BLASTX nr result
ID: Rehmannia24_contig00000028
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00000028
(1816 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 937 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 928 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 928 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 927 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 925 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 925 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 924 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 924 0.0
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 919 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 860 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 709 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 443 e-121
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 419 e-114
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 404 e-110
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 401 e-109
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 400 e-108
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 399 e-108
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 398 e-108
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 395 e-107
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 392 e-106
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 937 bits (2421), Expect = 0.0
Identities = 464/604 (76%), Positives = 502/604 (83%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ+P+AADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQSPDAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLT+GHL APNQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFL
Sbjct: 222 LEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNTRLRGPPGF +PFT+P PVNPDDA+T +FREF + + LE S
Sbjct: 402 EFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENS 461
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
E+ +HTSLKV LS EQL ALHELGN+R GGP+LPK
Sbjct: 462 TESDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPK---------------RSSNH 506
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
T S+ L + H P P + K +GFEALEIQTDPSTG+ IMPI D
Sbjct: 507 THTSSDLLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDT 562
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A + HW+ P K++ T R LNRFPTPW PDR+RA +FTS NS T K+LH
Sbjct: 563 RELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRE 622
Query: 1803 TQTW 1814
+QTW
Sbjct: 623 SQTW 626
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 928 bits (2399), Expect = 0.0
Identities = 465/609 (76%), Positives = 496/609 (81%), Gaps = 5/609 (0%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F +LE
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
AE H SL + L QL ALHELGNTR GGPLLPK
Sbjct: 457 AETPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK-------GPAKLTTVEPCPD 509
Query: 1443 TQASASLN-----QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIM 1607
A S N + T + P DP TLPWVAWLPKLNALGFEALEIQTDPSTGE IM
Sbjct: 510 LPAENSANPEPPRKTTQTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIM 569
Query: 1608 PIADVRDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFK 1787
PI D R+LP+A HW P + ++++T R NR+PTPW PDRSRA +FTS NS T K
Sbjct: 570 PITDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGK 629
Query: 1788 SLHLYTQTW 1814
+LH +Q W
Sbjct: 630 ALHRESQVW 638
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 928 bits (2398), Expect = 0.0
Identities = 460/604 (76%), Positives = 496/604 (82%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEXTLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + + L QL ALHELGN R GGPLLPK
Sbjct: 457 SETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P + ++L+T RGLNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 927 bits (2397), Expect = 0.0
Identities = 460/604 (76%), Positives = 496/604 (82%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + + L QL ALHELGN R GGPLLPK
Sbjct: 457 SETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P + ++L+T RGLNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 925 bits (2391), Expect = 0.0
Identities = 459/604 (75%), Positives = 495/604 (81%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + + L QL ALHELGN R G PLLPK
Sbjct: 457 SETPDEHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P + ++L+T RGLNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 925 bits (2390), Expect = 0.0
Identities = 459/604 (75%), Positives = 495/604 (81%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + L QL ALHELGN R GGPLLPK
Sbjct: 457 SETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P ++++L+T R LNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 924 bits (2389), Expect = 0.0
Identities = 459/604 (75%), Positives = 494/604 (81%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + L QL ALHELGN R GGPLLPK
Sbjct: 457 SETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P + ++L+T R LNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 924 bits (2389), Expect = 0.0
Identities = 459/604 (75%), Positives = 494/604 (81%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
+E H SL + L QL ALHELGN R GGPLLPK
Sbjct: 457 SETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEP 514
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE IMPI D
Sbjct: 515 QAVPEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
