDIPIDPYQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 6537
            CFF+A    F++   P   R + + +L+E NG  +  L E IRPNGV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVF 752

Query: 6536 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 6378
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGF 812

Query: 6377 GERSELLNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 6198
             E  E+  F F    FNC  ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQIC 869

Query: 6197 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 6018
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMT 929

Query: 6017 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 5838
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLIN 985

Query: 5837 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 5658
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYV 1045

Query: 5657 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 5487
            V+  G   + +  +  H++++     + R+  SH  +KGNVNV++G  E +S        
Sbjct: 1046 VLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGV 1105

Query: 5486 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 5307
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGTDVTMVC 1163

Query: 5306 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 5127
            GFAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 5126 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 4947
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 4946 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4767
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4766 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4590
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4589 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4410
            A+ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 ARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4409 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4230
            DE+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4229 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4059
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4058 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 3879
            MAV+KRL+FREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 3878 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 3699
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 3698 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 3519
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 3518 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 3339
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 3338 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 3159
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 3158 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 2979
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 2978 THLDKLKTKVRLLFEEQSSEEDI 2910
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
            gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
            leaf blotch virus]
          Length = 1962

 Score = 1832 bits (4746), Expect = 0.0
 Identities = 983/1883 (52%), Positives = 1253/1883 (66%), Gaps = 42/1883 (2%)
 Frame = -1

Query: 8432 SNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 8253
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEV 188

Query: 8252 HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 8073
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 8072 SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 7893
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 7892 VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 7713
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 7712 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 7533
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 7532 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPF 7353
            L ++VER VC+ H+++ + F+VV  D + +LDPL           +RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 7352 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 7194
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 7193 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 7014
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 7013 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GG 6870
            LD F+ +        +H ++  LK AG +  +    DE E +T  E            G 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDVSD----DEEEELTSAEQAGPIKILADPLGF 634

Query: 6869 TKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGN 6708
             K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGN
Sbjct: 635  MKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGN 693

Query: 6707 CFFNALQHIFDIPIDPYQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARF 6537
            CFF+A    F++   P   R + + +L+E NG  +  L E IRPNGV+ E E IY +  F
Sbjct: 694  CFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVF 752

Query: 6536 RNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIY 6378
            R V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  +
Sbjct: 753  RGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGF 812

Query: 6377 GERSELLNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKIC 6198
             E  E+  F F    FNC  ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC
Sbjct: 813  SE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQIC 869

Query: 6197 DPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMH 6018
                D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G  +F++EF+  V    M 
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMT 929

Query: 6017 DASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIE 5838
              SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLIN 985

Query: 5837 AVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS 5658
            A ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  
Sbjct: 986  AFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCV 1045

Query: 5657 VMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHY 5487
            V+  G   + +  R  H++++     + R+  SH  +KGNVNV++G    +S        
Sbjct: 1046 VLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGV 1105

Query: 5486 NAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLT 5307
            N IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + 
Sbjct: 1106 NKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVC 1163

Query: 5306 GFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKE 5127
            GFAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +
Sbjct: 1164 GFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTD 1223

Query: 5126 KSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEH 4947
            KSKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEH
Sbjct: 1224 KSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEH 1283

Query: 4946 DVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDK 4767
            DVD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+
Sbjct: 1284 DVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4766 EQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTR 4590
            ++P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4589 AKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGI 4410
            A+ R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  
Sbjct: 1404 ARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR- 1462

Query: 4409 DEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFD 4230
            DE+DREERL GDPFLKPFI+LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4229 LIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFW 4059
             IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFW
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFW 1579

Query: 4058 MAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKL 3879
            MAV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL
Sbjct: 1580 MAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKL 1639

Query: 3878 QKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFA 3699
            +KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFA
Sbjct: 1640 EKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1699

Query: 3698 PWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILS 3519
            PWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILS
Sbjct: 1700 PWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILS 1759

Query: 3518 FEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRY 3339
            FE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRY
Sbjct: 1760 FEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRY 1819

Query: 3338 EWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVK 3159
            EWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVK
Sbjct: 1820 EWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVK 1879

Query: 3158 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIV 2979
            EPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIV
Sbjct: 1880 EPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIV 1939

Query: 2978 THLDKLKTKVRLLFEEQSSEEDI 2910
            TH+DKLKTKVR LF EQSS+EDI
Sbjct: 1940 THIDKLKTKVRDLFLEQSSDEDI 1962


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1828 bits (4735), Expect = 0.0
 Identities = 980/1882 (52%), Positives = 1248/1882 (66%), Gaps = 42/1882 (2%)
 Frame = -1

Query: 8429 NPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIH 8250
            N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+H
Sbjct: 132  NSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVH 189

Query: 8249 HWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTS 8070
            HW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV +
Sbjct: 190  HWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKT 249

Query: 8069 EGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVV 7890
            E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ +
Sbjct: 250  EAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSI 309

Query: 7889 DMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLF 7710
            DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLF
Sbjct: 310  DMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLF 369

Query: 7709 FEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTL 7530
            FEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGTL
Sbjct: 370  FEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTL 429

Query: 7529 NIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPFF 7350
             ++VER VC+ H+++ + F+VV  D + +LDPL            R DDGYLER+R+PF+
Sbjct: 430  VVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLERIRLPFW 489

Query: 7349 N---YSGDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSKA 7191
            N   Y    R+  ++  L  + + ER   S  +      +I WH   +++   F+S S  
Sbjct: 490  NLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKVDPFISNSIT 549

Query: 7190 VFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEGL 7011
             F   E +  GK  D      K+     + CT           L+  L F    +  EGL
Sbjct: 550  EFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEGL 588

Query: 7010 DAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE------------GGT 6867
            D F+ +        +H ++  LK AG +  +    DE E +T  E            G  
Sbjct: 589  DGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILADPLGFM 635

Query: 6866 KDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNC 6705
            K+       E + + E  G Q  ++   +  ++NY ++F    C   HG+ I  P+DGNC
Sbjct: 636  KECLEEIPIETEPSLEERG-QFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694

Query: 6704 FFNALQHIFDIPIDPYQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFR 6534
            FF+A    F++   P   R + + +L+E NG  +  L E IRP+GV+ E E IY +  FR
Sbjct: 695  FFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFR 753

Query: 6533 NVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYG 6375
             V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + 
Sbjct: 754  GVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFS 813

Query: 6374 ERSELLNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICD 6195
            E  E+  F+F    FNC  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC 
Sbjct: 814  E--EITKFRFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870

Query: 6194 PDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHD 6015
               D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+G V    M  
Sbjct: 871  QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTA 930

Query: 6014 ASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEA 5835
             SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN  LI+A
Sbjct: 931  GSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNTRLIDA 986

Query: 5834 VAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISV 5655
             ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++ + K  V
Sbjct: 987  FSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVV 1046

Query: 5654 MSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYN 5484
            +  G   + +  +  H++++     + R+  SH  +KG++NV++G  E +S        N
Sbjct: 1047 LGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVN 1106

Query: 5483 AIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTG 5304
             IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + G
Sbjct: 1107 KIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTVVCG 1164

Query: 5303 FAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEK 5124
            FAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +K
Sbjct: 1165 FAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDK 1224

Query: 5123 SKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHD 4944
            SKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQARYHN+ D  IL FEHD
Sbjct: 1225 SKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHD 1284

Query: 4943 VDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKE 4764
            VD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D++
Sbjct: 1285 VDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344

Query: 4763 QP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRA 4587
            +P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404

Query: 4586 KERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGID 4407
            + R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-D 1463

Query: 4406 EMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDL 4227
            E+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD 
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523

Query: 4226 IRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWM 4056
            IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWM
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWM 1580

Query: 4055 AVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQ 3876
            AV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+
Sbjct: 1581 AVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLE 1640

Query: 3875 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAP 3696
            KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAP
Sbjct: 1641 KSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1700

Query: 3695 WCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSF 3516
            WCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSF
Sbjct: 1701 WCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSF 1760

Query: 3515 EMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYE 3336
            E+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYE
Sbjct: 1761 EVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYE 1820

Query: 3335 WREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKE 3156
            WR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKE
Sbjct: 1821 WRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKE 1880

Query: 3155 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVT 2976
            PEL YNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVT
Sbjct: 1881 PELAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVT 1940

Query: 2975 HLDKLKTKVRLLFEEQSSEEDI 2910
            H+DKLKTKVR LF EQSS+EDI
Sbjct: 1941 HIDKLKTKVRDLFLEQSSDEDI 1962


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1826 bits (4730), Expect = 0.0
 Identities = 978/1882 (51%), Positives = 1249/1882 (66%), Gaps = 41/1882 (2%)
 Frame = -1

Query: 8432 SNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEI 8253
            +N +   +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+
Sbjct: 131  NNSHTSFINRLVASKDVSRYTEEA--DAFFQSKKGGPELFSRNFIKSLENKEAVFFHDEV 188

Query: 8252 HHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVT 8073
            HHW+K  +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV 
Sbjct: 189  HHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVK 248

Query: 8072 SEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDV 7893
            +E YEQ  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ 
Sbjct: 249  TEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNS 308

Query: 7892 VDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 7713
            +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL
Sbjct: 309  IDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFL 368

Query: 7712 FFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGT 7533
            FFEQ CKRLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGT
Sbjct: 369  FFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGT 428

Query: 7532 LNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPF 7353
            L ++VER VC+ H+++ + F+VV  D + +LDPL           +RVDDGYLER+R+PF
Sbjct: 429  LVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPF 488

Query: 7352 FNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSK 7194
            +N +  D ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S 
Sbjct: 489  WNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSI 548

Query: 7193 AVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEG 7014
              F   E +  GK  D      K+     + CT           L+  L F    +  EG
Sbjct: 549  TEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEG 587

Query: 7013 LDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVT----------------- 6885
            LD F+ +        +H ++  LK AG +  +    DE E +T                 
Sbjct: 588  LDGFNLE--------EHLERR-LKAAGHDTSD----DEEEELTSVEQTGPIKILADPLSF 634

Query: 6884 LNEGGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNC 6705
            +NE   +     E       Q  ++   +  ++NY ++F    C   HG+ I  P+DGNC
Sbjct: 635  MNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694

Query: 6704 FFNALQHIFDIPIDPYQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFR 6534
            FF+A    F++   P   R + + +L+E NG  +  L E IRP+G++ E E IY +  FR
Sbjct: 695  FFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFR 753

Query: 6533 NVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYG 6375
             V +++H    + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + 
Sbjct: 754  GVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFS 813

Query: 6374 ERSELLNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICD 6195
            E  E+  F F    FNC  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC 
Sbjct: 814  E--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870

