BLASTX nr result
ID: Rehmannia24_contig00000019
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00000019
(8780 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 3332 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 3329 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 3326 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 3323 0.0
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 3207 0.0
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 3204 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 3202 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 3191 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 1137 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 1133 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 964 0.0
ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf ... 650 0.0
ref|NP_062428.1| replicase [Cherry mottle leaf virus] gi|9294781... 649 0.0
gb|AGK63259.1| replicase [Cherry mottle leaf virus] 643 0.0
ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi... 634 e-178
gb|ABY71563.1| polymerase [Apple chlorotic leaf spot virus] 632 e-178
ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus] gi|... 631 e-177
dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus] 625 e-176
gb|AGW07339.1| RNA polymerase [Apple chlorotic leaf spot virus] 624 e-175
gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus] 624 e-175
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3332 bits (8639), Expect = 0.0
Identities = 1596/1991 (80%), Positives = 1772/1991 (89%), Gaps = 6/1991 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 416 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 589
+ + DHTSFINRL+ASKDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFINRLVASKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 590 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 769
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 770 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 949
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 950 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1129
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1130 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 1309
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1310 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 1489
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1490 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 1669
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1670 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXS 1849
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 1850 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 2029
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESESEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 2030 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 2200
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 2201 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 2380
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 2381 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 2560
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2561 GYNERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 2740
GY+E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 2741 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 2920
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 2921 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 3100
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 3101 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 3280
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 3281 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 3460
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 3461 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 3640
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 3641 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 3820
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 3821 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4000
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4001 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4180
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4181 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFC 4360
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4361 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4540
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4541 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4720
EGDPFLKPFIFLG RI+K P CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4721 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 4900
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 4901 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 5080
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 5081 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 5260
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 5261 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 5440
QLPEEIYIHSNKNFDDLN+WVK FFQ+DICVESDYEAFDA QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHLMKDAHFP 1796
Query: 5441 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 5620
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 5621 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 5800
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 5801 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 5980
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 5981 LYIEQSSDEDI 6013
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3329 bits (8632), Expect = 0.0
Identities = 1594/1991 (80%), Positives = 1771/1991 (88%), Gaps = 6/1991 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 416 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 589
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 590 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 769
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 770 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 949
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 950 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1129
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1130 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 1309
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1310 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 1489
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1490 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 1669
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1670 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXS 1849
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 1850 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 2029
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESESEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 2030 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 2200
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 2201 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 2380
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 2381 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 2560
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2561 GYNERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 2740
GY+E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 2741 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 2920
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 2921 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 3100
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 3101 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 3280
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 3281 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 3460
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 3461 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 3640
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 3641 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 3820
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 3821 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4000
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4001 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4180
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4181 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFC 4360
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4361 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4540
STFLGG+DEFK+++GESLVTSIL+ + ITF+RLNMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4541 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4720
EGDPFLKPFIFLGQRI+K P CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4721 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 4900
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 4901 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 5080
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 5081 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 5260
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 5261 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 5440
QLPEEIYIHSNKNFDDL +WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 5441 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 5620
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 5621 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 5800
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 5801 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 5980
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 5981 LYIEQSSDEDI 6013
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3326 bits (8625), Expect = 0.0
Identities = 1593/1991 (80%), Positives = 1770/1991 (88%), Gaps = 6/1991 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 416 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 589
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 590 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 769
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 770 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 949
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 950 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1129
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1130 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 1309
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1310 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 1489
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1490 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 1669
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1670 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXS 1849
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 1850 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 2029
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESELEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 2030 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 2200
