BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000021
         (1022 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   607   e-171
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   607   e-171
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   607   e-171
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   605   e-171
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   603   e-170
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   599   e-169
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   596   e-168
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   586   e-165
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 572   e-162
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   496   e-138
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   423   e-116
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             385   e-104
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   385   e-104
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   381   e-103
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   370   e-100
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 355   2e-95
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   355   2e-95
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   354   3e-95
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 353   5e-95
ref|YP_002341559.1| replication-associated protein [Schlumberger...   341   2e-91

>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  607 bits (1566), Expect = e-171
 Identities = 294/337 (87%), Positives = 312/337 (92%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587  QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  607 bits (1566), Expect = e-171
 Identities = 294/337 (87%), Positives = 312/337 (92%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587  QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  607 bits (1566), Expect = e-171
 Identities = 294/337 (87%), Positives = 312/337 (92%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587  QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  605 bits (1560), Expect = e-171
 Identities = 293/337 (86%), Positives = 311/337 (92%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587  QGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  603 bits (1554), Expect = e-170
 Identities = 292/337 (86%), Positives = 310/337 (91%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587  QGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  599 bits (1545), Expect = e-169
 Identities = 290/337 (86%), Positives = 310/337 (91%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            + + P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P ++++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT
Sbjct: 587  QGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLT 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDW KKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  596 bits (1537), Expect = e-168
 Identities = 288/337 (85%), Positives = 307/337 (91%)
 Frame = +2

Query: 11   TDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHW 190
            T + P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW
Sbjct: 527  TLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHW 586

Query: 191  NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 370
              P + ++++TLR  NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML 
Sbjct: 587  QGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLA 646

Query: 371  ENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQ 550
            EN   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647  ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706

Query: 551  FRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 730
            FRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEA
Sbjct: 707  FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEA 766

Query: 731  LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLV 910
            LISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLV
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLV 826

Query: 911  PSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            PSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDND
Sbjct: 827  PSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 863


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  586 bits (1511), Expect = e-165
 Identities = 284/336 (84%), Positives = 304/336 (90%)
 Frame = +2

Query: 14   DEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWN 193
            D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW 
Sbjct: 533  DAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQ 592

Query: 194  EPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTE 373
               L ++L+TLR LNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTE
Sbjct: 593  GHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTE 652

Query: 374  NVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQF 553
            N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQF
Sbjct: 653  NTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQF 712

Query: 554  RTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 733
            RTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEAL
Sbjct: 713  RTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEAL 772

Query: 734  ISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVP 913
            ISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PG+HLLVP
Sbjct: 773  ISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVP 832

Query: 914  SLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            SLMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDND
Sbjct: 833  SLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDND 868


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  572 bits (1475), Expect(2) = e-162
 Identities = 275/317 (86%), Positives = 294/317 (92%)
 Frame = +2

Query: 71   KLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPT 250
            K   +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P   K++ TLR LNRFPT
Sbjct: 535  KAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPT 594

Query: 251  PWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGK 430
            PW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AISVIHGAGGSGK
Sbjct: 595  PWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGK 654

Query: 431  SQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDD 610
            SQALQTLLRQNP+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDD
Sbjct: 655  SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDD 714

Query: 611  YGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYI 790
            YGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYI
Sbjct: 715  YGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYI 774

Query: 791  NATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYA 970
            NATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYA
Sbjct: 775  NATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYA 834

Query: 971  GCQGITAPRVQILLDND 1021
            GCQGITAPRVQILLDND
Sbjct: 835  GCQGITAPRVQILLDND 851



 Score = 28.1 bits (61), Expect(2) = e-162
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 13  RRGPSQQRPRNPALGRLVAQTER 81
           RR P QQR  NP +G L A+ +R
Sbjct: 516 RRHPRQQRSTNPPMGSLAAKAKR 538


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  496 bits (1278), Expect = e-138
 Identities = 241/330 (73%), Positives = 274/330 (83%), Gaps = 1/330 (0%)
 Frame = +2

Query: 35   DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSK 211
            DP TLPW AWLP L ALGFEA EIQTDP     IMPI D++ LP  T  E+ +      K
Sbjct: 515  DPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDK 574

Query: 212  VLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 391
            V+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE     L
Sbjct: 575  VVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRL 634

Query: 392  AISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 571
             +SVIHGAGGSGKSQALQT+LR +P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERA
Sbjct: 635  GLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERA 694

Query: 572  FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 751
            FV S +PVVIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTHHE+NE+A+I++L P
Sbjct: 695  FVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEP 754

Query: 752  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKA 931
            AT IFS L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+PG+HLLVPSL+KKA
Sbjct: 755  ATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKA 814

Query: 932  AFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            AF DAGHKVSTYAGCQGITAP+VQILLD+D
Sbjct: 815  AFADAGHKVSTYAGCQGITAPKVQILLDSD 844


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  423 bits (1088), Expect = e-116
 Identities = 202/331 (61%), Positives = 257/331 (77%)
 Frame = +2

Query: 29   NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 208
            N+  A LPW  W+PKLNALGFEA E Q  P T  +IMPI D+    K  +P H       
Sbjct: 612  NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667