Query: 6194 PDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHD 6015
               D+N AL+ FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M  
Sbjct: 871  QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930

Query: 6014 ASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEA 5835
             SF +MPKG QK+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+A
Sbjct: 931  GSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLIDA 986

Query: 5834 VAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISV 5655
             ++ +K     +   L++ +   WS +  E +G ++ DC    EAL + ++++   K  V
Sbjct: 987  FSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVV 1046

Query: 5654 MSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYN 5484
            +  G   + +  +  H++++     + R+  SH  +KGNVNV++G  E +S        N
Sbjct: 1047 LGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVN 1106

Query: 5483 AIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTG 5304
             IQF A  E    L  SFL  TTGI LG+ LDNG K+F   H L    K +      + G
Sbjct: 1107 KIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVCG 1164

Query: 5303 FAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEK 5124
            FAGSGKSR +Q WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +K
Sbjct: 1165 FAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDK 1224

Query: 5123 SKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHD 4944
            SKLDLI++DELTLFPNGYLD L +EL  +    +++L+FDPLQAR+HN+ D  IL FEHD
Sbjct: 1225 SKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHD 1284

Query: 4943 VDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKE 4764
            VD L G + ++Y+Y + R+++ F+  F       +    + ++W+  +  SI     D++
Sbjct: 1285 VDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQ 1344

Query: 4763 QP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRA 4587
            +P DVLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR+
Sbjct: 1345 EPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRS 1404

Query: 4586 KERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGID 4407
            + R S C + LGG+++F V  K  L    L+ EKI   +L  M + NL+  + E GC  D
Sbjct: 1405 RTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-D 1463

Query: 4406 EMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDL 4227
            E+DREERL GDPFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD 
Sbjct: 1464 EVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDF 1523

Query: 4226 IRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWM 4056
            IR KE+REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWM
Sbjct: 1524 IREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWM 1580

Query: 4055 AVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQ 3876
            AV+KRLVFREE EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+
Sbjct: 1581 AVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLE 1640

Query: 3875 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAP 3696
            KS  TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAP
Sbjct: 1641 KSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1700

Query: 3695 WCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSF 3516
            WCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSF
Sbjct: 1701 WCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSF 1760

Query: 3515 EMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYE 3336
            E+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYE
Sbjct: 1761 EIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYE 1820

Query: 3335 WREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKE 3156
            WR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKE
Sbjct: 1821 WRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKE 1880

Query: 3155 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVT 2976
            PELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVT
Sbjct: 1881 PELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVT 1940

Query: 2975 HLDKLKTKVRLLFEEQSSEEDI 2910
            H+DKLKTKVR LF EQSS+EDI
Sbjct: 1941 HIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1801 bits (4664), Expect = 0.0
 Identities = 964/1870 (51%), Positives = 1227/1870 (65%), Gaps = 36/1870 (1%)
 Frame = -1

Query: 8411 LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 8232
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  INRLVASKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 8231 IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 8052
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 8051 ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 7872
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 7871 KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 7692
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 7691 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 7512
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 7511 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPFFNYSG-D 7335
             VC+ HI++ + F+VV  D + +LDPL           ERVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 7334 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 7173
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 7172 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 7020
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESES 614

Query: 7019 EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNEGGTKDGEH 6852
            EGL   + + +   D  +   +  +    +  P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 6851 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 6672
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 6671 PIDPYQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 6507
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 6506 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 6342
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 6341 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 6162
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 6161 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 5982
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 5981 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 5802
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 5801 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 5622
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 5621 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 5448
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 5447 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 5268
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 5267 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 5088
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 5087 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 4908
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 4907 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 4731
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 4730 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4551
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4550 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDREERLSGDP 4371
            GMD+F +     L    L  ++I   +   M + NL+ ++ + GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4370 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4191
            FLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4190 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4020
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4019 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 3840
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 3839 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 3660
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 3659 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 3480
            LPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFDACQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHLMKDAHFPQ 1797

Query: 3479 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 3300
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 3299 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 3120
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 3119 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 2940
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 2939 FEEQSSEEDI 2910
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1799 bits (4660), Expect = 0.0
 Identities = 964/1870 (51%), Positives = 1227/1870 (65%), Gaps = 36/1870 (1%)
 Frame = -1

Query: 8411 LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 8232
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 8231 IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 8052
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 8051 ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 7872
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 7871 KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 7692
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 7691 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 7512
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 7511 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPFFNYSG-D 7335
             VC+ HI++ + F+VV  D + +LDPL           ERVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 7334 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 7173
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 7172 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 7020
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESES 614

Query: 7019 EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNEGGTKDGEH 6852
            EGL   + + +   D  +   +  +    +  P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 6851 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 6672
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 6671 PIDPYQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 6507
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 6506 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 6342
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 6341 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 6162
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 6161 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 5982
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 5981 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 5802
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 5801 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 5622
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 5621 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 5448
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 5447 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 5268
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 5267 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 5088
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 5087 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 4908
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 4907 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 4731
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 4730 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4551
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4550 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDREERLSGDP 4371
            GMD+F +     L    L  ++I   +L  M + NL+ ++ + GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4370 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4191
            FLKPFI+LGQRI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4190 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4020
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4019 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 3840
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 3839 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 3660
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 3659 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 3480
            LPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQ 1797

Query: 3479 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 3300
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 3299 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 3120
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 3119 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 2940
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 2939 FEEQSSEEDI 2910
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 961/1876 (51%), Positives = 1231/1876 (65%), Gaps = 42/1876 (2%)
 Frame = -1

Query: 8411 LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 8232
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 8231 IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 8052
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 8051 ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 7872
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 7871 KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 7692
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 7691 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 7512
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 7511 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPFFNYSG-D 7335
             VC+ HI++ + F+VV  D + +LDPL           ERVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 7334 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 7173
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 7172 GIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGVEPEGLDAF 7002
             +   + H + Y+ +     K+ ++     +++ ++       E +  E  ++  G D  
Sbjct: 557  ALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRLQSAGRDPI 610

Query: 7001 SFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHGYQ 6822
              ++  L  G    + +G  DA +   E      S  V      + +GE +   ++    
Sbjct: 611  ESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQHRADLEVES 665

Query: 6821 NGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPADGNCFFNAL 6690
             G   K++S +                +++ ++F    C   HG  I  P DGNCFF+A 
Sbjct: 666  EGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAF 725

Query: 6689 QHIFDIPIDPYQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIV 6519
               FD P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V ++
Sbjct: 726  AATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLI 784

Query: 6518 VHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSEL 6360
            +H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL
Sbjct: 785  MHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--EL 842

Query: 6359 LNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDY 6180
             NF F    FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+
Sbjct: 843  RNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDF 901

Query: 6179 NAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLI 6000
            N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +
Sbjct: 902  NCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFL 961

Query: 5999 MPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL 5820
            MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L
Sbjct: 962  MPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKAL 1017

Query: 5819 KSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGH 5640
                  +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G 
Sbjct: 1018 NRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGA 1077

Query: 5639 TLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNA 5466
              V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A
Sbjct: 1078 VRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIA 1137

Query: 5465 EAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGK 5286
            + E    L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGK
Sbjct: 1138 DFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGK 1195

Query: 5285 SRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLI 5106
            SR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I
Sbjct: 1196 SRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMI 1255

Query: 5105 ILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTG 4926
            +LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G
Sbjct: 1256 VLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIG 1315

Query: 4925 EKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVL 4749
             ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVL
Sbjct: 1316 GQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVL 1375

Query: 4748 LVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSF 4569
            LV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SF
Sbjct: 1376 LVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSF 1435

Query: 4568 CISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDREE 4389
            C + LGGMD+F +     L    L  ++I   +   M + NL+ ++ + GC  DE+DREE
Sbjct: 1436 CSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREE 1494

Query: 4388 RLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEE 4209
            RL GDPFLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+
Sbjct: 1495 RLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQ 1554

Query: 4208 REYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRL 4038
            REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRL
Sbjct: 1555 REYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRL 1611

Query: 4037 VFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATI 3858
            VFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TI
Sbjct: 1612 VFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTI 1671

Query: 3857 KSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLE 3678
            KSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 1672 KSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 1731

Query: 3677 SQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMK 3498
            +QIR QLPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFD CQDEYILSFE+HLMK
Sbjct: 1732 AQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMK 1791

Query: 3497 DAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQP 3318
            DA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQP
Sbjct: 1792 DAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQP 1851

Query: 3317 IAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYN 3138
            IAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYN
Sbjct: 1852 IAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYN 1911

Query: 3137 RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLK 2958
            RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLK
Sbjct: 1912 RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLK 1971

Query: 2957 TKVRLLFEEQSSEEDI 2910
            T+V+ LF EQSS+EDI
Sbjct: 1972 TRVKDLFLEQSSDEDI 1987


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1796 bits (4651), Expect = 0.0
 Identities = 960/1876 (51%), Positives = 1230/1876 (65%), Gaps = 42/1876 (2%)
 Frame = -1

Query: 8411 LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 8232
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 8231 IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 8052
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 8051 ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 7872
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 7871 KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 7692
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 7691 RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 7512
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 7511 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXERVDDGYLERVRIPFFNYSG-D 7335
             VC+ HI++ + F+VV  D + +LDPL           ERVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 7334 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 7173
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 7172 GIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGVEPEGLDAF 7002
             +   + H + Y+ +     K+ ++     +++ ++       E +  E  ++  G D  
Sbjct: 557  ALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRLQSAGRDPI 610

Query: 7001 SFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHGYQ 6822
              ++  L  G    + +G  DA +   E      S  V      + +GE +   ++    
Sbjct: 611  ESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQHRADLEVES 665

Query: 6821 NGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPADGNCFFNAL 6690
             G   K++S +                +++ ++F    C   HG  I  P DGNCFF+A 
Sbjct: 666  EGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAF 725

Query: 6689 QHIFDIPIDPYQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIV 6519
               FD P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V ++
Sbjct: 726  AATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLI 784

Query: 6518 VHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSEL 6360
            +H      +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL
Sbjct: 785  MHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--EL 842

Query: 6359 LNFKFVESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDY 6180
             NF F    FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+
Sbjct: 843  RNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDF 901

Query: 6179 NAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLI 6000
            N AL+ FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +
Sbjct: 902  NCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFL 961

Query: 5999 MPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL 5820
            MP+G Q++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L
Sbjct: 962  MPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKAL 1017

Query: 5819 KSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGH 5640
                  +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G 
Sbjct: 1018 NRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGA 1077

Query: 5639 TLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNA 5466
              V +  +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A
Sbjct: 1078 VRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIA 1137