R+LP+A HW P + ++L+T R LNR+PTPW PDR+RA +FTS NS T K+LH
Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634
Query: 1803 TQTW 1814
+Q W
Sbjct: 635 SQVW 638
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 919 bits (2374), Expect = 0.0
Identities = 457/605 (75%), Positives = 494/605 (81%), Gaps = 1/605 (0%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ+PEAADALE LGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQSPEAADALEVLGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTA
Sbjct: 102 LRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY Q
Sbjct: 162 LFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLTAP T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
Sbjct: 222 LEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 281
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY
Sbjct: 282 PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 341
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQPITL
Sbjct: 342 FEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITL 401
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR VNT LRGPPGF +PFT+P PVNPDDA+T +F+ F + +LE
Sbjct: 402 EFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-----CQAAAAVETTLEQQ 456
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
AE H SL++ LS QL ALH+LGN R GGPLLP+
Sbjct: 457 AETPDEHQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ---RPDTSTVVEPCPDLPPE 513
Query: 1443 TQASASLNQ-GDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIAD 1619
T A+ +Q P DP TLPWVAWLPKLNALGFEALEIQ DPSTG IMPI D
Sbjct: 514 THAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITD 573
Query: 1620 VRDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHL 1799
++LP+A HW P + ++++T R LNR+PTPW PDRSRA +FTS NS T K+LH
Sbjct: 574 TKELPRAIGPAHWQGPDMEQIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHR 633
Query: 1800 YTQTW 1814
+Q W
Sbjct: 634 ESQVW 638
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 860 bits (2221), Expect = 0.0
Identities = 431/604 (71%), Positives = 475/604 (78%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ+PEAADALEALGINSHPYAIT HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK
Sbjct: 42 AQSPEAADALEALGINSHPYAITSHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TA
Sbjct: 102 LRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTA 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFAHSP+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ
Sbjct: 162 LFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 220
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
LEWLTVGHLTAP PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFL
Sbjct: 221 LEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFL 280
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
PE YNCRTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEITLLVNY
Sbjct: 281 PENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNY 340
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
FEFTA+LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKALDWQPITL
Sbjct: 341 FEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITL 399
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EFPVR V T +RGPPGF NPFT+P PVNP+DAD F++F + LE S
Sbjct: 400 EFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEAS 459
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXX 1442
AE+ HT LKV + LS QL A+H LG++R GGPLLP++T
Sbjct: 460 AESPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTK 519
Query: 1443 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADV 1622
+QAS + + D P +P TLPWVAWLPKLNALGFEALE+Q DPSTGE IMPI D
Sbjct: 520 SQASPASSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDT 579
Query: 1623 RDLPKATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLY 1802
++LP+ATL HW L ++L+T R LNRFPTPW PDR+RA +FTS NS T K+LH
Sbjct: 580 QELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRE 639
Query: 1803 TQTW 1814
+QTW
Sbjct: 640 SQTW 643
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 709 bits (1829), Expect = 0.0
Identities = 366/608 (60%), Positives = 425/608 (69%), Gaps = 4/608 (0%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ+P AAD LE LGINSHP AITPHTHAAAKAIESDLYEV SHYLPKENPV+FLFMKP+K
Sbjct: 42 AQSPAAADTLELLGINSHPLAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFMKPSK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
LR+FHRGP H D FLNA++EPKDVPRYP DTVI + I T +AFMGDTLHFL PSF+T+
Sbjct: 102 LRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITS 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQ
Sbjct: 162 LFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQ 221
Query: 543 LEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
L+WLT G+L + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFL
Sbjct: 222 LQWLTAGYLIS-ESTTVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFL 280
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNY
Sbjct: 281 PSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNY 340
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 1082
F+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL WQP+ L
Sbjct: 341 FDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLL 400
Query: 1083 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGS 1262
EF V TV R PPGF +P +P PVN DA T A
Sbjct: 401 EFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA----------------------- 437