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 2201 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 2380
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 2381 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 2560
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2561 GYNERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 2740
GY+E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 2741 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 2920
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 2921 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 3100
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 3101 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 3280
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 3281 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 3460
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 3461 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 3640
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 3641 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 3820
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 3821 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4000
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4001 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4180
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4181 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFC 4360
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4361 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4540
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4541 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4720
EGDPFLKPFIFLG RI+K P CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4721 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 4900
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 4901 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 5080
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 5081 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 5260
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 5261 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 5440
QLPEEIYIHSNKNFDDLN+WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 5441 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 5620
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 5621 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 5800
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 5801 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 5980
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 5981 LYIEQSSDEDI 6013
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3323 bits (8617), Expect = 0.0
Identities = 1592/1991 (79%), Positives = 1769/1991 (88%), Gaps = 6/1991 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 416 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 589
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 590 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 769
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 770 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 949
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 950 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1129
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1130 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 1309
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1310 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 1489
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1490 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 1669
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1670 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXS 1849
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 1850 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 2029
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESELEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 2030 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 2200
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 2201 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 2380
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 2381 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 2560
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2561 GYNERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 2740
GY+E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 2741 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 2920
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 2921 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 3100
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 3101 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 3280
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 3281 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 3460
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 3461 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 3640
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 3641 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 3820
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 3821 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4000
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4001 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4180
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4181 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFC 4360
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4361 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4540
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4541 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4720
EGDPFLKPFIFLG RI+K P CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4721 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 4900
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 4901 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 5080
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 5081 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 5260
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 5261 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 5440
QLPEEIYIHSNKNFDDL +WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 5441 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 5620
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 5621 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 5800
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 5801 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 5980
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 5981 LYIEQSSDEDI 6013
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
replication protein; Includes: RecName: Full=RNA-directed
RNA polymerase; Includes: RecName: Full=Helicase
gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
leaf blotch virus]
Length = 1962
Score = 3207 bits (8316), Expect = 0.0
Identities = 1555/1988 (78%), Positives = 1731/1988 (87%), Gaps = 3/1988 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 416 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 595
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 596 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 775
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 776 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 955
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 956 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1135
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1136 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 1315
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1316 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 1495
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1496 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 1672
LER+RLPFWN +DYDLKR+R N Y+IL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1673 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXSR 1852
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1853 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 2032
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDVSDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 2033 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 2212
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 2213 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 2392
FFSAF FE + LR+DF++WL F+GG++ L IRP+GV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754
Query: 2393 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYNE 2572
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG++E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 2573 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 2752
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSL+EII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874
Query: 2753 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 2932
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMTAGSFF 934
Query: 2933 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 3112
LMPKG+QK+ARHSV N RVS+TFRKHVRRL+GSPIAIR++NY+N CLI+A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTCLINAFSKAMKRS 994
Query: 3113 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 3292
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GKC+V+G+G LRI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGALRI 1054
Query: 3293 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 3469
S+AL+NNHFS + + M+RTFVSHL +KGN+NVLEG DAML D+ AGVN IQFAA++
Sbjct: 1055 SMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGVNKIQFAANF 1114
Query: 3470 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 3649
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTMVCGFAGSGKSRKL 1174
Query: 3650 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 3829
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 3830 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4009
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRLIGGQ+I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNI 1294
Query: 4010 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4189
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4190 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTF 4369
DLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRA+TR S CSTF
Sbjct: 1355 DLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTF 1414
Query: 4370 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4549
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4550 PFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4729
PFLKPFIFLGQR++K P CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4730 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 4909
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 4910 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 5089
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 5090 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 5269