Query: 5465 EAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGK 5286
            + E    L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGK
Sbjct: 1138 DFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGK 1195

Query: 5285 SRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLI 5106
            SR +Q WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I
Sbjct: 1196 SRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMI 1255

Query: 5105 ILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTG 4926
            +LDELTLFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G
Sbjct: 1256 VLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIG 1315

Query: 4925 EKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVL 4749
             ++L+Y+Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVL
Sbjct: 1316 GQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVL 1375

Query: 4748 LVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSF 4569
            LV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SF
Sbjct: 1376 LVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSF 1435

Query: 4568 CISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDREE 4389
            C + LGGMD+F +     L    L  ++I   +   M + NL+ ++ + GC  DE+DREE
Sbjct: 1436 CSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREE 1494

Query: 4388 RLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEE 4209
            RL GDPFLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+
Sbjct: 1495 RLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQ 1554

Query: 4208 REYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRL 4038
            REYREDMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRL
Sbjct: 1555 REYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRL 1611

Query: 4037 VFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATI 3858
            VFREE EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TI
Sbjct: 1612 VFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTI 1671

Query: 3857 KSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLE 3678
            KSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 1672 KSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 1731

Query: 3677 SQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMK 3498
            +QIR QLPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYILSFE+HLMK
Sbjct: 1732 AQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMK 1791

Query: 3497 DAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQP 3318
            DA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQP
Sbjct: 1792 DAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQP 1851

Query: 3317 IAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYN 3138
            IAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYN
Sbjct: 1852 IAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYN 1911

Query: 3137 RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLK 2958
            RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLK
Sbjct: 1912 RFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLK 1971

Query: 2957 TKVRLLFEEQSSEEDI 2910
            T+V+ LF EQSS+EDI
Sbjct: 1972 TRVKDLFLEQSSDEDI 1987


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  944 bits (2440), Expect = 0.0
 Identities = 466/618 (75%), Positives = 518/618 (83%), Gaps = 3/618 (0%)
 Frame = -1

Query: 4754 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4575
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4574 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4395
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ + GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4394 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4215
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4214 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4044
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4043 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 3864
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 3863 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 3684
            TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 3683 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 3504
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDI VESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHL 416

Query: 3503 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 3324
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 3323 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 3144
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 3143 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 2964
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 2963 LKTKVRLLFEEQSSEEDI 2910
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus] gi|571026291|emb|CDF66416.2|
            replication-associated polyprotein [Apricot vein clearing
            associated virus]
          Length = 1679

 Score =  943 bits (2437), Expect = 0.0
 Identities = 530/1178 (44%), Positives = 717/1178 (60%), Gaps = 44/1178 (3%)
 Frame = -1

Query: 6317 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 6138
            ++GR S F + S EIDYGHNG  Y    W + +D+ I     D  +NA LVQ YD+GS +
Sbjct: 511  FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567

Query: 6137 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 5958
            G+H+DNE+ Y   PILTVN  G+A F  EF  G     + D   +++     ++ RH+V 
Sbjct: 568  GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLRKKRHRVT 623

Query: 5957 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 5787
            + +  RIS+TFR+HV  ++ + +    +++    KN C+I AVA  L   S+ +  K   
Sbjct: 624  SLSDSRISLTFRRHVCRMNKSPLEFF-SNNGKLGKNKCIIHAVAMALGQTSNTVANKIVA 682

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 5616
            +  D ++      +D          +   + L+  +  +++   M      L+K  F   
Sbjct: 683  QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 739

Query: 5615 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 5436
              H  +L +  N             ++        +    ++   IQ+ A+ E+ +KL  
Sbjct: 740  DEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 799

Query: 5435 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 5280
            SFL  TTG +L E++  G +FF     +             + GFAGSGKS        R
Sbjct: 800  SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 859

Query: 5279 VMQD-WLVKRKKG--------------------NFIVVCPRVTLMHDWLFKLGSEPRDAH 5163
            + ++  L K KKG                    +  ++ PR  L  DW  KLG    +  
Sbjct: 860  ISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 919

Query: 5162 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 4983
             V TFE   K   SK+ LI++DELTLFPNGY+D L F +       +++LIFDPLQARY 
Sbjct: 920  SVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYD 979

Query: 4982 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPM--------PSGTAS 4827
            +  D  IL  EHDVD + G+ E+ Y+Y S R         +E+L           +G  +
Sbjct: 980  SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKNEVDAESRETGKGA 1039

Query: 4826 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 4650
              +  + +N  +++    ++  P DVLLV S  E  ++ +  +T+TFGE+QGLT +H  I
Sbjct: 1040 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1099

Query: 4649 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4470
            +LSE++A S++ RW VALTRA+++V+F   HL G++ FL + ++ L    + K  + K +
Sbjct: 1100 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKR 1159

Query: 4469 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4290
            L  M RA L +   +   G DE+DRE+RL GD FLK  I+LGQR    E   +EP   + 
Sbjct: 1160 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKE 1219

Query: 4289 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4110
              +TH F+ + NFAQCYNFD IR KE RE+R    VT+QF D+Y I        T GP+R
Sbjct: 1220 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKHTAGPLR 1279

Query: 4109 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 3930
            F+AIYP+H   DD+TF MAV KRL F  E + R +L  AH  G +L++N  +   ++F  
Sbjct: 1280 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1339

Query: 3929 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 3750
            D  L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1340 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1399

Query: 3749 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 3570
            AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKKH   D+CV
Sbjct: 1400 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCV 1459

Query: 3569 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 3390
            ESDYEAFDA QD+YILSFE+ +M+    P+++I AY+DLK  LGCKLGHFA+MRFTGEF 
Sbjct: 1460 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1519

Query: 3389 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 3210
            TFLFNTLAN+AFTMCRYEW  G PIAFAGDDMCAL NL +   F  +FEKISLKAK + T
Sbjct: 1520 TFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQIT 1579

Query: 3209 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 3030
            E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1580 EVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1639

Query: 3029 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 2916
            K E Q++YHQA VRFIV HL  L+TKV+ LF EQS+E+
Sbjct: 1640 KREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  232 bits (591), Expect = 3e-57
 Identities = 124/315 (39%), Positives = 181/315 (57%), Gaps = 10/315 (3%)
 Frame = -1

Query: 8462 IKEKKVQCIKSNPN---LEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSED------HKFS 8310
            IK  KV+ + +      L+ +N ++  +D GRY   V   S    S+S +        F 
Sbjct: 103  IKPSKVESLATKGKKSVLKTINRLLCAKDFGRYD--VDTDSSVIRSISREAPDILPEPFV 160

Query: 8309 RGCKKILGLHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPK 8130
            R  K      ++   HDE+HHW+   +  FL+  +P R VFSVVYP E+L G   SQNPK
Sbjct: 161  RAVKG-----RNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPK 215

Query: 8129 MYTFKIIR-DRLFFFPDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLF 7953
            MY F+  + D++ FFPDG  SEGYEQ ANL WLF   +       WT+ R  S Y+HHLF
Sbjct: 216  MYKFQDSKSDKIVFFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLF 275

Query: 7952 EIVPGRLHTESTFFFNDFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLE 7773
            E+VPG   T+   FFNDF+ +D+  IFK+RF   D  P++   V +VYSYL+CLKKPD++
Sbjct: 276  EVVPGNYFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQ 335

Query: 7772 SGLAKLRQIIGDDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLV 7593
            S +AKL+Q++GDD++++  +FF  L  R++     F +F  +++     K ++  P +L+
Sbjct: 336  SAMAKLKQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLL 395

Query: 7592 RHTKTWKCNNLFEFL 7548
                TWK  N  + L
Sbjct: 396  NGFMTWKSGNFIKKL 410


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  940 bits (2430), Expect = 0.0
 Identities = 464/618 (75%), Positives = 517/618 (83%), Gaps = 3/618 (0%)
 Frame = -1

Query: 4754 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 4575
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4574 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4395
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ + GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4394 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4215
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4214 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4044
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4043 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 3864
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 3863 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 3684
            TI+SHSIRSD+DWALNDVFLFMKSQL TK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIRSHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 3683 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 3504
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDICVESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHL 416

Query: 3503 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 3324
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 3323 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 3144
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 3143 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 2964
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 2963 LKTKVRLLFEEQSSEEDI 2910
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>gb|AGK63259.1| replicase [Cherry mottle leaf virus]
          Length = 1887

 Score =  664 bits (1712), Expect = 0.0
 Identities = 443/1172 (37%), Positives = 641/1172 (54%), Gaps = 49/1172 (4%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSD 6141
            K ++S +++    + Y HN + YP       + E I+K  D  G  +NAALVQ Y++G  
Sbjct: 703  KLKKSIYVTLDSPMVYFHNSISYPSMEASGLIKEWILKKADDYGVPFNAALVQVYEKGCI 762

Query: 6140 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 5961
            LG H+DNE  Y + PILTVN+SG A FS +  G    +E+     L+MP+  Q++ RH V
Sbjct: 763  LGMHKDNESCYGNHPILTVNVSGEATFSTDCCGNT--IELKSGDELLMPENFQRKFRHGV 820

Query: 5960 HAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVK-RAL 5787
             + +  R+S+T R H RD S       E      KK  CL  A+AE +   P +V  R L
Sbjct: 821  RSDSDGRMSVTLRVHERDFSFE-----EKRKFVDKKYDCLFIAIAEMISKKPEEVMLRCL 875

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
             + D+   +       G  L D   +    ++ +E   D   I V   G  L K+  R  
Sbjct: 876  NTLDRCIMNK------GCDLTDLRSICNGYEIKVECQGDCGLIEVGDTGLPLGKLLLRGN 929

Query: 5609 HYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVEHYNAI-QFNAEAEKFL 5448
            H++L  +      +L  S    +   G ++ V+   I+ +  +E   +I +   + ++  
Sbjct: 930  HFSLCSKRRSNLDSLANSMKEVSSLAGGLDYVMFNFIKRLKLIEPDISISETKVDIKRGG 989

Query: 5447 KLRKSFLQRTTGILLGEVLDNGGKFFKEAH----------------DLAIETKVVSNL-- 5322
            KL K  ++  TGI+      +G +  K                   D   + K++S L  
Sbjct: 990  KLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSSDMRSLIGAMRGNVDGIEKNKLLSELEE 1049

Query: 5321 -------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 5169
                    + + GFAGSGKS  +Q+ + K  +G+   +VVCPR  L  DW  K G E  D
Sbjct: 1050 LNFQKVPIYGIFGFAGSGKSHTIQNLISKEFRGSQGLMVVCPRKFLAKDWSEK-GVEEMD 1108