Query: 1263 AENLASHTSLKVGHADLSTEQLRALHELGNTRLGG---PLLPKITXXXXXXXXXXXXXXX 1433
++ SL + +LS +QL ALH LG+ R G P PK
Sbjct: 438 ----CANQSLPLD--NLSEDQLEALHVLGSLRTDGESLPSPPKAPLETGPHPTPTISAAG 491
Query: 1434 XXXTQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPI 1613
T + ++ + DP TLPW AWLP L ALGFEA EIQTDP IMPI
Sbjct: 492 PTKTVPTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPI 551
Query: 1614 ADVRDLPKATLQEHWNEPG-LSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKS 1790
D++ LP T E+ + KV+ T + LNR PTPW PDR RA ++ S NS T K+
Sbjct: 552 TDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKA 611
Query: 1791 LHLYTQTW 1814
LH +Q W
Sbjct: 612 LHKESQNW 619
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 443 bits (1139), Expect = e-121
Identities = 215/379 (56%), Positives = 273/379 (72%), Gaps = 12/379 (3%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQT EAAD LE LG+ +HPYAI HTHAA KA+E DLY VSHYLP+++PV+F+FMKPAK
Sbjct: 42 AQTGEAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
L++ RGP H D F+N+ VEPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV
Sbjct: 102 LQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGT 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQ 542
LFA SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y Q
Sbjct: 162 LFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQ 221
Query: 543 LEWLTVGHL-----TAPN-------QPTITAQRLETKGANHLFIFQRGNYLTPERRTFTT 686
L WL VG + AP+ + +TAQR+ETKGANHLF+FQRG TP+ R+ T
Sbjct: 222 LGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIAT 281
Query: 687 TEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQH 866
Y+TVP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ
Sbjct: 282 NTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQE 341
Query: 867 YQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVK 1046
Y P E+ LL NYF + L S E+VL+G+L ++L RP++S + + G+P F +
Sbjct: 342 YSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQ 401
Query: 1047 LIKALDWQPITLEFPVRTV 1103
L++AL W + L PVR V
Sbjct: 402 LLEALLWTNVDLILPVRYV 420
Score = 87.0 bits (214), Expect = 2e-14
Identities = 47/106 (44%), Positives = 57/106 (53%)
Frame = +3
Query: 1497 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLPKATLQEHWNEPGLS 1676
N+ A LPW W+PKLNALGFEA E Q P T IMPI D+ K + H
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667
Query: 1677 KVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLYTQTW 1814
++L + L+R PT W PD RA SFTS N T K L +Q+W
Sbjct: 668 ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSW 713
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 419 bits (1076), Expect = e-114
Identities = 207/372 (55%), Positives = 267/372 (71%), Gaps = 8/372 (2%)
Frame = +3
Query: 21 ADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHR 200
AD+LE LGI ++P+A+ HTHAAAK IE D+Y++VS YLPKENP +F+FMK +KL++F R
Sbjct: 48 ADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKRSKLQYFRR 107
Query: 201 GPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPTNIAFMGDTLHFLSPSFVTALFAH 374
GP D FLNAH+EPKDV RY DT+ + I TN AFMGDTLHFL + + +F
Sbjct: 108 GPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKS 167
Query: 375 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 554
SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+
Sbjct: 168 SPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWI 227
Query: 555 TVGHLTAPNQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 722
VG ++ +T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IFL
Sbjct: 228 KVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFL 287
Query: 723 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 902
P+++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVNY
Sbjct: 288 PKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNY 347
Query: 903 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPI 1076
F A L S TCF++VLSG + ++L +P + +IQ+ F G F +L++AL+W +
Sbjct: 348 FLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDV 405
Query: 1077 TLEFPVRTVNTR 1112
TL +P +T + R
Sbjct: 406 TLTYPTKTFDNR 417
Score = 64.3 bits (155), Expect = 2e-07
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +3
Query: 1515 LPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLPKATLQEHWNEPGLSKVL-TT 1691
LPW AW+PKL LGF+ ++Q DP+ G I PI ++R +PK G+ +V+ T
Sbjct: 707 LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKC------KPEGVPEVVYKT 759
Query: 1692 RRGLNRFPTPWCPDRSRALSFTSYFNN 1772
GL R PTP+ P+ RA ++TS N
Sbjct: 760 LDGLARAPTPYSPNPIRARAYTSDVKN 786
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 404 bits (1038), Expect = e-110
Identities = 207/394 (52%), Positives = 265/394 (67%), Gaps = 6/394 (1%)
Frame = +3
Query: 18 AADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFH 197
AA+ LE LGINS+P+A T HTH+AAKAIE+DLY S LPKENPVSFLFMKPAKLRFFH
Sbjct: 47 AANVLEDLGINSNPFATTAHTHSAAKAIENDLYFSASSLLPKENPVSFLFMKPAKLRFFH 106
Query: 198 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 377
RGP H D F+N VEPKDV RY DT++S L + T+ AFMGD+LHFL SF+ LF+ +
Sbjct: 107 RGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSHAFMGDSLHFLPFSFLVRLFSDN 166
Query: 378 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYD 539
+L+TL AT+VLP EA + L S+YP IYTL Y F Y PGGH GA Y H+
Sbjct: 167 VQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELK 226
Query: 540 QLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 719
QL+WL+VG LT TITAQ++ETK ANHLFIFQRG+ +TP R F+T +VT+P IF