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 5270 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 5449
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKI 1774
Query: 5450 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 5629
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 5630 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 5809
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 5810 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 5989
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 5990 EQSSDEDI 6013
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 3204 bits (8308), Expect = 0.0
Identities = 1554/1988 (78%), Positives = 1730/1988 (87%), Gaps = 3/1988 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 416 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 595
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 596 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 775
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 776 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 955
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 956 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1135
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1136 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 1315
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1316 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 1495
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1496 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 1672
LER+RLPFWN +DYDLKR+R N Y+IL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1673 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXSR 1852
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1853 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 2032
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDISDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 2033 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 2212
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 2213 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 2392
FFSAF FE + LR+DF++WL F+GG++ L IRP+GV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754
Query: 2393 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYNE 2572
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG++E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 2573 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 2752
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSL+EII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874
Query: 2753 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 2932
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934
Query: 2933 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 3112
LMPKG+QK+ARHSV N PRVS+TFRKHVRRL+GSPIAIR++NY+N CLI+A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENYKNTCLINAFSKAMKRS 994
Query: 3113 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 3292
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GK +V+G+G LRI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYVVLGKGALRI 1054
Query: 3293 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 3469
S+AL+NNHFS + + M+RTFVSHL +KGN+NVLEG D ML D+ AGVN IQFAA++
Sbjct: 1055 SMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANF 1114
Query: 3470 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 3649
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGTDVTMVCGFAGSGKSRKL 1174
Query: 3650 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 3829
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 3830 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4009
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRLIGGQ+I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNI 1294
Query: 4010 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4189
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4190 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTF 4369
DLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRA+TR S CSTF
Sbjct: 1355 DLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTF 1414
Query: 4370 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4549
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4550 PFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4729
PFLKPFIFLGQRI+K P CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4730 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 4909
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRL+FREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLIFREEEEN 1594
Query: 4910 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 5089
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 5090 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 5269
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 5270 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 5449
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKI 1774
Query: 5450 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 5629
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 5630 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 5809
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 5810 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 5989
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 5990 EQSSDEDI 6013
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 3202 bits (8301), Expect = 0.0
Identities = 1550/1988 (77%), Positives = 1727/1988 (86%), Gaps = 3/1988 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 416 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 595
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S G ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGGPELFSRNFIKSLENKE 180
Query: 596 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 775
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 776 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 955
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 956 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1135
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1136 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 1315
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1316 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 1495
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1496 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 1672
LER+RLPFWN +DYDLKR+R N YDIL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1673 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXSR 1852
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1853 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 2032
L+ AGHD+ +DE E+EL+ + I L+D SF
Sbjct: 601 LKAAGHDTSDDE------------------EEELTSVEQTGP---IKILADP-----LSF 634
Query: 2033 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 2212
N+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 635 MNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 2213 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 2392
FFSAF FE + LR+DF++WL F+GG++ L IRPDG++MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFRG 754
Query: 2393 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYNE 2572
VTL++HDR+ + E V+ +H GFEEGH+V +G HF+GIETY V+T +P L D+PCG++E
Sbjct: 755 VTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFSE 814
Query: 2573 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 2752
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSLDEII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874
Query: 2753 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 2932
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934
Query: 2933 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 3112
LMPKG+QK+ARHSV N PRVS+TFRKHVRRL+GSPIAIR++NY+N CLI A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENYKNTCLIDAFSKAMKRS 994
Query: 3113 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 3292
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V GK +V+G+G RI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVVLGKGAFRI 1054
Query: 3293 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 3469
S+AL++NHFS + + M+RTFVSHL +KGN+NVLEG D ML D+ AGVN IQFAA++
Sbjct: 1055 SMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANF 1114
Query: 3470 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 3649
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTMVCGFAGSGKSRKL 1174
Query: 3650 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 3829
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 3830 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4009
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQAR+HN+MDE IL FEHD DRL+GGQ I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHDVDRLVGGQSI 1294
Query: 4010 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4189
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4190 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTF 4369
DLEKKAFSPI+NVMTFGESQGLTFNHVCI RWMVALTR++TR S CSTF
Sbjct: 1355 DLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTF 1414
Query: 4370 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4549
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4550 PFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4729
PFLKPFIFLGQRI+K P CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4730 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 4909
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 4910 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 5089
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 5090 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 5269
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 5270 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 5449
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFP+K+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPRKI 1774
Query: 5450 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 5629
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 5630 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 5809
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 5810 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 5989
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 5990 EQSSDEDI 6013
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 3191 bits (8273), Expect = 0.0
Identities = 1549/1988 (77%), Positives = 1721/1988 (86%), Gaps = 3/1988 (0%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 238
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 239 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 415
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 416 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 595
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLDNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 596 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 775