Query: 5168 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSC--AEVVLIFDPLQ 4995
               + TFE+ +K +     + ILDE+TL P G+ D L  ++    +   + ++ + DPLQ
Sbjct: 1109 ---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKNSTIICLGDPLQ 1165

Query: 4994 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SGTASDGK 4818
            A Y ++ D   L+ E +V  L  E  ++Y + S R+NK    Q       P +G     +
Sbjct: 1166 ASYFSQKDDSYLEREAEVKRLFPEG-VEYKWFSHRINKFVAKQLSIQTTNPFAGIDGQSQ 1224

Query: 4817 IW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4644
            I+  + S   SIR++  + E   ++LV S +EK +Y    RT+TFGE+QGLTF    IVL
Sbjct: 1225 IYGDVQSAICSIRKTGVEVE---IILVASMIEKELYNNLGRTITFGESQGLTFGVGVIVL 1281

Query: 4643 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINK--VK 4470
            SE T   ++    VA+TR  +  SF +   G  D+++   K+ L          +K  + 
Sbjct: 1282 SEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFIL 1341

Query: 4469 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4290
                 + NL  + ++ G GIDEMDREERLSGDP+LK  IYLG+R +  E +      E+ 
Sbjct: 1342 SSSSVKLNLSEKLIKKGAGIDEMDREERLSGDPWLKTQIYLGKRFHLREPLGQVCNLEDS 1401

Query: 4289 RCQTHLFI--SEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDT--TV 4122
              + HL I  S+  + +  N   ++ +E+RE++     + QF +     GP  +      
Sbjct: 1402 AIKCHLPICNSQTLYVELSN---MKAREDREFKGKDGWSKQFREE---AGPNWSSPYKIA 1455

Query: 4121 GPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKI 3942
             PM F+AIYP+H   DD+TF+ A+KKRL F     N  +   +   G  L   F    ++
Sbjct: 1456 QPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVASNYVKFKQSQSRGQYLLKVFLEHIEL 1515

Query: 3941 DFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3762
                +Q LL +CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+F
Sbjct: 1516 RPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRF 1575

Query: 3761 CDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMR 3582
             DAKAGQTLACFQH ILV+F+PWCRY+E  +   +PE  YIH  +NF +L  + K+    
Sbjct: 1576 EDAKAGQTLACFQHRILVEFSPWCRYVEKILSACMPENFYIHQRKNFSELESFAKRFSDG 1635

Query: 3581 DICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFT 3402
              CVESDY AFD  QD  IL+FE+ L++  G+ + ++++Y+ +KC LGCKLG FA+MRFT
Sbjct: 1636 STCVESDYTAFDVSQDHTILAFEVELLRYVGWDESILNSYIKMKCTLGCKLGGFAIMRFT 1695

Query: 3401 GEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAK 3222
            GEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E I EK+SLKAK
Sbjct: 1696 GEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREMSKHEHILEKLSLKAK 1755

Query: 3221 VERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 3042
            V RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E S+AY L ERL
Sbjct: 1756 VNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERL 1815

Query: 3041 YEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 2946
            ++ L+   Q+ YHQ   RF V +   L+   R
Sbjct: 1816 FQYLEI-GQLNYHQVLARFSVKNSHLLRGSAR 1846



 Score =  118 bits (295), Expect = 5e-23
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 13/281 (4%)
 Frame = -1

Query: 8423 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 8244
            N ++ N ++  RD  RY ++           S                 ++F HDEIH+W
Sbjct: 120  NYDIFNRLVTSRDKSRYGDLTQPSRIGGPKGS-----------------NYFIHDEIHYW 162

Query: 8243 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 8064
            S+  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I +  L + PDG  SE 
Sbjct: 163  SRPQLETFLDLKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES 222

Query: 8063 YEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPG-RLHTESTFF 7911
            Y Q     +L       FKNK   DG  K +++    +  +HH+F I P   L  +    
Sbjct: 223  YTQSIENGYLLSTNCISFKNK---DGVRKQYSVSLVYTLGSHHVFHIFPNLGLIEDEVRR 279

Query: 7910 FNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDD 7734
            F  +D+ D+  +FK   +     FP++     K++ Y+  LKKPD +S +AKLRQ+   +
Sbjct: 280  FGPYDLFDVGSLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQLCDSE 337

Query: 7733 VEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 7620
            + I+     ++  KR IE+G        F   L +H F K+
Sbjct: 338  ISIEAVFLIQEFAKR-IEKGGVLSWSCSFFEYLKDHFFDKI 377


>ref|NP_062428.1| replicase [Cherry mottle leaf virus]
            gi|9294781|gb|AAF86666.1|AF170028_1 216kDa protein
            [Cherry mottle leaf virus]
          Length = 1887

 Score =  660 bits (1704), Expect = 0.0
 Identities = 436/1183 (36%), Positives = 639/1183 (54%), Gaps = 60/1183 (5%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPR-------NGWLSSMDEIIKICDPDGDYNAALVQFY 6156
            KG++S +++    + Y HN + YP          W+ S  E     D    +NAALVQ Y
Sbjct: 703  KGKKSVYVTLDSPMVYFHNSISYPSIEATGLIKDWILSKAE-----DYGVPFNAALVQVY 757

Query: 6155 DEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQ 5976
            ++   LG H+DNE  Y + PILTVN+SG A FS +  G   +++  D   L+MP+  Q++
Sbjct: 758  EKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTMELDSGDE--LLMPEDFQRK 815

Query: 5975 ARHKVHAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKV 5799
             RH V + T  R+S+T R H RD S       E     + K  CL  A+A  +   P  +
Sbjct: 816  FRHGVKSITDGRMSVTLRVHERDFSFE-----EKRKFIEGKYDCLFVAMAAMISKKPEDI 870

Query: 5798 K-RALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKI 5625
              + L + D+   +       G  L D   +    ++ +E   D   + +   G  L K+
Sbjct: 871  MFKCLNTLDRCVMNK------GCDLTDLRSICSGYEIKVECQGDCGLVEIGDIGLPLGKL 924

Query: 5624 QFRKGHYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVE-HYNAIQFNAE 5463
              R  H+TL  +      +L  SS   +   G ++ V+   I+ +  +E   +  +   +
Sbjct: 925  ILRGNHFTLCSKRRSNLDSLANSSKDVSSLSGGIDYVMVNFIKRLRSIEPDLSRSEIKVD 984

Query: 5462 AEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAI----------------ETKVV 5331
             ++  KL K  ++  TGI+      +G +  K   + A                 + K++
Sbjct: 985  IKRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLIGAMRGNVDGMEKNKLL 1044

Query: 5330 SNL---------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLG 5184
            + L          + + GFAGSGKS  +Q+ + K  +G+   ++VCPR  L  DW  K G
Sbjct: 1045 NELEELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGSQGLMIVCPRKFLAKDWSEK-G 1103

Query: 5183 SEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ---MKSCAEVVL 5013
             E  D   + TFE+ +K +     + ILDE+TL P G+ D L  ++     +KS + ++ 
Sbjct: 1104 VEEMD---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKS-STIIC 1159

Query: 5012 IFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SG 4836
            + DPLQA Y ++ D   L+ E +V  L  +  ++Y + S R+NK    Q          G
Sbjct: 1160 LGDPLQASYFSQKDDSYLEREPEVKRLFKDG-VEYKWFSHRVNKFTARQLSITTTNTFPG 1218

Query: 4835 TASDGKIW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFN 4662
              S  +I+  + S   SI+++  D E   ++LV S +EK +Y    RT+TFGE+QGLTF 
Sbjct: 1219 IDSQSQIYGDVQSAICSIQKTGIDVE---IILVASMIEKELYCNLGRTITFGESQGLTFG 1275

Query: 4661 HVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKI 4482
               +VLSE T   ++    VA+TR  +  SF +   G  D+++   K+ L          
Sbjct: 1276 VGVVVLSEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGA 1335

Query: 4481 NK--VKLQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEV 4320
            +K  +      + NL  + ++ G GIDEMDREERLSGDP+LK  I+LG+R +     G+V
Sbjct: 1336 SKDFIMSSSSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLKSQIFLGKRFHLREPLGQV 1395

Query: 4319 VQIEP---ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIR 4149
            V +E    +C  P C       E           +R +E+RE++     + QF +     
Sbjct: 1396 VNLEDSAIKCHLPICNNQTLYVE--------LSKMRAREDREFKGKDGWSKQFREE---A 1444

Query: 4148 GPRCNDT--TVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGL 3975
            GP          PM F+AIYP+H   DD+TF+ A+KKRL F     N ++   +   G  
Sbjct: 1445 GPNWKSPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVANNYAKFKQSQSRGQY 1504

Query: 3974 LYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMK 3795
            L   F     +    +Q LL +CR +FE  KL KS ATI +HS RSD DW L+ +FLFMK
Sbjct: 1505 LLKVFLEHVNLKPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMK 1564

Query: 3794 SQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDD 3615
            SQLCTKFEK+F DAKAGQTLACFQH ILV+F+PWCRY+E  +    P+  YIH  +NF +
Sbjct: 1565 SQLCTKFEKRFEDAKAGQTLACFQHRILVEFSPWCRYVEKILTACTPDNFYIHQRKNFSE 1624

Query: 3614 LNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGC 3435
            L  + K+     ICVESDY AFD  QD  IL+FE+ L++  G+ ++++++Y+ +KC LGC
Sbjct: 1625 LENFAKRFSDGSICVESDYTAFDVSQDHTILAFEVELLRFIGWDEKILNSYIKMKCTLGC 1684

Query: 3434 KLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFE 3255
            +LG FA+MRFTGEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E
Sbjct: 1685 RLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREVSTHE 1744

Query: 3254 EIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIE 3075
             I +K+SLKAKV RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E
Sbjct: 1745 HILDKLSLKAKVNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLE 1804

Query: 3074 VSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 2946
             S+AY L ERL++ L+ E Q+ YHQ   RF V +   L+   R
Sbjct: 1805 FSFAYKLGERLFQYLEIE-QLNYHQVLARFFVKNSHLLRGSAR 1846



 Score =  117 bits (292), Expect = 1e-22
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 13/281 (4%)
 Frame = -1

Query: 8423 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 8244
            N ++ N ++  RD  RY ++           S                 ++F HDEIH+W
Sbjct: 120  NYDIFNRLVTSRDKSRYGDLTQPTRVGGPKGS-----------------NYFIHDEIHYW 162

Query: 8243 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 8064
            S+  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I +  L + PDG  SE 
Sbjct: 163  SRTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES 222

Query: 8063 YEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPGR-LHTESTFF 7911
            Y Q     +L       FKNK   DG  K +++    +  +HH+F I P   L  +    
Sbjct: 223  YTQSIENGYLLSTNCISFKNK---DGLRKQYSVTLVYTLGSHHVFHIFPNMGLIEDEIRR 279