Sbjct: 227 QLDWLSVGRLT-DGVTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIF 285
Query: 720 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 899
LPEK+N R PI KT++MQMF Y+K VK+ ERDIWAK+RQLI T++LQ + E+ L N
Sbjct: 286 LPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTN 345
Query: 900 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 1079
YF F S CF+DVL G + R +P+++ + V Q G FV+L++AL+W +
Sbjct: 346 YFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVD 405
Query: 1080 LEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDAD 1181
L+ + + + R GF + PDD++
Sbjct: 406 LKLDTKNYDFKRREGNGFLS--LSKVAAGPDDSE 437
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 401 bits (1030), Expect = e-109
Identities = 195/372 (52%), Positives = 261/372 (70%), Gaps = 6/372 (1%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ + LPKENP++FLFMK +K
Sbjct: 42 AQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFV 356
L++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL +
Sbjct: 102 LQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAI 161
Query: 357 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 536
+F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y
Sbjct: 162 REIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEY 221
Query: 537 DQLEWLTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 704
QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT
Sbjct: 222 SQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT 281
Query: 705 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 884
+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+
Sbjct: 282 LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKEL 341
Query: 885 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 1064
L+VNY+ + LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+
Sbjct: 342 ALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALE 401
Query: 1065 WQPITLEFPVRT 1100
W ++L + V T
Sbjct: 402 WVDVSLSYKVET 413
Score = 64.7 bits (156), Expect = 1e-07
Identities = 39/104 (37%), Positives = 56/104 (53%)
Frame = +3
Query: 1503 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLPKATLQEHWNEPGLSKV 1682
+P LPW AWL KL LGF +++Q DP+ G I PI V+ LPK + ++ +P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCSPEK--VDPSLLKM 753
Query: 1683 LTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLYTQTW 1814
L + R PTP+ P RA +++S NS L + W
Sbjct: 754 LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 400 bits (1028), Expect = e-108
Identities = 195/372 (52%), Positives = 261/372 (70%), Gaps = 6/372 (1%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ + LPKENP++FLFMK +K
Sbjct: 42 AQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFV 356
L++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL +
Sbjct: 102 LQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTLHFLPLGAI 161
Query: 357 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 536
+F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y
Sbjct: 162 REIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEY 221
Query: 537 DQLEWLTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 704
QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT
Sbjct: 222 SQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT 281
Query: 705 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 884
+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+
Sbjct: 282 LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKEL 341
Query: 885 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 1064
L+VNY+ + LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+
Sbjct: 342 ALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALE 401
Query: 1065 WQPITLEFPVRT 1100
W ++L + V T
Sbjct: 402 WVDVSLSYKVET 413
Score = 63.5 bits (153), Expect = 3e-07
Identities = 39/104 (37%), Positives = 55/104 (52%)
Frame = +3
Query: 1503 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLPKATLQEHWNEPGLSKV 1682
+P LPW AWL KL LGF +++Q DP+ G I PI V+ LPK + ++ P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCSPEK--VNPSLLKM 753
Query: 1683 LTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLYTQTW 1814
L + R PTP+ P RA +++S NS L + W
Sbjct: 754 LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 399 bits (1026), Expect = e-108
Identities = 195/372 (52%), Positives = 259/372 (69%), Gaps = 6/372 (1%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ + LPKENP++FLFMK +K
Sbjct: 42 AQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFV 356
L++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL +
Sbjct: 102 LQYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAI 161
Query: 357 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 536
+F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y
Sbjct: 162 REIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEY 221
Query: 537 DQLEWLTVGHLT----APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 704
QL+WL VG + +T+Q LETKGANHLF+FQRGN+ TP RTF +VT
Sbjct: 222 SQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT 281
Query: 705 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 884
+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+
Sbjct: 282 LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKEL 341
Query: 885 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 1064
L+VNY+ + LDS TCF++VL+G +++L +P+ + G+ F +L++AL+