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 776 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 955
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 956 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1135
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1136 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 1315
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1316 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 1495
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE R DDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGY 480
Query: 1496 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 1672
LER+RLPFWN +DYDLKRRR N Y+IL ++ EER S GP+KMLQIEW+GIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKV 540
Query: 1673 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXXSR 1852
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1853 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 2032
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDISDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 2033 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 2212
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 2213 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 2392
FFSAF FE + LR+DF++WL F+GG++ L IRPDGV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFRG 754
Query: 2393 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYNE 2572
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG++E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 2573 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 2752
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSLDEII+IC QGD+
Sbjct: 815 EITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874
Query: 2753 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 2932
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K + +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTAGSFF 934
Query: 2933 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 3112
LMPKG+QK+ARHSV N RVS+TFRKHVRRL+GSPIAIR++NY+N LI A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTRLIDAFSKAMKRS 994
Query: 3113 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 3292
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GKC+V+G+G RI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGAFRI 1054
Query: 3293 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 3469
S+AL+NNHFS + + M+RTFVSHL +KG++NVLEG D +L D+ AGVN IQFAA++
Sbjct: 1055 SMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNKIQFAANF 1114
Query: 3470 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 3649
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTVVCGFAGSGKSRKL 1174
Query: 3650 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 3829
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 3830 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4009
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRL+GGQ I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLVGGQSI 1294
Query: 4010 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4189
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4190 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTF 4369
DLEKKAFSPI+NVMTFGESQGLTFNHVCI RWMVALTR++TR S CSTF
Sbjct: 1355 DLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTF 1414
Query: 4370 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4549
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4550 PFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4729
PFLKPFIFLGQRI+K P CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4730 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 4909
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 4910 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 5089
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 5090 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 5269
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 5270 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 5449
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKI 1774
Query: 5450 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 5629
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 5630 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 5809
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPEL YNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELAYNRFQVAIEE 1894
Query: 5810 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 5989
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 5990 EQSSDEDI 6013
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1137 bits (2941), Expect = 0.0
Identities = 551/614 (89%), Positives = 576/614 (93%)
Frame = +2
Query: 4172 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRI 4351
VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRAKTR
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4352 SFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDRE 4531
SFCST LGGID+FK++KGESLVTSILQ E ITF+RLNMMVKCNL++ EKKNGCSDEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4532 ERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKE 4711
ERLEGDPFLKPFIFLGQRI K PRCQTHLYITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4712 QREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVF 4891
QREYRE+MLVTNQFCDSYDK HINGKRETPGPMRFKAIYPKHSADDDMTFWMAV+KRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 4892 REEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKS 5071
REEEENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ LLE+S+NAFE+KKLEKS GTIKS
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIKS 300
Query: 5072 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 5251
HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 5252 IRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDA 5431
IRNQLPEEIY+HSNKNFDDLN+WVKKFFQRDI VESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 5432 HFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 5611
+FPQ VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 5612 FAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 5791
FAGDDMCALNNLP+ H FDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 5792 QVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 5971
QVAIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 5972 VRDLYIEQSSDEDI 6013
VRDL++EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1133 bits (2931), Expect = 0.0
Identities = 549/614 (89%), Positives = 575/614 (93%)
Frame = +2
Query: 4172 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRI 4351
VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRAKTR
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4352 SFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDRE 4531
SFCST LGGID+FK++KGESLVTSILQ E ITF+RLNMMVKCNL++ EKKNGCSDEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4532 ERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKE 4711
ERLEGDPFLKPFIFLGQRI K PRCQTHLYITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4712 QREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVF 4891
QREYRE+MLVTNQFCDSYDK HINGKRETPGPMRFKAIYPKHSADDDMTFWMAV+KRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 4892 REEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKS 5071
REEEENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ LLE+S+NAFE+KKLEKS GTI+S
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIRS 300
Query: 5072 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 5251
HSIRSDIDWALNDVFLFMKSQL TKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 5252 IRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDA 5431
IRNQLPEEIY+HSNKNFDDLN+WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 5432 HFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 5611
+FPQ VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 5612 FAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 5791
FAGDDMCALNNLP+ H FDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 5792 QVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 5971
QVAIEEGKV+ECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 5972 VRDLYIEQSSDEDI 6013
VRDL++EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus] gi|571026291|emb|CDF66416.2|
replication-associated polyprotein [Apricot vein clearing
associated virus]
Length = 1679
Score = 964 bits (2493), Expect = 0.0
Identities = 547/1193 (45%), Positives = 724/1193 (60%), Gaps = 64/1193 (5%)
Frame = +2
Query: 2621 FRGRKGAFLTKV-DADYGHNGMVYPHNSWVPSLDEIIKICDQGDEFNCALINFYDSDSSL 2797
FRGR F + + DYGHNG Y +W LD+ I FN L+ YD S +
Sbjct: 511 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567
Query: 2798 GFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVR 2977
GFHKDNE+ Y PILTV G+ E + +F +T G L+ Y ++ RH V
Sbjct: 568 GFHKDNEQCYAGYPILTV---NFGLALFEF-DSGEAFNLTDGDTILLSGDYLRKKRHRVT 623
Query: 2978 NTSP-RVSVTFRKHVRRLDGSPIAIRKDNYR---NICLISALSNALNRDKQVIIAKLRSV 3145
+ S R+S+TFR+HV R++ SP+ +N + N C+I A++ AL + + K+ +
Sbjct: 624 SLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIVAQ 683
Query: 3146 NGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRISL---ALQNNH 3316
+ D + D Q E + ++++L+ IV + G + L L +
Sbjct: 684 RPDLLQCLVDD----EMLDKQTT-ETICVIMNLHAT---IVNEDEGETMELNPEGLIKSS 735
Query: 3317 FSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI------------CAGVNYIQFA 3460
FS ++ H + + +KKG +D + D+ C + IQ+
Sbjct: 736 FSVLDEHMMVLSDIPNCRSKKG-------IDICMSPDLANSNCAANYEVTCQNLQVIQYQ 788
Query: 3461 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHM--LEERPKQIGFDVTAICGFAGSG 3634
AD+E A L NSFL TTG L ++ G ++FT M + ER +++ + GFAGSG
Sbjct: 789 ADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSG 848
Query: 3635 KS-------RQLQSWLH-------------------SRKKGNF---CVVSPRANLAADWS 3727
KS +++ +H R +GN C++SPR NLA DW
Sbjct: 849 KSLGLLNEVKRISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWE 908
Query: 3728 FKLELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCKVI 3907
KL E V TFE K K+ LI++DELTLFPNGY+DLL++ + + CK+I
Sbjct: 909 TKLGPSALEHCSVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLI 968
Query: 3908 LLFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMS--RFFNRFFDVPCFNQ 4081
L+FDPLQARY + D IL EHD D ++G ++ Y+Y S R FN F D+ +
Sbjct: 969 LIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDL---KK 1025
Query: 4082 AETTAEQKLW---------IFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMT 4234
E AE + ++ ++ ++ ++ P DVLLV S E F+ I MT
Sbjct: 1026 NEVDAESRETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMT 1085
Query: 4235 FGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESL 4414
FGESQGLT +H I RW+VALTRA+ +++F L G++ F L
Sbjct: 1086 FGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRL 1145
Query: 4415 VTSILQSEMITFDRLNMMV--KCNLVRNEKKNGCSDEVDREERLEGDPFLKPFIFLGQRI 4588
V +++ ++T RL+ MV K N V+ + G DEVDRE+RLEGD FLK IFLGQR
Sbjct: 1146 VAAVINKGLVTKKRLSSMVRAKLNYVKFKGLAG-KDEVDREDRLEGDLFLKGVIFLGQRC 1204
Query: 4589 KKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYD 4768
+ +TH ++ + NF CYNFD IR KE RE+R VTNQF D+Y+