Query: 7910 FNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDD 7734
            F  +D+ D+  +FK   +     FP++     K++ Y+  LKKPD +S +AKLRQ+   +
Sbjct: 280  FGPYDLFDVGTLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQLCDAE 337

Query: 7733 VEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 7620
            + I+     ++  KR IE+G        F   L +H F K+
Sbjct: 338  ISIEAVFLIQEFAKR-IEKGGILSWSCSFFDYLKDHFFDKI 377


>ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
            gi|57639322|gb|AAW55581.1| 216 kDa protein [Apricot
            pseudo-chlorotic leaf spot virus]
          Length = 1892

 Score =  653 bits (1685), Expect = 0.0
 Identities = 427/1186 (36%), Positives = 636/1186 (53%), Gaps = 52/1186 (4%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG--DYNAALVQFYDEGSD 6141
            KG++  +      + Y HN + YP       + E I     D   D+NA+L+Q Y++GS 
Sbjct: 707  KGKKGGYFVLDYPMVYFHNNVSYPSFEATMKIKECILKARRDWNIDFNASLIQIYEKGSI 766

Query: 6140 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 5961
            +G H+DNE+ Y DD +LT+N+ G A FS+     V  +E+ + + L+MP G QK+ +H V
Sbjct: 767  IGMHKDNEECYDDDGVLTLNVKGNATFSVSCHDNV--IELKEGNELLMPPGYQKKFKHGV 824

Query: 5960 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 5787
             + +  RIS+T R H RD S  S +  I+   D      C+I ++A  ++ D  ++   +
Sbjct: 825  KSESEGRISVTLRVHKRDFSFRSKVGFIKGKYD------CMISSLASLIRKDQDEMCAFV 878

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
             +       N    + G ++ D  ++  A +  + V  D   I V S G  L ++  R  
Sbjct: 879  PNV-----LNRCISNKGCSIDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNLRGN 933

Query: 5609 HYTLL-REFTNLPRSSFSHAQKKG---NVNVIKGLIEHISKVE-HYNAIQFNAEAEKFLK 5445
            H++++    +NL   + S + K     N +V     +    VE  Y   +   +  + +K
Sbjct: 934  HFSVVSSRRSNLDSLANSKSDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLLRAVK 993

Query: 5444 LRKSFLQRTTGIL--------------------------LGEVLDNGGKFFKEAHDLAIE 5343
            L KS  +  TGI+                          + + LD+    +KE  +L  E
Sbjct: 994  LLKSLNEGMTGIVSHNAAHEGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKERSNLIKE 1053

Query: 5342 TKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 5169
               ++   + + GFAGSGKS  +Q+ +    KG+   +VVCPR  L  DW  K G + +D
Sbjct: 1054 LNFINKTVYGVFGFAGSGKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEK-GVDSKD 1112

Query: 5168 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDW--LTFELTQMKSCAEVVLIFDPLQ 4995
               + TFE+ +K +    ++ I DE++L P GY+D   L   +  +   + ++ + DPLQ
Sbjct: 1113 ---IKTFESALKMDIKGKNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGDPLQ 1169

Query: 4994 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGK- 4818
            A Y +  D +IL  E ++  L  +  + Y + S+R+NK F A       M      D + 
Sbjct: 1170 ASYFSAKDDNILSKESEIKRLF-KDGVNYKWYSYRINK-FIASKLGVCGMNEFIGIDNQS 1227

Query: 4817 IWLVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSE 4638
            +     P +       K  P+V+LV S +EK +Y      +TFGE+QGLTF    IVLSE
Sbjct: 1228 VTYKDMPSAFHFMDSAKNHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIVLSE 1287

Query: 4637 STAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRM 4458
                 ++    VA+TR ++   F +   GG +D L + K  L +  +     ++  +  M
Sbjct: 1288 EAKLCSDAHIMVAITRFRKGFCFVLGSKGGKEDNLRTLKGGLLQRIVSNLGASREFITNM 1347

Query: 4457 TRANLVFED--MEFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP--- 4305
            +   L   +   + G GIDEMDREERL GD +LK  I+LG+R +     G+VV++E    
Sbjct: 1348 SSVPLKLSEKVTKKGAGIDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVELEDSAI 1407

Query: 4304 ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTT 4125
            +C  P C       E           I+ +E RE++     ++Q          R     
Sbjct: 1408 KCHIPVCSVQTLGPE--------LGRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKV 1459

Query: 4124 VGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFK 3945
               M  +AIYP+H   DD+TF  A+KKRL F    EN ++   +   G  L   F    +
Sbjct: 1460 NQAMSHEAIYPRHRMDDDLTFLAAIKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQ 1519

Query: 3944 IDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3765
            I    +Q LL+ CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+
Sbjct: 1520 IKSGRNQSLLDLCRQEFEETKLSKSSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKR 1579

Query: 3764 FCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFM 3585
            F +AKAGQTLACFQH ILV+F+PWCRY E  +   LP+  Y+H  +NF +L ++ K+   
Sbjct: 1580 FTEAKAGQTLACFQHEILVKFSPWCRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFSN 1639

Query: 3584 RDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRF 3405
              +CVESDY AFD  QD  IL+FE+  ++  G+ +++I++Y+ +KC LGC+LG FA+MRF
Sbjct: 1640 GSVCVESDYTAFDVSQDHTILAFEVEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIMRF 1699

Query: 3404 TGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKA 3225
            TGEF TFLFNTLAN+AFT CRY+   G PI FAGDDMCAL ++    + E I EK+SLKA
Sbjct: 1700 TGEFSTFLFNTLANMAFTFCRYQVPSGTPICFAGDDMCALRDIKEIPNHEHILEKLSLKA 1759

Query: 3224 KVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSER 3045
            KV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE  ++ME +++Y +E S+AY L ER
Sbjct: 1760 KVNRTKVPMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMEVIDSYFLEFSFAYKLGER 1819

Query: 3044 LYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 2913
            LY  L+ E Q+ YHQ   RF +   HL + ++K  +      S+ED
Sbjct: 1820 LYSYLEIE-QLNYHQVLTRFFIKNKHLLRGESKANISELIWLSDED 1864



 Score =  129 bits (325), Expect = 2e-26
 Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
 Frame = -1

Query: 8423 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 8244
            N +++N ++  +D  RY   V                  GC K    + + F HDEIH+W
Sbjct: 120  NYDIINRLVVSKDKARYGPSVSPERV-------------GCPK----NSNLFIHDEIHYW 162

Query: 8243 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 8064
            +K  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I    L + PDGV SE 
Sbjct: 163  NKGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLPDGVRSES 222

Query: 8063 YEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVP-GRLHTESTFFFN 7905
            Y QP  N + L  N   V+  KT    R+      S  +HHLF I P   L  E T  F 
Sbjct: 223  YSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIPEETRRFG 282

Query: 7904 DFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVE 7728
             +D+ D+  +F    +     FP++     K++ YL  LKKPD +S +AKLRQ+   DV 
Sbjct: 283  PYDLFDVGALFVKPVRVPIQDFPLS--TFKKIFIYLSSLKKPDEQSAVAKLRQLCDSDVS 340

Query: 7727 IKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLP 7605
            I+     ++  +R+ + G     +  +  EH+  +  + LP
Sbjct: 341  IESVFLIQEFAQRVEKDGIQ--RWSCSFWEHIKDRFFDALP 379


>gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus]
          Length = 1878

 Score =  649 bits (1675), Expect = 0.0
 Identities = 434/1193 (36%), Positives = 630/1193 (52%), Gaps = 61/1193 (5%)
 Frame = -1

Query: 6308 RRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSDLG 6135
            RR+A+      + Y H+ + YP       + + II   D  G D+N+ALVQ Y++G  L 
Sbjct: 698  RRAAYFCLDFPMVYFHDKVSYPTFEATGPIRQAIINAKDKWGIDFNSALVQVYEDGCSLP 757

Query: 6134 YHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVHA 5955
             HRD+E+ Y DD ILT+N+ G AKF       +  +++   + ++MP G QK+ +H V  
Sbjct: 758  LHRDDEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQV 815

Query: 5954 YTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALES 5781
             +  R+S+T R H RD S  S +  ++   D      CL  +VAE +   P +V   +  
Sbjct: 816  MSEGRVSVTVRVHKRDFSFESKVRFVKGRLD------CLFSSVAEVIHKSPEEVMAFVPH 869

Query: 5780 FDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKGHY 5604
                  SN      G ++ D   + EA ++ LE   D   +   + G ++ ++  R  H+
Sbjct: 870  ILDRCISN-----RGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHF 924

Query: 5603 TLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAEKF 5451
             +     ++ RSS +            G+++H+    H          N+++     E+ 
Sbjct: 925  RV----ASVRRSSINSLANSSKEIKANGVLDHVMLHFHERLKEVEPDLNSVEVKVNLERA 980

Query: 5450 LKLRKSFLQRTTGI----------------------------LLGEVLDNGGKFFKEAHD 5355
             KL KS +   TGI                            + G+  D   +  ++   
Sbjct: 981  GKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRNFMKMIKGDTSDEKSEMLEKVQG 1040

Query: 5354 LAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGS 5181
            L    K V  ++    GFAGSGKS  +Q+ +    K +   ++VCPR  L  DW  K G 
Sbjct: 1041 LNFFKKKVYGIF----GFAGSGKSHAIQNLIYSEFKNSQGVLIVCPRKFLAKDWNEK-GV 1095

Query: 5180 EPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIF 5007
              RD   + TFE+ +K +     L ILDE++L P G+ D L  +L    +   + +V I 
Sbjct: 1096 NERD---IKTFESALKSDTKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKTSTIVCIG 1152

Query: 5006 DPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTAS 4827
            DPLQA Y    D   L  E ++  L  E  ++Y + S+R+NK F A+      M   T  
Sbjct: 1153 DPLQAGYFCPKDDGYLAKEGEITRLFKEG-IRYKWYSYRINK-FVAKKLGIETMNDFTGI 1210

Query: 4826 DGKIWLVSNPDSIRESFGD-KEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 4650
            D +  +  +  S      + K  P+V+LV S +EK +Y      +TFGE+QGLTFN   I
Sbjct: 1211 DQQSLIYKDMPSAHHFMKEGKNHPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGII 1270

Query: 4649 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4470
            VLSE     ++    VA+TR      F +   G  +D++ S KS L +        ++  
Sbjct: 1271 VLSEEAKLCSDAHIMVAITRFGRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASREF 1330