Sbjct: 342 ALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALE 401
Query: 1065 WQPITLEFPVRT 1100
W ++L + V T
Sbjct: 402 WVDVSLSYKVET 413
Score = 63.2 bits (152), Expect = 4e-07
Identities = 41/120 (34%), Positives = 62/120 (51%)
Frame = +3
Query: 1455 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLP 1634
+++ QG ++E +P LPW AWL KL LGF ++Q DP+ G I PI ++ LP
Sbjct: 682 STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739
Query: 1635 KATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLYTQTW 1814
K + ++ P L K+L + R PTP+ P RA +++S NS L + W
Sbjct: 740 KCSPEK--VNPSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 398 bits (1022), Expect = e-108
Identities = 194/372 (52%), Positives = 260/372 (69%), Gaps = 6/372 (1%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
AQ P AAD+LE LGI S+P+++ HTHAAAK+IE D+Y++ + LPKENP++FLFMK +K
Sbjct: 42 AQDPAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFV 356
L++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL +
Sbjct: 102 LQYFHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAI 161
Query: 357 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 536
+F +S KL TLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y
Sbjct: 162 REIFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEY 221
Query: 537 DQLEWLTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 704
QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT
Sbjct: 222 SQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT 281
Query: 705 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 884
+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+
Sbjct: 282 LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKEL 341
Query: 885 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 1064
L+VNY+ + LDS TCF++VL+G +++L +P+ + G+ F +L++AL+
Sbjct: 342 ALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALE 401
Query: 1065 WQPITLEFPVRT 1100
W ++L + V T
Sbjct: 402 WVDVSLSYRVET 413
Score = 63.9 bits (154), Expect = 2e-07
Identities = 41/120 (34%), Positives = 63/120 (52%)
Frame = +3
Query: 1455 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEAIMPIADVRDLP 1634
+++ QG ++E +P LPW AWL KL LGF ++Q DP+ G I PI ++ LP
Sbjct: 682 STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739
Query: 1635 KATLQEHWNEPGLSKVLTTRRGLNRFPTPWCPDRSRALSFTSYFNNSLTFKSLHLYTQTW 1814
K + ++ P L K+L ++ R PTP+ P RA +++S NS L + W
Sbjct: 740 KCSPEK--VNPSLLKMLNSQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 395 bits (1015), Expect = e-107
Identities = 201/394 (51%), Positives = 263/394 (66%), Gaps = 10/394 (2%)
Frame = +3
Query: 3 AQTPEAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAK 182
A + AD LE LGI ++P+A PHTH AAKAIE+DLY + S + KE PV+F+FMK AK
Sbjct: 42 AHSESTADLLEDLGIATNPFAAEPHTHGAAKAIENDLYYIASTRMTKEEPVTFMFMKRAK 101
Query: 183 LRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTA 362
L++F RGP D F+N VEPKDV RY +DT+ S + I T F+GDTLHFL PSF+T
Sbjct: 102 LQYFRRGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFLTK 161
Query: 363 LFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGAS 521
LFA +PK+QT+ AT+VLP EALY L SLYP +Y+L+Y + F Y PGGH GA
Sbjct: 162 LFARNPKIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAE 221
Query: 522 YFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYV 701
Y H+ Q++WL GH+ + ITAQ+LETK ANHLFI++RG Y TPE R F T YV
Sbjct: 222 YVHELKQIDWLRFGHI-IDGKVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYV 280
Query: 702 TVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSE 881
T+P IFLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+E
Sbjct: 281 TLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTE 340
Query: 882 ITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKAL 1061
I LVNYF F A + T F+ +L G++I+++ RP+ + + Q G F +L++AL
Sbjct: 341 IVHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEAL 400
Query: 1062 DWQPITLE---FPVRTVNTRLRGPPGFHNPFTKP 1154
W I L PV+T + R G ++PFT P
Sbjct: 401 SWDEIDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 392 bits (1006), Expect = e-106
Identities = 204/363 (56%), Positives = 253/363 (69%), Gaps = 1/363 (0%)
Frame = +3
Query: 21 ADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHR 200
AD LE L I S+P+AI HTHAAAKAIE+DLY V SH LP E P++FLFMK KL F R
Sbjct: 48 ADTLENLEILSNPFAIETHTHAAAKAIENDLYFVASHQLPAE-PITFLFMKRNKLAQFRR 106
Query: 201 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 380
GP GD FLN VEPKD+ RYP+DT+I L ++ T +AFMGDTLHFLS F+ LF +
Sbjct: 107 GPQQGDIFLNKIVEPKDIARYPEDTLIDSL-HVNTEVAFMGDTLHFLSFHFLGRLFHLNK 165
Query: 381 KLQTLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLT 557
LQTL AT+VLP EA YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL
Sbjct: 166 NLQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLR 225
Query: 558 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 737
VG + NQ ITAQR+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+K+N
Sbjct: 226 VGRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFN 284
Query: 738 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 917
R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F A
Sbjct: 285 TRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIA 344
Query: 918 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 1097
DS TCF D+LSG+L ++L +PL + + F G P F KL+KAL WQ IT+ V
Sbjct: 345 KQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVA 404
Query: 1098 TVN 1106
+N
Sbjct: 405 DIN 407