Sbjct: 1205 EIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYE 1264
Query: 4769 KAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGL 4948
K+ T GP+RF+AIYP+H ADDD+TF MAV KRL F E + ++L +AH G +
Sbjct: 1265 IVQHVQKKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSI 1324
Query: 4949 LYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMK 5128
L+ N QK+GL F++D L EE VN FE KKLEKS + +HSIRSD DW+ N VFLFMK
Sbjct: 1325 LFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMK 1384
Query: 5129 SQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDD 5308
SQLCTKYEKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSNKNF+D
Sbjct: 1385 SQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFND 1444
Query: 5309 LNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGC 5488
LN+WVKK D+CVESDYEAFDASQD+YILSFE+ +M+ H P+++I AYIDLK LGC
Sbjct: 1445 LNEWVKKHAGDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGC 1504
Query: 5489 KLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFD 5668
KLGHF+IMRFTGEF TFLFNTLANMAFT+CRYEW G PIAFAGDDMCAL NL + F+
Sbjct: 1505 KLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFN 1564
Query: 5669 DLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIE 5848
++FE +SLKAK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIE
Sbjct: 1565 NVFEKISLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIE 1624
Query: 5849 VSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDE 6007
VSYAYSL ERL+++LK E Q++YHQAVVRFIV H+ L+TKV+DL+ EQS+++
Sbjct: 1625 VSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677
Score = 288 bits (736), Expect = 4e-74
Identities = 166/432 (38%), Positives = 241/432 (55%), Gaps = 6/432 (1%)
Frame = +2
Query: 59 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASK-- 232
MAL+ +T ++LG+F +KHV+ IYN + R F QKK+AS
Sbjct: 1 MALLY-RTPQVNLLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59
Query: 233 -VGIELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKK 409
+G+ L+P Y+ HSHP SK+ ENHIL ++LP + T + SIK SKV +++ K
Sbjct: 60 WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHI-TGSWVFSSIKPSKV---ESLATKG 115
Query: 410 RRVFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFF--SSNGSGSELFSNNFIKSI 583
++ INRL+ +KD RY + D+ S + ++ F++++
Sbjct: 116 KKSV------------LKTINRLLCAKDFGRYDVDTDSSVIRSISREAPDILPEPFVRAV 163
Query: 584 SGKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVD 763
G+ V HDEVHHWT M FL R + RF+F+VVYP ELL SQNPK+Y F+
Sbjct: 164 KGRN-VMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDS 222
Query: 764 KG-RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGEL 940
K ++ FFPDG +E YEQ+ N+ WLF ASH ++ WTV R S Y+HHLFEV G
Sbjct: 223 KSDKIVFFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNY 282
Query: 941 VTDSKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLR 1120
TD FF+D+ +ID+ IF RF + PI+ + + +VYSYL+CLKKPD++S +AKL+
Sbjct: 283 FTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLK 342
Query: 1121 QIIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWK 1300
Q++GDD++++ +FF R++ + LF S NK L P+ + F WK
Sbjct: 343 QLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWK 402
Query: 1301 KKNTFEFLFSLG 1336
N F+ LG
Sbjct: 403 SGN---FIKKLG 411
>ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
gi|57639322|gb|AAW55581.1| 216 kDa protein [Apricot
pseudo-chlorotic leaf spot virus]
Length = 1892
Score = 650 bits (1676), Expect = 0.0
Identities = 437/1179 (37%), Positives = 623/1179 (52%), Gaps = 47/1179 (3%)
Frame = +2
Query: 2615 SQFRGRKGA-FLTKVDADYGHNGMVYPHNSWVPSLDEIIKIC--DQGDEFNCALINFYDS 2785
+Q +G+KG F+ Y HN + YP + E I D +FN +LI Y+
Sbjct: 704 AQLKGKKGGYFVLDYPMVYFHNNVSYPSFEATMKIKECILKARRDWNIDFNASLIQIYEK 763
Query: 2786 DSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRAR 2965
S +G HKDNE+ Y+DD +LT+ +G S+ + + G+ LMP GYQK+ +
Sbjct: 764 GSIIGMHKDNEECYDDDGVLTLNVKGNATFSVSCHDNVIE--LKEGNELLMPPGYQKKFK 821
Query: 2966 HSVRNTSP-RVSVTFRKHVRRLD-GSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLR 3139
H V++ S R+SVT R H R S + K Y C+IS+L++ + +D+ + A +
Sbjct: 822 HGVKSESEGRISVTLRVHKRDFSFRSKVGFIKGKYD--CMISSLASLIRKDQDEMCAFVP 879
Query: 3140 SVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNH 3316
+V +R +S+ G SI+D + C A V + D I +G G+ + L L+ NH
Sbjct: 880 NV----LNRCISN-KGCSIDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNLRGNH 934
Query: 3317 FSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICA---GVNYIQFAADYENARTL 3487
FS V RS + + + K V + +K A + D A L
Sbjct: 935 FSVVSSRRSNLDSLANSKSDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLLRAVKL 994
Query: 3488 ANSFLNMTTGICLGRVLDGGEKYF------------THMLE----------ERP---KQI 3592
S TGI G + T +L+ ER K++
Sbjct: 995 LKSLNEGMTGIVSHNAAHEGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKERSNLIKEL 1054
Query: 3593 GF---DVTAICGFAGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEK 3757
F V + GFAGSGKS +Q+ + S KG+ VV PR LA+DWS K +
Sbjct: 1055 NFINKTVYGVFGFAGSGKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEK----GVDS 1110
Query: 3758 RKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNA--HCKVILLFDPLQA 3931
+ + TFES +KMD ++ I DE++L P GY+DL++ ++H +I L DPLQA
Sbjct: 1111 KDIKTFESALKMDIKGKNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGDPLQA 1170
Query: 3932 RYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLW 4111
Y + D+ IL E + RL + Y + S+R+++F V N+ Q +
Sbjct: 1171 SYFSAKDDNILSKESEIKRLFK-DGVNYKWYSYRINKFIASKLGVCGMNEFIGIDNQSV- 1228
Query: 4112 IFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXX 4291
+ D+ S +V+LV S +EK+ +S NVMTFGESQGLTF I
Sbjct: 1229 TYKDMPSAFHFMDSAKNHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIVLSEE 1288
Query: 4292 XXXXXXXRWMVALTRAKTRISFCSTFLGGI-DEFKVRKGESLVTSILQSEMITFDRLNMM 4468
MVA+TR + F GG D + KG L+ I+ + + + + M
Sbjct: 1289 AKLCSDAHIMVAITRFRKGFCFVLGSKGGKEDNLRTLKG-GLLQRIVSNLGASREFITNM 1347
Query: 4469 VKCNLVRNEK---KNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRC 4639
L +EK K DE+DREERL+GD +LK IFLG+R
Sbjct: 1348 SSVPLKLSEKVTKKGAGIDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVELEDSAI 1407
Query: 4640 QTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFK 4819
+ H+ + L I+ +E RE++ +NQ + M +
Sbjct: 1408 KCHIPVCSVQT-LGPELGRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKVNQAMSHE 1466
Query: 4820 AIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQ 4999
AIYP+H DDD+TF A++KRL F ENY + + G L + F +K+ ++ +Q
Sbjct: 1467 AIYPRHRMDDDLTFLAAIKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQIKSGRNQ 1526
Query: 5000 SLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAG 5179
SLL+ FE+ KL KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F +AKAG
Sbjct: 1527 SLLDLCRQEFEETKLSKSSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKRFTEAKAG 1586
Query: 5180 QTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVES 5359
QTLACFQH ILV+F+PWCRY E + + LP+ Y+H KNF +L K+ K+F +CVES
Sbjct: 1587 QTLACFQHEILVKFSPWCRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFSNGSVCVES 1646
Query: 5360 DYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTF 5539
DY AFD SQD IL+FEV ++ + +K+I++YI +KC LGC+LG F+IMRFTGEF TF
Sbjct: 1647 DYTAFDVSQDHTILAFEVEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIMRFTGEFSTF 1706
Query: 5540 LFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTES 5719
LFNTLANMAFT CRY+ G PI FAGDDMCAL ++ + + + E LSLKAKV RT+
Sbjct: 1707 LFNTLANMAFTFCRYQVPSGTPICFAGDDMCALRDIKEIPNHEHILEKLSLKAKVNRTKV 1766
Query: 5720 PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKS 5899
PMFCGWRL G++KEP L+Y R QVAIE +++E +++Y +E S+AY L ERLY L+
Sbjct: 1767 PMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMEVIDSYFLEFSFAYKLGERLYSYLEI 1826
Query: 5900 ERQIQYHQAVVRFIV--THIDKLKTKVRDLYIEQSSDED 6010
E Q+ YHQ + RF + H+ + ++K + SDED
Sbjct: 1827 E-QLNYHQVLTRFFIKNKHLLRGESKANISELIWLSDED 1864
Score = 171 bits (432), Expect = 7e-39
Identities = 119/408 (29%), Positives = 194/408 (47%), Gaps = 9/408 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + + + I E + +F+YSL ++ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQSQQEILGTLQFERIQKEEELKVNNFSYSLPEKGREWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P Y HSHP K ENHIL+++ S ++ + C SIK +K+ + + R +++
Sbjct: 64 PYSYNVHSHPCCKTLENHILYNVAASYLSKYAYVACLSIKANKMSKMEKLGRSSVRNYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
INRL+ SKD +RY S G SN FI
Sbjct: 124 -------------INRLVVSKDKARYGPSV----SPERVGCPKNSNLFI----------- 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W K Q+ SFL TK R T+V+PPE+L + +S P IY F++ L + P
Sbjct: 156 HDEIHYWNKGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLP 215
Query: 788 DGVKTEAYEQKLNMEWLFSASHLK------SGDHTWTVTRHKSIYAHHLFEVSAGE-LVT 946
DGV++E+Y Q L +L + + + G + ++ S+ +HHLF + E L+
Sbjct: 216 DGVRSESYSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIP 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP++ K++ YL LKKPD +S +AKLRQ
Sbjct: 276 EETRRFGPYDLFDVGALFVKPVRVPIQDFPLST--FKKIFIYLSSLKKPDEQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMP 1267
+ DV I+ ++F +R+ + + SF+ + D +P
Sbjct: 334 LCDSDVSIESVFLIQEFAQRV--EKDGIQRWSCSFWEHIKDRFFDALP 379
>ref|NP_062428.1| replicase [Cherry mottle leaf virus]
gi|9294781|gb|AAF86666.1|AF170028_1 216kDa protein
[Cherry mottle leaf virus]
Length = 1887
Score = 649 bits (1673), Expect = 0.0
Identities = 444/1207 (36%), Positives = 640/1207 (53%), Gaps = 60/1207 (4%)
Frame = +2
Query: 2570 ERLTKFLFRPEHFNCSQFRGRKGAFLTKVDAD--YGHNGMVYPH-------NSWVPSLDE 2722
+ L FRP +G+K ++T +D+ Y HN + YP W+ S E
Sbjct: 692 QSLNALCFRPN-------KGKKSVYVT-LDSPMVYFHNSISYPSIEATGLIKDWILSKAE 743
Query: 2723 IIKICDQGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTS 2902
D G FN AL+ Y+ D LG HKDNE Y + PILTV G+ + S + T
Sbjct: 744 -----DYGVPFNAALVQVYEKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTM 798
Query: 2903 SFIMTAGSFFLMPKGYQKRARHSVRN-TSPRVSVTFRKHVRRLDGSPIAIRKD-NYRNIC 3076
+ +G LMP+ +Q++ RH V++ T R+SVT R H R D S RK + C
Sbjct: 799 E--LDSGDELLMPEDFQRKFRHGVKSITDGRMSVTLRVHER--DFSFEEKRKFIEGKYDC 854
Query: 3077 LISALSNALNRDKQVIIAK-LRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVD 3253
L A++ +++ + I+ K L +++ ++ G + D ++ C I V+ D
Sbjct: 855 LFVAMAAMISKKPEDIMFKCLNTLDRCVMNK------GCDLTDLRSICSGYEIKVECQGD 908
Query: 3254 GKCIVMGEGGLRIS-LALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQ--- 3421
+ +G+ GL + L L+ NHF+ RS + + + K ++ G+D ++
Sbjct: 909 CGLVEIGDIGLPLGKLILRGNHFTLCSKRRSNLDSLAN--SSKDVSSLSGGIDYVMVNFI 966
Query: 3422 ---KDICAGVNYIQFAADYENARTLANSFLNMTTGIC----------------------- 3523
+ I ++ + D + L + TGI
Sbjct: 967 KRLRSIEPDLSRSEIKVDIKRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRS 1026
Query: 3524 -LGRV---LDGGEKYFTHMLEERPKQIGFD---VTAICGFAGSGKSRQLQSWLHSRKKGN 3682
+G + +DG EK + L +++ F + I GFAGSGKS +Q+ + +G+
Sbjct: 1027 LIGAMRGNVDGMEK---NKLLNELEELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGS 1083
Query: 3683 --FCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYL 3856
+V PR LA DWS K E+ + TFES +K D + ILDE+TL P G+
Sbjct: 1084 QGLMIVCPRKFLAKDWSEK----GVEEMDIRTFESALKSDIKGKRVFILDEVTLLPRGFT 1139