Query: 209  KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 388
            ++L  L+ L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727

Query: 389  LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 568
            + +SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728  VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787

Query: 569  AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 748
            A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L 
Sbjct: 788  AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847

Query: 749  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 928
            P+T IFS+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KK
Sbjct: 848  PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907

Query: 929  AAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            AAF++AGHK STYAGCQGITA ++QILLD++
Sbjct: 908  AAFSEAGHKTSTYAGCQGITARKLQILLDSN 938


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  385 bits (988), Expect = e-104
 Identities = 195/334 (58%), Positives = 237/334 (70%), Gaps = 1/334 (0%)
 Frame = +2

Query: 23   PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEP 199
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + +  H    
Sbjct: 543  PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 200  GLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 379
                V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 380  TANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRT 559
               + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 560  FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 739
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 740  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 919
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 920  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDND
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDND 870


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  385 bits (988), Expect = e-104
 Identities = 195/334 (58%), Positives = 237/334 (70%), Gaps = 1/334 (0%)
 Frame = +2

Query: 23   PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEP 199
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + +  H    
Sbjct: 543  PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 200  GLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 379
                V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 380  TANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRT 559
               + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 560  FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 739
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 740  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 919
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 920  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDND
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDND 870


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  381 bits (978), Expect = e-103
 Identities = 185/194 (95%), Positives = 190/194 (97%)
 Frame = +2

Query: 440  LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 619
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 620  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 799
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 800  HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 979
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 980  GITAPRVQILLDND 1021
            GITAPRVQILLDND
Sbjct: 181  GITAPRVQILLDND 194


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  370 bits (949), Expect = e-100
 Identities = 190/325 (58%), Positives = 234/325 (72%)
 Frame = +2

Query: 47   LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 226
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 227  RGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 406
             GL R PTP+ P+  RARA+TSDVKN R G  L ++ + W      L E     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 407  HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 586
            HGAGGSGKSQALQTL++ NPEL I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 587  SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 766
            +P+VIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 767  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDA 946
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PG+H+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 947  GHKVSTYAGCQGITAPRVQILLDND 1021
            GHKVSTYAGCQGITAP++QILL  +
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEE 1025


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  355 bits (910), Expect = 2e-95
 Identities = 185/329 (56%), Positives = 228/329 (69%)
 Frame = +2

Query: 35   DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 214
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 215  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 394
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 395  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 574
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 575  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 754
            +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 755  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 934
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 935  FTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            F++ GHKVSTYAGCQG+TAPRVQILL  +
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEE 1019


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  355 bits (910), Expect = 2e-95
 Identities = 185/329 (56%), Positives = 228/329 (69%)
 Frame = +2

Query: 35   DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 214
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 215  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 394
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 395  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 574
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 575  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 754
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 755  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 934
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 935  FTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            F++ GHKVSTYAGCQG+TAPRVQILL  +
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEE 1019


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  354 bits (909), Expect = 3e-95
 Identities = 184/329 (55%), Positives = 227/329 (68%)
 Frame = +2

Query: 35   DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 214
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 215  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 394
            L +     R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LNSQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 395  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 574
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 575  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 754
            +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 755  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 934
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 935  FTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            F++ GHK STYAGCQG+TAPRVQILL  +
Sbjct: 991  FSEMGHKASTYAGCQGLTAPRVQILLSEE 1019


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  353 bits (907), Expect = 5e-95
 Identities = 184/329 (55%), Positives = 228/329 (69%)
 Frame = +2

Query: 35   DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 214
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753

Query: 215  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 394
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 395  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 574
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 575  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 754
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 755  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 934
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 935  FTDAGHKVSTYAGCQGITAPRVQILLDND 1021
            F++ GHKVSTYAGCQG+TAPRVQILL  +
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEE 1019


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  341 bits (875), Expect = 2e-91
 Identities = 173/331 (52%), Positives = 219/331 (66%)
 Frame = +2

Query: 29   NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 208
            +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K       + PG++
Sbjct: 710  HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTPA----SHPGIN 765

Query: 209  KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 388
            +VLT +   +R PTP+ PD  RA+AF SDVKN R G  L  +++ W E  +  TE     
Sbjct: 766  EVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRT 822

Query: 389  LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 568
            + +SVIHG GGSGKS ALQ  LR NPE  I V+LPTNELRLDW +KLP   P   +TFE+
Sbjct: 823  IGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEK 882

Query: 569  AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 748
            + +   S VVI DDY KLP G+IEA+  T++ LE +ILTGDP QS HHE NE AL SK+A
Sbjct: 883  SLLVGASSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGDPNQSFHHEPNENALTSKIA 942

Query: 749  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 928
            P + I    SRYY+NATHRN + LAN L VYS       +T      PG HLLVPS+ KK
Sbjct: 943  PFSEIAQSFSRYYLNATHRNKRDLANMLAVYSEVEGTTNITMSSTVLPGRHLLVPSMYKK 1002

Query: 929  AAFTDAGHKVSTYAGCQGITAPRVQILLDND 1021
             A+ + GHKVSTYAGCQGITAP +QIL+DND
Sbjct: 1003 QAYGEMGHKVSTYAGCQGITAPEIQILIDND 1033