Query: 4469 LQRMTRANLVF--EDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEVVQIE 4308
            +   +   L+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++ 
Sbjct: 1331 ILSSSSVELILSEKDIAKGAGLDEMDRETRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLT 1390

Query: 4307 P---ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCD--SYNIRGP 4143
                +C  P C   + + E         + I+ +E RE++     ++QF +  S N + P
Sbjct: 1391 DSAIKCHIPMCSHQILMPE--------LEKIQAREYREFKGKNGWSNQFREEASSNWKFP 1442

Query: 4142 -RCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYN 3966
             R N      M F+A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L  
Sbjct: 1443 YRVNQA----MGFEAVYPRHRMDDDLTFLAAIKKRLRFDSIANNYAKFKAAESRGKYLAK 1498

Query: 3965 NFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQL 3786
             F +   I+   DQ LL++CR +FE  KL KS ATI  H+ RSD DW L+ +FLFMKSQL
Sbjct: 1499 IFLKHVPINCGRDQRLLDQCRQEFEETKLSKSAATIGVHAQRSDSDWPLDKIFLFMKSQL 1558

Query: 3785 CTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNR 3606
            CTKFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  
Sbjct: 1559 CTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELED 1618

Query: 3605 WVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLG 3426
            + K+      CVESDY AFD  QD  IL+FE+ L+K  G+ D ++ +Y+ +KC LGC+LG
Sbjct: 1619 FAKRFSNGSTCVESDYTAFDVSQDHTILAFEVELLKHFGWDDSILQSYIRMKCTLGCRLG 1678

Query: 3425 HFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIF 3246
             FA+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I 
Sbjct: 1679 GFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFIL 1738

Query: 3245 EKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSY 3066
             K+SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+
Sbjct: 1739 NKLSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSF 1798

Query: 3065 AYSLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 2913
            AY L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1799 AYKLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1850



 Score =  120 bits (302), Expect = 8e-24
 Identities = 85/272 (31%), Positives = 130/272 (47%), Gaps = 10/272 (3%)
 Frame = -1

Query: 8459 KEKKVQCIKSNP--NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILG 8286
            K  K++ + SN     ++LN ++  +D  RY  +                    C K   
Sbjct: 106  KMSKMERLGSNSVRTYDILNRLVTSKDKARYGPLATPER-------------SPCPK--- 149

Query: 8285 LHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR 8106
               + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEI  GY +S  P +Y F+I  
Sbjct: 150  -KTNIFIHDEIHYWSRAQLESFLAVHRPKNLWATLVFPPEIFAGYKSSVLPFLYQFEIHG 208

Query: 8105 DRLFFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIV 7944
              L + PDGV SE Y QP  N + L  +  LV   KT   +R+      S  +HHLF I 
Sbjct: 209  KDLVYMPDGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLIYSLGSHHLFHIF 268

Query: 7943 PGR-LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLES 7770
            P   L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S
Sbjct: 269  PTEDLLKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQS 326

Query: 7769 GLAKLRQIIGDDVEIKEFLFFEQLCKRLIERG 7674
             +AKLRQ+   D+ I+     ++   R+   G
Sbjct: 327  AVAKLRQLSDADISIESVFMVQEFASRIERNG 358


>ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi|75266362|gb|ABA18636.1|
            putative polyprotein [Peach mosaic virus]
          Length = 1886

 Score =  647 bits (1668), Expect = 0.0
 Identities = 428/1172 (36%), Positives = 635/1172 (54%), Gaps = 50/1172 (4%)
 Frame = -1

Query: 6311 GRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII--KICDPDGDYNAALVQFYDEGSDL 6138
            GRR+ ++     + Y HN + YP       + + I  K  D D  +NAALVQ Y +   +
Sbjct: 705  GRRAMYVCLDSAMVYFHNTISYPSIEAHGKIKDWILRKAKDYDVPFNAALVQVYRKDYTM 764

Query: 6137 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 5958
            G H+DNE  Y ++PILTVN  G A FS +    V  + + D   L+MP   Q++ RH V 
Sbjct: 765  GMHKDNEACYGEEPILTVNAFGSAVFSTDCCNNV--INLEDGDELLMPAKFQRKFRHGVK 822

Query: 5957 AYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 5787
            + +  R+SIT R H RD S       E       K  CL +AV++ +  KS+ + ++   
Sbjct: 823  SLSEGRVSITLRVHSRDFSFE-----EKRKFVNGKFDCLFDAVSKLISKKSEEVMIRNP- 876

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
               D+   +       G  L D   +    ++ +E   D   + V S G  L +   R  
Sbjct: 877  HILDRCIMNR------GCDLDDLRSICNNYEIKVECQGDCGLLEVGSIGMPLGRFMLRGN 930

Query: 5609 HYTLL-REFTNLPRSSFSHAQKKGNVN------VIKGLIEHISKVE-HYNAIQFNAEAEK 5454
            H++L  +  +NL   S +++ K  +V+      V    ++ +  +E   N+ +   +  +
Sbjct: 931  HFSLCSKRRSNL--DSLANSVKDVSVSSCGIDYVQMKFLDRLRAIEPDLNSTKVKVDIRR 988

Query: 5453 FLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNL---------------- 5322
              KL K  ++  TGI+      +G +  K   + A    +VS +                
Sbjct: 989  GGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLVSAMRGSSAGIEKNKLMEEL 1048

Query: 5321 ---------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 5175
                      H + GFAGSGKS  +QD + K  +G+   +VVCPR  L  DW  K G + 
Sbjct: 1049 EELNFQQVSIHGIFGFAGSGKSHAIQDLISKEFRGSQGLMVVCPRKFLAKDWSEK-GVDD 1107

Query: 5174 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAE--VVLIFDP 5001
            +D   + TFE+ +K +     + ILDE+TL P G+ D L  ++    +  +  +V + DP
Sbjct: 1108 QD---IKTFESALKSDLKGKRVFILDEVTLLPRGFTDLLMMKIHMEGNLKKSTIVCLGDP 1164

Query: 5000 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 4821
            LQA Y ++ D   L+ E +V  L  E  ++Y + S+R+N+ F A+             D 
Sbjct: 1165 LQASYFSQKDESYLEREPEVKRLFPEG-VEYKWFSYRINR-FVARQLSITTRNEFPGIDN 1222

Query: 4820 KIWLVSN-PDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4644
            +  +  + P +I        + +V+LV S +EK +Y    +T+TFGE+QGLTF    IVL
Sbjct: 1223 QSQVYGDVPSAIHSIQKSGVKVEVILVASMIEKELYCNLCQTMTFGESQGLTFGVGIIVL 1282

Query: 4643 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4464
            SE     ++    VA+TR     S+ +   G  ++++   K+ L          +K  + 
Sbjct: 1283 SEEAKLCSDAHIMVAVTRFNRGFSYALGSKGTKEEYMRGIKNGLLSRLCSSIGASKDFIL 1342

Query: 4463 RMTRANLVFED--MEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4290
              +   L F +  ++ G G+DEMDREERLSGDP+LK  I+LG+R +  E +    + E+ 
Sbjct: 1343 SSSPIPLNFSEKMIQKGAGLDEMDREERLSGDPWLKTQIFLGKRFHLREPLGQVCQIEDS 1402

Query: 4289 RCQTHLFISEPNFAQCYNFDLIRLK--EEREYREDMLVTDQFCDSYNIRGPRCNDT--TV 4122
              + H+ +S     Q    +L R+K  E+RE++     ++QF +     GP         
Sbjct: 1403 AIKCHVPLSNQ---QTLYVELSRMKAREDREFKGRDGWSNQFREE---AGPNWKFPYKVA 1456

Query: 4121 GPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKI 3942
             PM F+AIYP+H   DD+TF+ A+KKRL F     N ++   +   G  L   F +   +
Sbjct: 1457 QPMNFEAIYPRHRMDDDITFYAAIKKRLRFDSVANNYTKFKQSQSRGQYLLQVFLKHVDL 1516

Query: 3941 DFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3762
                +Q LL +C+ +FE  KL KS ATI +H+ RSD DW L+ +FLFMKSQLCTKFEK+F
Sbjct: 1517 KPSRNQALLNQCKQEFEETKLSKSAATIGAHAQRSDPDWPLDRIFLFMKSQLCTKFEKRF 1576

Query: 3761 CDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMR 3582
             DAKAGQTLACFQH ILV+F+PWCRY+E  +   LPE  YIH  +NF +L  + K++   
Sbjct: 1577 EDAKAGQTLACFQHKILVEFSPWCRYVEKILTSCLPENFYIHQRKNFSELEAFAKRYSDG 1636

Query: 3581 DICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFT 3402
             +CVESDY AFD  QD  IL+FE+ L++  G+ + V+++Y+ +KC LGC+LG FA+MRFT
Sbjct: 1637 SVCVESDYTAFDVSQDHTILAFEVELLRYIGWDEAVLNSYIKMKCTLGCRLGGFAIMRFT 1696

Query: 3401 GEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAK 3222
            GEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E I  K+SLKAK
Sbjct: 1697 GEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREIASHEHILNKLSLKAK 1756

Query: 3221 VERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 3042
            V RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E S+AY L ERL
Sbjct: 1757 VNRTNVPMFCGWRLCQDGLIKEPCLIYERLNVAIENGRLLDVIDSYYLEFSFAYKLGERL 1816

Query: 3041 YEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 2946
            ++ L+ E Q+ YHQ   RF V +   L+   R
Sbjct: 1817 FQYLEIE-QLNYHQVLTRFFVKNSHLLRGGAR 1847



 Score =  121 bits (303), Expect = 6e-24
 Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
 Frame = -1

Query: 8423 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 8244
            N +++N ++  RD  RY +           L+E  +   G K       ++F HDEIH+W
Sbjct: 120  NYDIINRLVTSRDKSRYGD-----------LTEPSRVG-GPKST-----NYFIHDEIHYW 162

Query: 8243 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 8064
            ++K +  FL    P+ L  ++V+PPEIL GY NS  P +Y F+I  D + F PDGV SE 
Sbjct: 163  TRKQLETFLELKSPKNLWVTMVFPPEILKGYKNSVLPFLYKFEIEGDNMVFMPDGVRSES 222

Query: 8063 YEQPANLFWLFKNKYL--VDGDKTWTIVRHTSKY---AHHLFEIVPGRLHT--ESTFFFN 7905
            Y QP    +L     +   D +K       T  Y   +HH+F I P +L T  +    F 
Sbjct: 223  YTQPIENGYLLSTNCISFTDSNKRKRQYSVTLVYTLGSHHVFHIFP-KLGTMEDEVRRFG 281