Query: 3857 DLLVYELH-EFNAHCKVIL-LFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSH 4030
DLL+ ++H E N I+ L DPLQA Y ++ D+ L+ E + RL ++Y + SH
Sbjct: 1140 DLLLMKIHMEGNLKSSTIICLGDPLQASYFSQKDDSYLEREPEVKRLFK-DGVEYKWFSH 1198
Query: 4031 RMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVESDLEKKAF 4210
R+++F R + N Q I+ D+ S + +++LV S +EK+ +
Sbjct: 1199 RVNKFTARQLSITTTNTFPGIDSQSQ-IYGDVQSAICSIQKTGIDVEIILVASMIEKELY 1257
Query: 4211 SPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTFLGGIDEF 4390
+ +TFGESQGLTF + MVA+TR SF G DE+
Sbjct: 1258 CNLGRTITFGESQGLTFGVGVVVLSEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEY 1317
Query: 4391 KVRKGESLVTSILQSEMITFDRL--NMMVKCNLVRNEKKNGCS-DEVDREERLEGDPFLK 4561
L++ + + + D + + VK NL K G DE+DREERL GDP+LK
Sbjct: 1318 MRGMKNGLLSRLTSNSGASKDFIMSSSSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLK 1377
Query: 4562 PFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLV 4741
IFLG+R R + HL I N L +R +E RE++
Sbjct: 1378 SQIFLGKRFHLREPLGQVVNLEDSAIKCHLPICN-NQTLYVELSKMRAREDREFKGKDGW 1436
Query: 4742 TNQFCDSYDKAHINGKR--ETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQ 4915
+ QF ++A N K + PM F+AIYP+H DDD+TF+ A++KRL F NY
Sbjct: 1437 SKQF---REEAGPNWKSPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVANNYA 1493
Query: 4916 RLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDID 5095
+ ++ G L + F + + L+ S +Q+LL + FE+ KL KS TI +HS RSD D
Sbjct: 1494 KFKQSQSRGQYLLKVFLEHVNLKPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPD 1553
Query: 5096 WALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEE 5275
W L+ +FLFMKSQLCTK+EK+F DAKAGQTLACFQH ILV+F+PWCRY+E + P+
Sbjct: 1554 WPLDRIFLFMKSQLCTKFEKRFEDAKAGQTLACFQHRILVEFSPWCRYVEKILTACTPDN 1613
Query: 5276 IYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVID 5455
YIH KNF +L + K+F ICVESDY AFD SQD IL+FEV L++ + +K+++
Sbjct: 1614 FYIHQRKNFSELENFAKRFSDGSICVESDYTAFDVSQDHTILAFEVELLRFIGWDEKILN 1673
Query: 5456 AYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCA 5635
+YI +KC LGC+LG F+IMRFTGEF TFLFNTLANMAFT CRYE ++G PI FAGDDMCA
Sbjct: 1674 SYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCA 1733
Query: 5636 LNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGK 5815
L NL + + + LSLKAKV RT PMFCGWRL G++KEP L+Y R VAIE G+
Sbjct: 1734 LRNLREVSTHEHILDKLSLKAKVNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGR 1793
Query: 5816 VLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQ 5995
+L+ +++Y +E S+AY L ERL++ L+ E Q+ YHQ + RF V + L+ R+ E
Sbjct: 1794 LLDVIDSYYLEFSFAYKLGERLFQYLEIE-QLNYHQVLARFFVKNSHLLRGSAREGISEL 1852
Query: 5996 S--SDED 6010
S SD D
Sbjct: 1853 SWLSDGD 1859
Score = 166 bits (419), Expect = 2e-37
Identities = 119/409 (29%), Positives = 198/409 (48%), Gaps = 10/409 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I N + + E R F+Y+L K+ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPEKTKEWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P + HSHP K ENHIL++I+ ++ I C SIK +K+ + + + +++
Sbjct: 64 PFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIACLSIKANKMSKMERMGAHSVKNYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
NRL+ S+D SRY + GS F
Sbjct: 124 -------------FNRLVTSRDKSRYGDLTQPTRVGGPKGSNYF---------------I 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ +FL K R T+V+PPE+L+ + +S P +Y+F++DKG L + P
Sbjct: 156 HDEIHYWSRTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSAS--HLKSGD---HTWTVTRHKSIYAHHLFEVSAG-ELVTD 949
DG ++E+Y Q + +L S + K+ D ++VT ++ +HH+F + L+ D
Sbjct: 216 DGSRSESYTQSIENGYLLSTNCISFKNKDGLRKQYSVTLVYTLGSHHVFHIFPNMGLIED 275
Query: 950 SKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 1126
F Y D+ +F R + FP++ K++ Y+ LKKPD +S +AKLRQ+
Sbjct: 276 EIRRFGPYDLFDVGTLFKKPVRVPIQGFPLST--FKKIFIYMSSLKKPDEQSAVAKLRQL 333
Query: 1127 IGDDVEIKEFLFFEQFCKRLIERQ--TSWGLFGHSFFNKLTDMALSGMP 1267
++ I+ ++F KR IE+ SW SFF+ L D +P
Sbjct: 334 CDAEISIEAVFLIQEFAKR-IEKGGILSWSC---SFFDYLKDHFFDKIP 378
>gb|AGK63259.1| replicase [Cherry mottle leaf virus]
Length = 1887
Score = 643 bits (1659), Expect = 0.0
Identities = 432/1153 (37%), Positives = 616/1153 (53%), Gaps = 48/1153 (4%)
Frame = +2
Query: 2666 YGHNGMVYPHNSWVPSLDEII--KICDQGDEFNCALINFYDSDSSLGFHKDNEKVYNDDP 2839
Y HN + YP + E I K D G FN AL+ Y+ LG HKDNE Y + P
Sbjct: 718 YFHNSISYPSMEASGLIKEWILKKADDYGVPFNAALVQVYEKGCILGMHKDNESCYGNHP 777
Query: 2840 ILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSP-RVSVTFRKH 3016
ILTV GE S + T + +G LMP+ +Q++ RH VR+ S R+SVT R H
Sbjct: 778 ILTVNVSGEATFSTDCCGNTIE--LKSGDELLMPENFQRKFRHGVRSDSDGRMSVTLRVH 835
Query: 3017 VRRLDGSPIAIRKD-NYRNICLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGNGGS 3193
R D S RK + + CL A++ +++ + ++ LR +N R + + G
Sbjct: 836 ER--DFSFEEKRKFVDKKYDCLFIAIAEMISKKPEEVM--LRCLNT--LDRCIMN-KGCD 888
Query: 3194 IEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHFSAVEGHRSMQRTFVSHL 3370
+ D ++ C I V+ D I +G+ GL + L L+ NHFS RS + + +
Sbjct: 889 LTDLRSICNGYEIKVECQGDCGLIEVGDTGLPLGKLLLRGNHFSLCSKRRSNLDSLANSM 948
Query: 3371 AKKGNLNVLEGLDAML------QKDICAGVNYIQFAADYENARTLANSFLNMTTGIC--- 3523
+ +L GLD ++ K I ++ + D + L + TGI
Sbjct: 949 KEVSSL--AGGLDYVMFNFIKRLKLIEPDISISETKVDIKRGGKLLKCLMEGLTGIVSHN 1006
Query: 3524 ---------------------LGRV---LDGGEKYFTHMLEERPKQIGFD---VTAICGF 3622
+G + +DG EK + L +++ F + I GF
Sbjct: 1007 STHDGWRLLKGVKNSSDMRSLIGAMRGNVDGIEK---NKLLSELEELNFQKVPIYGIFGF 1063
Query: 3623 AGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMD 3796
AGSGKS +Q+ + +G+ VV PR LA DWS K E+ + TFES +K D
Sbjct: 1064 AGSGKSHTIQNLISKEFRGSQGLMVVCPRKFLAKDWSEK----GVEEMDIRTFESALKSD 1119
Query: 3797 KCKLDLIILDELTLFPNGYLDLLVYELH-EFNA-HCKVILLFDPLQARYHNRMDELILKF 3970
+ ILDE+TL P G+ DLL+ ++H E N + +I L DPLQA Y ++ D+ L+
Sbjct: 1120 IKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKNSTIICLGDPLQASYFSQKDDSYLER 1179
Query: 3971 EHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICI 4150
E + RL + ++Y + SHR+++F + + N Q I+ D+ S +
Sbjct: 1180 EAEVKRLFP-EGVEYKWFSHRINKFVAKQLSIQTTNPFAGIDGQSQ-IYGDVQSAICSIR 1237
Query: 4151 DRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVAL 4330
+++LV S +EK+ ++ + +TFGESQGLTF I MVA+
Sbjct: 1238 KTGVEVEIILVASMIEKELYNNLGRTITFGESQGLTFGVGVIVLSEETKLCSDAHIMVAI 1297
Query: 4331 TRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRL--NMMVKCNLVRNEKKN 4504
TR SF G DE+ L++ + + + D + + VK NL K
Sbjct: 1298 TRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFILSSSSVKLNLSEKLIKK 1357
Query: 4505 GCS-DEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLC 4681
G DE+DREERL GDP+LK I+LG+R R + HL I L
Sbjct: 1358 GAGIDEMDREERLSGDPWLKTQIYLGKRFHLREPLGQVCNLEDSAIKCHLPICNSQT-LY 1416
Query: 4682 YNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTF 4861
++ +E RE++ + QF + + + + PM F+AIYP+H DDD+TF
Sbjct: 1417 VELSNMKAREDREFKGKDGWSKQFREEAGP-NWSSPYKIAQPMNFEAIYPRHRMDDDITF 1475
Query: 4862 WMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKK 5041
+ A++KRL F NY + ++ G L + F + + L S +Q+LL + FE+ K
Sbjct: 1476 YAAIKKRLRFDNVASNYVKFKQSQSRGQYLLKVFLEHIELRPSRNQALLNQCRQEFEETK 1535
Query: 5042 LEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 5221
L KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F DAKAGQTLACFQH ILV+F
Sbjct: 1536 LNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRFEDAKAGQTLACFQHRILVEF 1595
Query: 5222 APWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYIL 5401
+PWCRY+E + +PE YIH KNF +L + K+F CVESDY AFD SQD IL
Sbjct: 1596 SPWCRYVEKILSACMPENFYIHQRKNFSELESFAKRFSDGSTCVESDYTAFDVSQDHTIL 1655
Query: 5402 SFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCR 5581
+FEV L++ + + ++++YI +KC LGCKLG F+IMRFTGEF TFLFNTLANMAFT CR
Sbjct: 1656 AFEVELLRYVGWDESILNSYIKMKCTLGCKLGGFAIMRFTGEFSTFLFNTLANMAFTFCR 1715
Query: 5582 YEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIV 5761
YE ++G PI FAGDDMCAL NL + + E LSLKAKV RT PMFCGWRL G++
Sbjct: 1716 YEVKKGTPICFAGDDMCALRNLREMSKHEHILEKLSLKAKVNRTTVPMFCGWRLCQDGLI 1775
Query: 5762 KEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI 5941
KEP L+Y R VAIE G++L+ +++Y +E S+AY L ERL++ L+ Q+ YHQ + RF
Sbjct: 1776 KEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERLFQYLEI-GQLNYHQVLARFS 1834
Query: 5942 VTHIDKLKTKVRD 5980
V + L+ R+
Sbjct: 1835 VKNSHLLRGSARE 1847
Score = 165 bits (418), Expect = 3e-37
Identities = 114/406 (28%), Positives = 195/406 (48%), Gaps = 9/406 (2%)
Frame = +2
Query: 77 KTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELYPN 256
+T E +L + + I N + + E R F+Y+L K+ +K G+ L P
Sbjct: 6 RTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPEKTKEWFTKSGVYLSPF 65
Query: 257 GYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNLED 433
+ HSHP K ENHIL++++ ++ + C SIK +K+ + + R +++
Sbjct: 66 SFEVHSHPGCKTLENHILYNVVAPNISKYPYVACLSIKANKMSKMERMGAHSVRNYDI-- 123
Query: 434 QSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFFHD 613
NRL+ S+D SRY + GS F HD
Sbjct: 124 -----------FNRLVTSRDKSRYGDLTQPSRIGGPKGSNYF---------------IHD 157
Query: 614 EVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFPDG 793
E+H+W++ Q+ +FL K R T+V+PPE+L+ + +S P +Y+F++DKG L + PDG
Sbjct: 158 EIHYWSRPQLETFLDLKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDG 217
Query: 794 VKTEAYEQKLNMEWLFSAS--HLKSGD---HTWTVTRHKSIYAHHLFEVSAG-ELVTDSK 955
++E+Y Q + +L S + K+ D ++V+ ++ +HH+F + L+ D
Sbjct: 218 SRSESYTQSIENGYLLSTNCISFKNKDGVRKQYSVSLVYTLGSHHVFHIFPNLGLIEDEV 277
Query: 956 LFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIG 1132
F Y D+ +F R + FP++ K++ Y+ LKKPD +S +AKLRQ+
Sbjct: 278 RRFGPYDLFDVGSLFKKPVRVPIQGFPLST--FKKIFIYMSSLKKPDEQSAVAKLRQLCD 335
Query: 1133 DDVEIKEFLFFEQFCKRLIERQT-SWGLFGHSFFNKLTDMALSGMP 1267
++ I+ ++F KR+ + SW SFF L D +P
Sbjct: 336 SEISIEAVFLIQEFAKRIEKGGVLSWSC---SFFEYLKDHFFDKIP 378
>ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi|75266362|gb|ABA18636.1|
putative polyprotein [Peach mosaic virus]
Length = 1886
Score = 634 bits (1634), Expect = e-178
Identities = 429/1182 (36%), Positives = 625/1182 (52%), Gaps = 55/1182 (4%)
Frame = +2
Query: 2618 QFRGRKGAFLTKVDAD-YGHNGMVYPHNSWVPSLDEII--KICDQGDEFNCALINFYDSD 2788
+ GR+ ++ A Y HN + YP + + I K D FN AL+ Y D
Sbjct: 702 ELNGRRAMYVCLDSAMVYFHNTISYPSIEAHGKIKDWILRKAKDYDVPFNAALVQVYRKD 761
Query: 2789 SSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARH 2968
++G HKDNE Y ++PILTV G + S + + + G LMP +Q++ RH
Sbjct: 762 YTMGMHKDNEACYGEEPILTVNAFGSAVFSTDCCNNVIN--LEDGDELLMPAKFQRKFRH 819
Query: 2969 SVRNTSP-RVSVTFRKHVRRLDGSPIAIRKD-NYRNICLISALSNALNRDKQVIIAKLRS 3142
V++ S RVS+T R H R D S RK N + CL A+S +++ + ++ +
Sbjct: 820 GVKSLSEGRVSITLRVHSR--DFSFEEKRKFVNGKFDCLFDAVSKLISKKSEEVMIR--- 874
Query: 3143 VNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHF 3319
N R + + G ++D ++ C I V+ D + +G G+ + L+ NHF
Sbjct: 875 -NPHILDRCIMN-RGCDLDDLRSICNNYEIKVECQGDCGLLEVGSIGMPLGRFMLRGNHF 932
Query: 3320 SAVEGHRS---------------------MQRTFVSHL-AKKGNLN-------------- 3391
S RS +Q F+ L A + +LN
Sbjct: 933 SLCSKRRSNLDSLANSVKDVSVSSCGIDYVQMKFLDRLRAIEPDLNSTKVKVDIRRGGKL 992
Query: 3392 ---VLEGLDAMLQKDICA-GVNYIQFAADYENARTLANSFLNMTTGICLGRVLDGGEKYF 3559
++EGL ++ + G ++ + + R+L ++ + GI ++++
Sbjct: 993 LKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLVSAMRGSSAGIEKNKLMEE----- 1047
Query: 3560 THMLEERPKQIGFDVTAICGFAGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFK 3733
LEE Q + I GFAGSGKS +Q + +G+ VV PR LA DWS K
Sbjct: 1048 ---LEELNFQ-QVSIHGIFGFAGSGKSHAIQDLISKEFRGSQGLMVVCPRKFLAKDWSEK 1103
Query: 3734 LELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELH-EFNAH-CKVI 3907
+ + + TFES +K D + ILDE+TL P G+ DLL+ ++H E N ++
Sbjct: 1104 ----GVDDQDIKTFESALKSDLKGKRVFILDEVTLLPRGFTDLLMMKIHMEGNLKKSTIV 1159
Query: 3908 LLFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAE 4087
L DPLQA Y ++ DE L+ E + RL + ++Y + S+R++RF R + N+
Sbjct: 1160 CLGDPLQASYFSQKDESYLEREPEVKRLFP-EGVEYKWFSYRINRFVARQLSITTRNEFP 1218
Query: 4088 TTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNH 4267
Q ++ D+ S + +V+LV S +EK+ + + MTFGESQGLTF
Sbjct: 1219 GIDNQSQ-VYGDVPSAIHSIQKSGVKVEVILVASMIEKELYCNLCQTMTFGESQGLTFGV 1277
Query: 4268 VCIXXXXXXXXXXXXRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMIT 4447
I MVA+TR S+ G +E+ L++ + S +
Sbjct: 1278 GIIVLSEEAKLCSDAHIMVAVTRFNRGFSYALGSKGTKEEYMRGIKNGLLSRLCSSIGAS 1337
Query: 4448 FDRLNMMVKCNLVRNEK---KNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXX 4618
D + L +EK K DE+DREERL GDP+LK IFLG+R R
Sbjct: 1338 KDFILSSSPIPLNFSEKMIQKGAGLDEMDREERLSGDPWLKTQIFLGKRFHLREPLGQVC 1397
Query: 4619 XXXXPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGK--R 4792
+ H+ ++ L ++ +E RE++ +NQF ++A N K
Sbjct: 1398 QIEDSAIKCHVPLSNQQT-LYVELSRMKAREDREFKGRDGWSNQF---REEAGPNWKFPY 1453
Query: 4793 ETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQK 4972
+ PM F+AIYP+H DDD+TF+ A++KRL F NY + ++ G L Q F +
Sbjct: 1454 KVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDSVANNYTKFKQSQSRGQYLLQVFLKH 1513
Query: 4973 MGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYE 5152
+ L+ S +Q+LL + FE+ KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+E
Sbjct: 1514 VDLKPSRNQALLNQCKQEFEETKLSKSAATIGAHAQRSDPDWPLDRIFLFMKSQLCTKFE 1573
Query: 5153 KQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKF 5332
K+F DAKAGQTLACFQH ILV+F+PWCRY+E + + LPE YIH KNF +L + K++
Sbjct: 1574 KRFEDAKAGQTLACFQHKILVEFSPWCRYVEKILTSCLPENFYIHQRKNFSELEAFAKRY 1633
Query: 5333 FQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIM 5512
+CVESDY AFD SQD IL+FEV L++ + + V+++YI +KC LGC+LG F+IM
Sbjct: 1634 SDGSVCVESDYTAFDVSQDHTILAFEVELLRYIGWDEAVLNSYIKMKCTLGCRLGGFAIM 1693
Query: 5513 RFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSL 5692
RFTGEF TFLFNTLANMAFT CRYE ++G PI FAGDDMCAL NL + + LSL
Sbjct: 1694 RFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREIASHEHILNKLSL 1753
Query: 5693 KAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLS 5872
KAKV RT PMFCGWRL G++KEP L+Y R VAIE G++L+ +++Y +E S+AY L
Sbjct: 1754 KAKVNRTNVPMFCGWRLCQDGLIKEPCLIYERLNVAIENGRLLDVIDSYYLEFSFAYKLG 1813
Query: 5873 ERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQS 5998
ERL++ L+ E Q+ YHQ + RF V + L+ R + S
Sbjct: 1814 ERLFQYLEIE-QLNYHQVLTRFFVKNSHLLRGGARKSVFQNS 1854
Score = 164 bits (414), Expect = 9e-37
Identities = 118/409 (28%), Positives = 200/409 (48%), Gaps = 10/409 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I N + + E R F+Y+L K+ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPDKTKEWFTKAGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P + HSHP K ENHIL++I+ ++ I C SIK +K+ + + + +++
Sbjct: 64 PFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIACLSIKANKMSKMERMGPHSVKNYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
INRL+ S+D SRY D S G + S N+ F
Sbjct: 124 -------------INRLVTSRDKSRY---GDLTEPSRVGGPK--STNY----------FI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+WT+ Q+ +FL+ + T+V+PPE+L+ + NS P +Y F+++ + F P
Sbjct: 156 HDEIHYWTRKQLETFLELKSPKNLWVTMVFPPEILKGYKNSVLPFLYKFEIEGDNMVFMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSASHLKSGD-----HTWTVTRHKSIYAHHLFEVSAG-ELVTD 949
DGV++E+Y Q + +L S + + D ++VT ++ +HH+F + + D
Sbjct: 216 DGVRSESYTQPIENGYLLSTNCISFTDSNKRKRQYSVTLVYTLGSHHVFHIFPKLGTMED 275
Query: 950 SKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 1126
F Y D+ +F R + FP++ K++ YL LKKPD +S +AKLRQ+
Sbjct: 276 EVRRFGPYDLFDVGVLFKQPVRVPIQDFPLST--FKKIFIYLSSLKKPDEQSAVAKLRQL 333
Query: 1127 IGDDVEIKEFLFFEQFCKRLIERQ--TSWGLFGHSFFNKLTDMALSGMP 1267
+++ + ++F +R +E+ SWG SFF+ L D +P
Sbjct: 334 CDNEISFEAVALIQEFARR-VEKGGIQSWGC---SFFDYLKDFFFDKIP 378
>gb|ABY71563.1| polymerase [Apple chlorotic leaf spot virus]
Length = 1880
Score = 632 bits (1630), Expect = e-178
Identities = 427/1194 (35%), Positives = 624/1194 (52%), Gaps = 63/1194 (5%)
Frame = +2
Query: 2618 QFRGRKGA-FLTKVDADYGHNGMVYPHNSWVPSLDEII--KICDQGDEFNCALINFYDSD 2788
Q +GR+ A F Y H+ + Y L ++ D G FN AL+ Y++
Sbjct: 696 QIKGRRAAYFCLDYPMIYFHDKISYKTFEATGELKRVMIKARSDWGINFNSALVQIYEAG 755
Query: 2789 SSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARH 2968
+ L HKD+E+ Y+DD +LT+ GE S + + ++ G+ LMP GYQK+ RH
Sbjct: 756 TKLPLHKDDEECYDDDGVLTINVVGEASFSTTCHDEIT--LLKEGNELLMPSGYQKKFRH 813
Query: 2969 SVRNTSP-RVSVTFRKHVRRLD-GSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLRS 3142
+V+ S R+SVT R H R + S + K Y CL ++ +++ + +++ L
Sbjct: 814 AVKVLSEGRISVTLRVHKRDFNFESKVKFIKGRYD--CLFECIAEIIHKKPEEVMSLLPH 871
Query: 3143 VNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHF 3319
V R +S+ G SI+D +A C+ I ++ D + G GL I + L+ NHF
Sbjct: 872 V----LDRCVSN-KGCSIDDLKAICDKYEIKIECEGDCGLVECGSQGLSIGRMNLRGNHF 926
Query: 3320 SAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQK------DICAGVNYIQFAADYENAR 3481
RS + VS K + LD ++ + + D A
Sbjct: 927 RVASIRRS---SIVSLANSKKEIKSTGSLDHVMINFKKRLLQVETDITKASIKVDLIRAG 983
Query: 3482 TLANSFLNMTTGICLG-------RVLDG----------------GEKYFTHMLEERPKQI 3592
L S ++ TGI R+++G + ++ L +R ++
Sbjct: 984 KLLKSLMDGMTGIVSHNSTHEGWRIINGINSTAEMRAFMKMIKKDDDKESNFLSDRVGEL 1043
Query: 3593 GFD---VTAICGFAGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEK 3757
F+ ++ I GFAGSGKS +Q+ +++ KG+ V+ PR LA DWS K ++
Sbjct: 1044 EFERKEISGIFGFAGSGKSHAIQNLIYNEFKGSQGIMVICPRRFLAKDWSEK----GVDE 1099
Query: 3758 RKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNA--HCKVILLFDPLQA 3931
+ + TFES +K D L ILDE+TL P G++DLL+ ++H + V+ L DPLQA
Sbjct: 1100 KDIKTFESALKSDIKGKRLFILDEVTLLPRGFVDLLLLKMHMEGVFRNSTVVCLGDPLQA 1159
Query: 3932 RYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLW 4111
Y ++ D+ L +++ RL + Y + S+R+++F + +VP N+ EQ
Sbjct: 1160 GYFSQRDDSYLARDNEIKRLFPN-GVNYKWYSYRINKFIGKKINVPSLNEFIGIDEQSA- 1217
Query: 4112 IFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXX 4291
I+ D+ S +V+LV S +EK+ +S VMTFGESQGLTF + I
Sbjct: 1218 IYKDMPSAFHFLDKGGNHPEVILVASMIEKELYSNYGMVMTFGESQGLTFGNGIIVLSEE 1277
Query: 4292 XXXXXXXRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQ------SEMITFD 4453
MVA+TR + F G +++ +S+ + +LQ F
Sbjct: 1278 AKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYM----KSMKSGLLQRMCSGLGASQEFI 1333
Query: 4454 RLNMMVKCNLVRNEKKNGCS-DEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXX 4630
VK +L + ++G DE+DREERL+GD +LK I+LG+R
Sbjct: 1334 LNTSPVKLHLSKKAIESGAGIDEMDREERLQGDVWLKSMIYLGKRFHLVEPLGQVVSLVD 1393
Query: 4631 PRCQTHLYI-TEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP 4807
+ H+ + +E G + + +E RE++ + QF RE GP
Sbjct: 1394 SAIKCHIPVCSEQTLGP--ELEKVWAREHREFKGKNGWSCQF------------REEAGP 1439
Query: 4808 -----------MRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLY 4954
M +AIYP+H DDD+TF A++KRL F N + A G L
Sbjct: 1440 KWMVPYKINQAMSHEAIYPRHRMDDDLTFLAAIKKRLRFDSVANNMAKFKAAESRGKYLA 1499
Query: 4955 QNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQ 5134
+ F + + ++ DQ LL+ FE+ KL KS TI +HS RSD DW L+ +FLFMKSQ
Sbjct: 1500 KIFLKHVPIKSGRDQRLLDACRQEFEETKLSKSAATIGAHSQRSDTDWPLDKIFLFMKSQ 1559
Query: 5135 LCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLN 5314
LCTK+EK+F +AKAGQTLACF H ILV+F+PWCRY E + LP+ YIH KNF +L
Sbjct: 1560 LCTKFEKRFTEAKAGQTLACFPHRILVEFSPWCRYTEKILSANLPDNFYIHQRKNFSELE 1619
Query: 5315 KWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKL 5494
+ K++ +CVESDY AFD SQD IL+FEV L++ + +K++ +YI +KC LGC+L
Sbjct: 1620 TFAKRYSNGSVCVESDYTAFDVSQDHTILAFEVELLRHFGWDEKILQSYIKMKCTLGCRL 1679
Query: 5495 GHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDL 5674
G F+IMRFTGEF TFLFNTLANM FT CRY G PI FAGDDMCAL NL D + +
Sbjct: 1680 GGFAIMRFTGEFSTFLFNTLANMVFTFCRYRVPDGTPICFAGDDMCALRNLKETEDHELI 1739
Query: 5675 FELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVS 5854
LSLKAKV RT+ PMFCGWRL G++KEP L+Y R QVAIE ++++ +++Y +E S
Sbjct: 1740 LNKLSLKAKVNRTKVPMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMDVIDSYFLEFS 1799
Query: 5855 YAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLY--IEQSSDED 6010
+AY L ERLY L+ E Q+ YHQ + RF V + L+ R+ +E SDED
Sbjct: 1800 FAYKLGERLYSHLEIE-QLNYHQVLTRFFVKNKHLLRGDSRNSISELEWLSDED 1852
Score = 161 bits (408), Expect = 4e-36
Identities = 107/408 (26%), Positives = 196/408 (48%), Gaps = 9/408 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + + + I E + +F+Y L ++ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQSQQEILGKFQFERIEKEEEKKVANFSYFLPEKTREWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P Y HSHP K ENH+LF+++ S ++ + C SIK +K+ + + + +++
Sbjct: 64 PFAYETHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMERLGASSVKTYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
+NRL+ +KD +RY + K +F
Sbjct: 124 -------------LNRLVTAKDKARYGP---------------LVSEVRAPCPKKTNIFI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ +FL K + T+V+PPE+L + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWSRKQLENFLMINKPKNLWATLVFPPEILAGYRSSVLPFLYQFEISGKDLIYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSAS------HLKSGDHTWTVTRHKSIYAHHLFEV-SAGELVT 946
DGV++E+Y Q L +L S++ H K + + ++ S+ +HHLF + +L+
Sbjct: 216 DGVRSESYTQPLENGYLLSSNSIIIFDHCKKKEIRYQISLIYSLGSHHLFHIFPCQDLMK 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP+++ K++ YL LKKPD +S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVRPVRVPIQDFPLSV--FKKIFIYLSSLKKPDEQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMP 1267
+ D+ I+ ++F R+ + G + SF++ + D +P
Sbjct: 334 LSDADISIESVFLVQEFASRI--EKHGLGNWSCSFWDCMKDWFFDKLP 379
>ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus]
gi|137259|sp|P27738.1|RDRP_ACLSP RecName:
Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
protein; AltName: Full=ORF1 protein; AltName: Full=RNA
replicase gi|210294|gb|AAA42587.1| putative [Apple
chlorotic leaf spot virus]
Length = 1884
Score = 631 bits (1628), Expect = e-177
Identities = 429/1187 (36%), Positives = 607/1187 (51%), Gaps = 55/1187 (4%)
Frame = +2
Query: 2615 SQFRGRKGA-FLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQ--GDEFNCALINFYDS 2785
SQ RG+K A F Y H+ + YP + ++ G +FN ALI Y+
Sbjct: 699 SQLRGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIRHVMMKARSKWGIDFNSALIQVYND 758
Query: 2786 DSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRAR 2965
L H DNE+ Y+DD ILT+ G+ + + G+ LMP GYQK+ R
Sbjct: 759 GCRLPLHSDNEECYDDDGILTINVVGDAKFHTTCHDEVID--LKQGNEILMPAGYQKKNR 816