Query: 7904 DFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVE 7728
             +D+ D+  +FK   +     FP++     K++ YL  LKKPD +S +AKLRQ+  +++ 
Sbjct: 282  PYDLFDVGVLFKQPVRVPIQDFPLS--TFKKIFIYLSSLKKPDEQSAVAKLRQLCDNEIS 339

Query: 7727 IKEFLFFEQLCKRLIERG 7674
             +     ++  +R +E+G
Sbjct: 340  FEAVALIQEFARR-VEKG 356


>sp|P54891.1|RDRP_ACLSA RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
            protein; AltName: Full=ORF1 protein; AltName: Full=RNA
            replicase gi|453240|dbj|BAA03641.1| 216.5K protein [Apple
            chlorotic leaf spot virus]
          Length = 1885

 Score =  641 bits (1654), Expect = e-180
 Identities = 432/1191 (36%), Positives = 625/1191 (52%), Gaps = 57/1191 (4%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII-KICDPDG-DYNAALVQFYDEGSD 6141
            K R++A+      + Y H+ + YP       + +II +  D  G ++N+AL+Q Y++G  
Sbjct: 703  KNRKAAYFCIDYPMVYFHDKISYPTFEATGEIKQIIMRARDKWGANFNSALIQVYNDGCR 762

Query: 6140 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 5961
            L  H DNE+ Y DD ILT+N+ G AKF     G + D+   D   ++MP G QK  +H V
Sbjct: 763  LPLHSDNEECYDDDEILTINVVGDAKFHTTCHGEIIDLRQGDE--ILMPGGYQKMNKHAV 820

Query: 5960 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 5787
               +  R S+T R H RD S  S +  I+   D      CL  ++AE +   P +V   +
Sbjct: 821  EVASEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSIAEIIHKKPEEVMMFI 874

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 875  PHIVDRCVSN-----RGCSLDDARAICEKYEIKIECEGDCGLVECGTIGLSVGRMLLRGN 929

Query: 5609 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAE 5457
            H+T+     ++ RSS              G+++H+    H             +   ++ 
Sbjct: 930  HFTV----ASVRRSSMDSLANSSKELKSNGVLDHVMFNFHKRLRSVEPDLTVEEIKVDSS 985

Query: 5456 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 5349
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 986  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMIKGKSEETRGDLFDRV 1045

Query: 5348 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 5175
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1046 QELNFMKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGVMVICPRRFLAKDWSEK-GVDE 1104

Query: 5174 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 5001
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1105 KD---IKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDP 1161

Query: 5000 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 4821
            LQA Y    D + L  E ++  L  +  + Y + S+R+NK F A+      M      D 
Sbjct: 1162 LQAGYFCPKDDNYLSREGEIKRLFKDG-VNYKWYSYRINK-FIAKKLAIETMNDFIGIDE 1219

Query: 4820 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4644
            +  +  +  S      +K    +V+LV S +EK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1220 QNLIYKDMPSAHHFMENKGNHIEVILVPSMIEKELYSNYGNVMTFGESQGLTFNCGVIVL 1279

Query: 4643 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4464
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1280 SEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFIL 1339

Query: 4463 RMTRANLVF--EDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP- 4305
              +   L+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++   
Sbjct: 1340 GSSSVKLILSEKDVSKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIVEPLGQVIKLTEN 1399

Query: 4304 --ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4140
              +C  P C +     E         D I+ +E RE++     ++QF +    N + P R
Sbjct: 1400 AIKCHIPVCSSQTLGPE--------LDNIQAREFREFKGKNGWSNQFREEAGPNWKHPYR 1451

Query: 4139 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 3960
             N      M ++AIYP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1452 VNQA----MSYEAIYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKVF 1507

Query: 3959 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 3780
             R   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1508 LRHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1567

Query: 3779 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 3600
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1568 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFA 1627

Query: 3599 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 3420
            K+     +CVESDY AFD  QD  IL+FE+ L+K  G+ D+V+ +Y+ +KC LGC+LG F
Sbjct: 1628 KRFSNGSMCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGF 1687

Query: 3419 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 3240
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1688 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHECILSK 1747

Query: 3239 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 3060
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1748 LSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1807

Query: 3059 SLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 2913
             L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1808 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1857



 Score =  122 bits (306), Expect = 3e-24
 Identities = 87/272 (31%), Positives = 133/272 (48%), Gaps = 10/272 (3%)
 Frame = -1

Query: 8459 KEKKVQCIKSNP--NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILG 8286
            K  K++ + SN     ++LN ++  +D  RY             L+   +    C K   
Sbjct: 106  KMSKMERLGSNSVKTYDILNRLVTAKDKARY-----------GPLARPERSP--CPK--- 149

Query: 8285 LHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR 8106
               + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I  
Sbjct: 150  -KTNIFIHDEIHYWSRDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHG 208

Query: 8105 DRLFFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIV 7944
              L + PDGV SE Y QP  N F L  +  LV    T   +R+      S  +HHLF I 
Sbjct: 209  KDLVYMPDGVRSESYTQPLENGFLLSSSSILVRNKATGVEIRYQVSLVYSLGSHHLFHIY 268

Query: 7943 PGR-LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLES 7770
            P   L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S
Sbjct: 269  PTEDLMKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQS 326

Query: 7769 GLAKLRQIIGDDVEIKEFLFFEQLCKRLIERG 7674
             +AKLRQ+   D+ I+     ++   R+ + G
Sbjct: 327  AVAKLRQLSDADISIESVFMVQEFASRVEKNG 358


>dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]
          Length = 1877

 Score =  638 bits (1646), Expect = e-179
 Identities = 428/1189 (35%), Positives = 628/1189 (52%), Gaps = 57/1189 (4%)
 Frame = -1

Query: 6308 RRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSDLG 6135
            R++A+      + Y H+ + YP       + + II   +  G D+N+ALVQ Y++G +L 
Sbjct: 697  RKAAYFCLDFPLVYFHDKVSYPTFEATGPIKQAIINAKNKWGIDFNSALVQVYEDGCNLP 756

Query: 6134 YHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVHA 5955
             H+DNE+ Y DD ILT+N+ G AKF       +  +++   + ++MP G QK+ +H V  
Sbjct: 757  LHKDNEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQV 814

Query: 5954 YTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALES 5781
             +  R S+T R H RD S  S +  ++   D      CL  ++AE +   P +V   +  
Sbjct: 815  ISEGRTSVTMRVHKRDFSFESKVKFVKGRLD------CLFSSIAEVIHKKPEEVMAFVPH 868

Query: 5780 FDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKGHY 5604
                  SN      G ++ D   + EA ++ +E   D   +   S G ++ ++  R  H+
Sbjct: 869  ILDRCISN-----KGCSIDDARAICEAYEIKIECEGDCGLVECGSVGLSVGRLLLRGNHF 923

Query: 5603 TLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAEKF 5451
             +     ++ RSS              G+++H+    H          N+++     E+ 
Sbjct: 924  RV----ASVRRSSIDSLANSSKEIKANGVLDHVMFNFHDRLKAVEPDLNSVEVKVNLERA 979

Query: 5450 LKLRKSFLQRTTGILLGEVLDNGGKFFKEAH--------------DLAIETKVVSNLYHC 5313
             KL KS +   TGI+       G +  K  +              D + E   VS     
Sbjct: 980  GKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMKMIKDDDSNEKNEVSEKLQG 1039

Query: 5312 LT----------GFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 5169
            L           GFAGSGKS  +Q+ +    K +   +VVCPR  L  DW  K G   +D
Sbjct: 1040 LNFFKKKIYGIFGFAGSGKSHAIQNLIHSEFKNSQGILVVCPRKFLAKDWSEK-GVNEKD 1098

Query: 5168 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDPLQ 4995
               + TFE+ +K +     L ILDE++L P G+ D L  +L    +   + +V I DPLQ
Sbjct: 1099 ---IKTFESALKSDIKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKVSTIVCIGDPLQ 1155

Query: 4994 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKI 4815
            A Y    D   L  + ++  L  E  +KY + S+R+N+ F A+      M   T  D + 
Sbjct: 1156 AGYFCPKDDGYLSKDGEITRLFKE-GVKYKWYSYRINR-FMAKKLGISTMNDFTGIDQQS 1213

Query: 4814 WLVSNPDSIRESFGD-KEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSE 4638
             +  +  S +    +    P+V+LV S +EK +Y      +TFGE+QGLTFN   IVLSE
Sbjct: 1214 LIYKDMPSAQHFLREGNNHPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGVIVLSE 1273

Query: 4637 STAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRM 4458
                 ++    VA+TR +    F +   G  +D++ S KS L +        +K  +   
Sbjct: 1274 EAKLCSDAHVMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILNS 1333

Query: 4457 TRANLVF--EDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP--- 4305
            +   LV   +D+  G GIDEMDRE RL GD +LK  IYLG+R +     G+V+++     
Sbjct: 1334 SSVKLVLSEKDVAKGAGIDEMDREVRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTESAI 1393

Query: 4304 ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-RCN 4134
            +C  P C     + E         + I+ +E RE++     ++QF +    N + P + N
Sbjct: 1394 KCHIPVCSHQTLMPE--------LEKIQAREYREFKGRDGWSNQFREEAGPNWKFPYKVN 1445

Query: 4133 DTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKR 3954
                  M F+A+YP+H   DD+TF  A+KKRL F     N ++L  +   G  L   F +
Sbjct: 1446 QA----MNFEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKLKASENRGKYLAKVFLK 1501

Query: 3953 CFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKF 3774
               I    DQ LL++CR +FE  KL KS ATI +H+ RSD DW L+ +FLFMKSQLCTKF
Sbjct: 1502 HVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKF 1561

Query: 3773 EKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKK 3594
            EK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + ++
Sbjct: 1562 EKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARR 1621

Query: 3593 HFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAV 3414
                 +CVESDY AFD  QD  IL+FE+ L++  G+ + ++ +Y+ +KC LGC+LG FA+
Sbjct: 1622 FSNGSMCVESDYTAFDVSQDHTILAFEVELLRHFGWDENILQSYIRMKCTLGCRLGGFAI 1681

Query: 3413 MRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKIS 3234
            MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL        I  K+S
Sbjct: 1682 MRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHNFILSKLS 1741

Query: 3233 LKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSL 3054
            LKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY L
Sbjct: 1742 LKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKL 1801

Query: 3053 SERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 2913
             ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1802 GERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1849



 Score =  121 bits (303), Expect = 6e-24
 Identities = 75/209 (35%), Positives = 112/209 (53%), Gaps = 8/209 (3%)
 Frame = -1

Query: 8276 SFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRL 8097
            + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I    L
Sbjct: 152  NIFIHDEIHYWSRTQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDL 211

Query: 8096 FFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR 7935
             + PDGV SE Y QP  N + L  +  LV   KT   +R+      S  +HHLF I P  
Sbjct: 212  VYMPDGVRSESYTQPLENGYLLSSSSILVHNKKTGVELRYQVSLVYSLGSHHLFHIFPTE 271

Query: 7934 -LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLA 7761
             L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S +A
Sbjct: 272  DLLKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVA 329

Query: 7760 KLRQIIGDDVEIKEFLFFEQLCKRLIERG 7674
            KLRQ+   D+ I+     ++   R+ + G
Sbjct: 330  KLRQLSDADISIESVFMVQEFASRIEKNG 358


>ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus]
            gi|137259|sp|P27738.1|RDRP_ACLSP RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
            protein; AltName: Full=ORF1 protein; AltName: Full=RNA
            replicase gi|210294|gb|AAA42587.1| putative [Apple
            chlorotic leaf spot virus]
          Length = 1884

 Score =  635 bits (1637), Expect = e-178
 Identities = 427/1191 (35%), Positives = 624/1191 (52%), Gaps = 57/1191 (4%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII-KICDPDG-DYNAALVQFYDEGSD 6141
            +G+++A+      + Y H+ + YP       +  ++ K     G D+N+AL+Q Y++G  
Sbjct: 702  RGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIRHVMMKARSKWGIDFNSALIQVYNDGCR 761

Query: 6140 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 5961
            L  H DNE+ Y DD ILT+N+ G AKF       V  +++   + ++MP G QK+ RH V
Sbjct: 762  LPLHSDNEECYDDDGILTINVVGDAKFHTTCHDEV--IDLKQGNEILMPAGYQKKNRHAV 819

Query: 5960 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 5787
               +  R S+T R H RD S  S +  I+   D      CL  +VAE +   P ++   +
Sbjct: 820  EVASEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSVAEIIHKKPEEIMMFI 873

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 874  PHIMDRCVSN-----RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGN 928

Query: 5609 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNA---------IQFNAEAE 5457
            H+++     ++ RSS              G+++H++   H                 ++ 
Sbjct: 929  HFSV----ASVRRSSMDSLANSSKEIKSDGVLDHVTFNFHKRLKLVEPDLTNADIKVDSS 984

Query: 5456 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 5349
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 985  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMNMVRGQIEEPKSDLFDKV 1044

Query: 5348 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 5175
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1045 QELNFMKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGIMVICPRRFLAKDWSEK-GVDE 1103

Query: 5174 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 5001
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1104 KD---IKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDP 1160

Query: 5000 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 4821
            LQA Y    D + L  E ++  L  +  + Y + S+R+NK F A+      M      D 
Sbjct: 1161 LQAGYFCPKDDNYLSREGEIKRLF-KGGVNYKWYSYRINK-FIAKKLAIETMNDFIGIDE 1218

Query: 4820 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4644
            +  +  +  S       K    +V+LV S VEK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1219 QSSIYKDMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVL 1278

Query: 4643 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4464
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1279 SEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASKEFIL 1338

Query: 4463 RMTRANLVF--EDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEVVQIEPE 4302
              +  NL+   +D+  G GIDEMDRE RL GD +LK  IYLG+R +     G+V+++  +
Sbjct: 1339 GSSSVNLILSEKDIAKGAGIDEMDREARLEGDVWLKSMIYLGKRYHMVEPLGQVIKLTDD 1398

Query: 4301 ---CEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4140
               C  P C +     E         D I+ +E RE++     ++QF +    N + P +
Sbjct: 1399 AIKCHIPVCSSQTLGPE--------LDNIQAREYREFKGKNGWSNQFREEAGPNWKFPYK 1450

Query: 4139 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 3960
             N      M ++A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1451 VNQA----MSYEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLTKIF 1506

Query: 3959 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 3780
             +   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1507 LKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1566

Query: 3779 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 3600
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1567 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFA 1626

Query: 3599 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 3420
            ++     ICVESDY AFD  QD  IL+FE+ L++  G+ D V+ +Y+ +KC LGC+LG F
Sbjct: 1627 RRFSNGSICVESDYTAFDVSQDHTILAFEVELLRHFGWDDRVLQSYIKMKCTLGCRLGGF 1686

Query: 3419 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 3240
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1687 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILSK 1746

Query: 3239 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 3060
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1747 LSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1806

Query: 3059 SLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 2913
             L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1807 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1856



 Score =  120 bits (302), Expect = 8e-24
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 8/256 (3%)
 Frame = -1

Query: 8417 EVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSK 8238
            ++LN ++  +D  RY             L++  +    C K      + F HDEIH+WS+
Sbjct: 122  DILNRLVTAKDKARY-----------GPLAKPERSP--CPK----KTNIFIHDEIHYWSR 164

Query: 8237 KSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYE 8058
              +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I    L + PDGV SE Y 
Sbjct: 165  DQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSESYT 224

Query: 8057 QP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR-LHTESTFFFNDF 7899
            QP  N F L  +  ++    T   +R+      S  +HHLF I P   L  E    F  +
Sbjct: 225  QPLENGFLLSSSSIIIKNRVTGVEIRYQVSLVYSLGSHHLFHIYPAEDLMKEEVRRFGPY 284

Query: 7898 DVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIK 7722
            D+ D+  +F    +     FP++     K++ Y+  LKKPD++S +AKLRQ+   D+ I+
Sbjct: 285  DLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQLSDADISIE 342

Query: 7721 EFLFFEQLCKRLIERG 7674
                 ++   R+ + G
Sbjct: 343  SVFMIQEFASRIEKNG 358


>gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus]
          Length = 1883

 Score =  634 bits (1636), Expect = e-178
 Identities = 425/1191 (35%), Positives = 621/1191 (52%), Gaps = 57/1191 (4%)
 Frame = -1

Query: 6314 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG--DYNAALVQFYDEGSD 6141
            KG+++A+      + Y H+ + YP       + +++         ++N+ALVQ Y +G  
Sbjct: 701  KGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKQVMMRAKEKWGINFNSALVQVYSDGCR 760

Query: 6140 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 5961
            L  H DNE+ Y DD ILT+N+ G AKF       + D++  +   ++MP G QK+ +H V
Sbjct: 761  LPLHSDNEECYDDDGILTINIKGDAKFHTTCHDEITDLKQGNE--ILMPAGYQKKNKHAV 818

Query: 5960 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 5787
               +  R S+T R H RD S  S +  I+   D      CL  ++AE +   P +V   +
Sbjct: 819  EVNSEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSIAEIIHKKPEEVMMFI 872

Query: 5786 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 5610
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 873  PHIMDRCISN-----RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGN 927

Query: 5609 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAE 5457
            H+++     ++ RSS              G+++H++   H            +    ++ 
Sbjct: 928  HFSV----ASVRRSSMDSLANSSKEIKSNGVLDHVTFNFHKRLKLVEPDLTIVDVKVDSS 983

Query: 5456 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 5349
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 984  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMVRGQSEEIKGDLFDKV 1043

Query: 5348 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 5175
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1044 QELNFMKVRIYGIFGFAGSGKSHAIQNLIQSEFKGSQGVMVICPRRFLAKDWNEK-GVDE 1102

Query: 5174 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 5001
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1103 KD---IKTFESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILRKSTIVCIGDP 1159

Query: 5000 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 4821
            LQA Y    D + L  E ++  L  E  + Y + S+R+NK F A+      M      D 
Sbjct: 1160 LQAGYFCPKDDNYLSREGEIKRLFKEG-VNYKWYSYRINK-FVAKKLAIETMNDFIGIDE 1217

Query: 4820 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 4644
            +  +  +  S       K    +V+LV S VEK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1218 QSSIYKDMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVL 1277

Query: 4643 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4464
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1278 SEEAKLCSDAHIMVAVTRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFIL 1337

Query: 4463 RMTRANLVF--EDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP- 4305
              +  NL+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++   
Sbjct: 1338 GSSSVNLILSEKDITKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIIEPLGQVIKLTDG 1397

Query: 4304 --ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4140
              +C  P C +     E         D I+ +E RE++     ++QF +    N + P R
Sbjct: 1398 AIKCHIPVCSSQTLGPE--------LDRIQAREFREFKGKNGWSNQFREEAGPNWKFPYR 1449

Query: 4139 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 3960
             N      M ++A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1450 VNQA----MSYEAVYPRHKMDDDLTFLAAIKKRLRFDNAANNYAKFKAAESRGKYLAKVF 1505

Query: 3959 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 3780
             +   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1506 LKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1565

Query: 3779 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 3600
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1566 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFA 1625

Query: 3599 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 3420
            ++      CVESDY AFD  QD  IL+FE+ L+K  G+ D+++ +Y+ +KC LGC+LG F
Sbjct: 1626 RRFSNGSTCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKILQSYIKMKCTLGCRLGGF 1685

Query: 3419 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 3240
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1686 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILNK 1745

Query: 3239 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 3060
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1746 LSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1805

Query: 3059 SLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQS--SEED 2913
             L ERLY  L+ E Q+ YHQ   RF + +   L+   R    E    S+ED
Sbjct: 1806 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHSISELEWLSDED 1855



 Score =  120 bits (301), Expect = 1e-23
 Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 10/272 (3%)
 Frame = -1

Query: 8459 KEKKVQCIKSNP--NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILG 8286
            K  K++ + SN     ++LN ++  +D  RY             L++  +    C K   
Sbjct: 106  KMSKMERLGSNSVKTYDILNRLVTAKDKARY-----------GPLAKPERSP--CPK--- 149

Query: 8285 LHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR 8106
               + F HDEIH+WS+  +  FL  ++P+ L  ++V PPEIL GY +S  P +Y F+I  
Sbjct: 150  -KTNVFIHDEIHYWSRDQLETFLQIYKPKNLWATLVSPPEILAGYKSSVLPFLYQFEIHG 208

Query: 8105 DRLFFFPDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTI-VRHT-----SKYAHHLFEIV 7944
              L + PDGV SE Y QP    +L  +  ++  D+T  + VR+      S  +HHLF I 
Sbjct: 209  KDLVYMPDGVRSESYTQPLENGYLLSSSSILVKDRTTGVEVRYQVSLTYSLGSHHLFHIY 268

Query: 7943 P-GRLHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLES 7770
            P   L  E    F  +D+ D+  +F    +     FP++     K++ Y+  LKKPD++S
Sbjct: 269  PTENLMKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQS 326

Query: 7769 GLAKLRQIIGDDVEIKEFLFFEQLCKRLIERG 7674
             +AKLRQ+   D+ I+     ++   R+ + G
Sbjct: 327  AVAKLRQLSDADISIESIFMVQEFASRIEKDG 358