Query: 2966 HSVRNTSP-RVSVTFRKHVRRLD-GSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLR 3139
H+V S R SVT R H R S + K + CL +++ +++ + I+ +
Sbjct: 817 HAVEVASEGRTSVTLRVHKRDFSFESKLRFIKGKFD--CLFVSVAEIIHKKPEEIMMFIP 874
Query: 3140 SVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNH 3316
+ R +S+ G S++D +A CE I ++ D + G GL I + L+ NH
Sbjct: 875 HI----MDRCVSN-RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGNH 929
Query: 3317 FSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICA---GVNYIQFAADYENARTL 3487
FS RS + + + + VL+ + K + + D A L
Sbjct: 930 FSVASVRRSSMDSLANSSKEIKSDGVLDHVTFNFHKRLKLVEPDLTNADIKVDSSRAGKL 989
Query: 3488 ANSFLNMTTGICLGRVLDGGEKY------------FTHMLE---ERPKQIGFD------- 3601
S ++ TGI G + F +M+ E PK FD
Sbjct: 990 LKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMNMVRGQIEEPKSDLFDKVQELNF 1049
Query: 3602 ----VTAICGFAGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEKRK 3763
+ I GFAGSGKS +Q+ + + KG+ V+ PR LA DWS K +++
Sbjct: 1050 MKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGIMVICPRRFLAKDWSEK----GVDEKD 1105
Query: 3764 VATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCK--VILLFDPLQARY 3937
+ TFES +K D L ILDE++L P G+ DLL+ ++H K ++ + DPLQA Y
Sbjct: 1106 IKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGY 1165
Query: 3938 HNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIF 4117
D+ L E + RL G + Y + S+R+++F + + N EQ I+
Sbjct: 1166 FCPKDDNYLSREGEIKRLFKG-GVNYKWYSYRINKFIAKKLAIETMNDFIGIDEQSS-IY 1223
Query: 4118 DDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXX 4297
D+ S + +V+LV S +EK+ +S NVMTFGESQGLTFN I
Sbjct: 1224 KDMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAK 1283
Query: 4298 XXXXXRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKC 4477
MVA+TR + F G +++ L+ I + + +
Sbjct: 1284 LCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASKEFILGSSSV 1343
Query: 4478 NLVRNEK---KNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTH 4648
NL+ +EK K DE+DRE RLEGD +LK I+LG+R + H
Sbjct: 1344 NLILSEKDIAKGAGIDEMDREARLEGDVWLKSMIYLGKRYHMVEPLGQVIKLTDDAIKCH 1403
Query: 4649 LYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP------- 4807
+ + L D I+ +E RE++ +NQF RE GP
Sbjct: 1404 IPVCSSQT-LGPELDNIQAREYREFKGKNGWSNQF------------REEAGPNWKFPYK 1450
Query: 4808 ----MRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKM 4975
M ++A+YP+H DDD+TF A++KRL F NY + A G L + F + +
Sbjct: 1451 VNQAMSYEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLTKIFLKHV 1510
Query: 4976 GLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEK 5155
++ DQ LL++ FE+ KL KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK
Sbjct: 1511 PIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEK 1570
Query: 5156 QFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFF 5335
+F +AKAGQTLACF H ILV+F+PWCRY E + LP+ YIH KNF +L + ++F
Sbjct: 1571 RFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFARRFS 1630
Query: 5336 QRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMR 5515
ICVESDY AFD SQD IL+FEV L++ + +V+ +YI +KC LGC+LG F+IMR
Sbjct: 1631 NGSICVESDYTAFDVSQDHTILAFEVELLRHFGWDDRVLQSYIKMKCTLGCRLGGFAIMR 1690
Query: 5516 FTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLK 5695
FTGEF TFLFNTLANM FT CRYE G PI FAGDDMCAL NL + + LSLK
Sbjct: 1691 FTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILSKLSLK 1750
Query: 5696 AKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSE 5875
AKV RT+ PMFCGWRL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY L E
Sbjct: 1751 AKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGE 1810
Query: 5876 RLYEVLKSERQIQYHQAVVRFIV--THIDKLKTKVRDLYIEQSSDED 6010
RLY L+ E Q+ YHQ + RF + H+ + ++ +E SDED
Sbjct: 1811 RLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1856
Score = 165 bits (418), Expect = 3e-37
Identities = 110/405 (27%), Positives = 198/405 (48%), Gaps = 15/405 (3%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I + I E + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSFYLPEKTREWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P YV HSHP K ENH+LF+++ S ++ + C SIK +K+ + + + +++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSNKMSKMERLGPNSVKTYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
+NRL+ +KD +RY A S K +F
Sbjct: 124 -------------LNRLVTAKDKARYGPLAKPERSP---------------CPKKTNIFI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ +FL+ + + T+V+PPE+L + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWSRDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSAS------HLKSGDHTWTVTRHKSIYAHHLFEV-SAGELVT 946
DGV++E+Y Q L +L S+S + + + V+ S+ +HHLF + A +L+
Sbjct: 216 DGVRSESYTQPLENGFLLSSSSIIIKNRVTGVEIRYQVSLVYSLGSHHLFHIYPAEDLMK 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP+++ K++ Y+ LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRLIERQTS------WGLFGHSFFNKL 1240
+ D+ I+ ++F R+ + WG FF+KL
Sbjct: 334 LSDADISIESVFMIQEFASRIEKNGVESWSCSFWGCMKDWFFDKL 378
>dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1877
Score = 625 bits (1613), Expect = e-176
Identities = 426/1172 (36%), Positives = 616/1172 (52%), Gaps = 57/1172 (4%)
Frame = +2
Query: 2666 YGHNGMVYP-HNSWVPSLDEIIKICDQ-GDEFNCALINFYDSDSSLGFHKDNEKVYNDDP 2839
Y H+ + YP + P II ++ G +FN AL+ Y+ +L HKDNE+ Y+DD
Sbjct: 710 YFHDKVSYPTFEATGPIKQAIINAKNKWGIDFNSALVQVYEDGCNLPLHKDNEECYDDDG 769
Query: 2840 ILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSP-RVSVTFRKH 3016
ILT+ G+ + + G+ LMP G+QKR +H+V+ S R SVT R H
Sbjct: 770 ILTINVCGDAKFHTTCHDEIID--LKQGNEILMPAGFQKRNKHAVQVISEGRTSVTMRVH 827
Query: 3017 VRRLDGSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSI 3196
R ++ R CL S+++ +++ + ++A + + R +S+ G SI
Sbjct: 828 KRDFSFES-KVKFVKGRLDCLFSSIAEVIHKKPEEVMAFVPHI----LDRCISN-KGCSI 881
Query: 3197 EDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHFSAVEGHRSMQRTFVSHLA 3373
+D +A CEA I ++ D + G GL + L L+ NHF S++R+ + LA
Sbjct: 882 DDARAICEAYEIKIECEGDCGLVECGSVGLSVGRLLLRGNHFRVA----SVRRSSIDSLA 937
Query: 3374 KKGNLNVLEG-LDAML------QKDICAGVNYIQFAADYENARTLANSFLNMTTGICLGR 3532
G LD ++ K + +N ++ + E A L S ++ TGI
Sbjct: 938 NSSKEIKANGVLDHVMFNFHDRLKAVEPDLNSVEVKVNLERAGKLLKSLMDGMTGIVSHN 997
Query: 3533 VLDGGEKY------------FTHMLE-----------ERPKQIGF---DVTAICGFAGSG 3634
G + F M++ E+ + + F + I GFAGSG
Sbjct: 998 STHEGWRMIKGINSTSEMRSFMKMIKDDDSNEKNEVSEKLQGLNFFKKKIYGIFGFAGSG 1057
Query: 3635 KSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKL 3808
KS +Q+ +HS K + VV PR LA DWS E NEK + TFES +K D
Sbjct: 1058 KSHAIQNLIHSEFKNSQGILVVCPRKFLAKDWS---EKGVNEK-DIKTFESALKSDIKGK 1113
Query: 3809 DLIILDELTLFPNGYLDLLVYELHEFNAH--CKVILLFDPLQARYHNRMDELILKFEHDT 3982
L ILDE++L P G+ DLL+ +LH ++ + DPLQA Y D+ L + +
Sbjct: 1114 RLFILDEVSLLPKGFTDLLMLKLHMDGVLKVSTIVCIGDPLQAGYFCPKDDGYLSKDGEI 1173
Query: 3983 DRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDE 4162
RL + ++Y + S+R++RF + + N T +Q+ I+ D+ S + +
Sbjct: 1174 TRLFK-EGVKYKWYSYRINRFMAKKLGISTMNDF-TGIDQQSLIYKDMPSAQHFLREGNN 1231
Query: 4163 PCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRAK 4342
+V+LV S +EK+ +S NVMTFGESQGLTFN I MVA+TR +
Sbjct: 1232 HPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCSDAHVMVAITRFR 1291
Query: 4343 TRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEK---KNGCS 4513
F G +++ L+ + + + + LV +EK K
Sbjct: 1292 RGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILNSSSVKLVLSEKDVAKGAGI 1351
Query: 4514 DEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNFD 4693
DE+DRE RLEGD +LK I+LG+R + H+ + L +
Sbjct: 1352 DEMDREVRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTESAIKCHIPVCSHQT-LMPELE 1410
Query: 4694 FIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP-----------MRFKAIYPKHS 4840
I+ +E RE++ +NQF RE GP M F+A+YP+H
Sbjct: 1411 KIQAREYREFKGRDGWSNQF------------REEAGPNWKFPYKVNQAMNFEAVYPRHK 1458
Query: 4841 ADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESV 5020
DDD+TF A++KRL F NY +L + G L + F + + ++ DQ LL++
Sbjct: 1459 MDDDLTFLAAIKKRLRFDNVANNYAKLKASENRGKYLAKVFLKHVPIKCGRDQRLLDQCR 1518
Query: 5021 NAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQ 5200
FE+ KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF
Sbjct: 1519 QEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFP 1578
Query: 5201 HLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDA 5380
H ILV+F+PWCRY E + LP+ YIH KNF +L + ++F +CVESDY AFD
Sbjct: 1579 HKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARRFSNGSMCVESDYTAFDV 1638
Query: 5381 SQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN 5560
SQD IL+FEV L++ + + ++ +YI +KC LGC+LG F+IMRFTGEF TFLFNTLAN
Sbjct: 1639 SQDHTILAFEVELLRHFGWDENILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNTLAN 1698
Query: 5561 MAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWR 5740
M FT CRYE G PI FAGDDMCAL NL + + LSLKAKV RT+ PMFCGWR
Sbjct: 1699 MVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHNFILSKLSLKAKVNRTKVPMFCGWR 1758
Query: 5741 LTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYH 5920
L G++KEP L+Y R QVAIE G++++ +++Y +E S+AY L ERLY L+ E Q+ YH
Sbjct: 1759 LCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNYH 1817
Query: 5921 QAVVRFIV--THIDKLKTKVRDLYIEQSSDED 6010
Q + RF + H+ + ++ +E SDED
Sbjct: 1818 QVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1849
Score = 169 bits (428), Expect = 2e-38
Identities = 116/408 (28%), Positives = 201/408 (49%), Gaps = 9/408 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I + I E + ++F++ L K+ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPERTKEWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P YV HSHP K ENH+LF+++ S ++ + C SIK +K+ + + R +++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMERLGPNSVRTYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
+NRL+ SKD +RY A S K +F
Sbjct: 124 -------------LNRLVTSKDKARYGPLATPERSP---------------CPKKTNIFI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ SFL + + T+V+PPE+L + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWSRTQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSASHL-----KSG-DHTWTVTRHKSIYAHHLFEVSAGE-LVT 946
DGV++E+Y Q L +L S+S + K+G + + V+ S+ +HHLF + E L+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVHNKKTGVELRYQVSLVYSLGSHHLFHIFPTEDLLK 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP+++ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMP 1267
+ D+ I+ ++F R+ + G + SF+ + D +P
Sbjct: 334 LSDADISIESVFMVQEFASRI--EKNGVGSWSCSFWECMKDWFFDKLP 379
>gb|AGW07339.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1878
Score = 624 bits (1610), Expect = e-175
Identities = 426/1173 (36%), Positives = 617/1173 (52%), Gaps = 58/1173 (4%)
Frame = +2
Query: 2666 YGHNGMVYPHNSWVPSLDE-IIKICDQ-GDEFNCALINFYDSDSSLGFHKDNEKVYNDDP 2839
Y H+ + YP S+ + II D+ G +FN AL+ Y+ SL H+D+E+ Y+DD
Sbjct: 711 YFHDKVSYPTFEATGSIKQAIISARDKWGIDFNSALVQVYEDGCSLPLHRDDEECYDDDG 770
Query: 2840 ILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSP-RVSVTFRKH 3016
ILT+ G+ + + G+ LMP G+QKR +H+V+ TS R SVT R H
Sbjct: 771 ILTINVCGDAKFHTTCHDEIID--LKQGNEILMPAGFQKRNKHAVQVTSEGRTSVTIRVH 828
Query: 3017 VRRLD-GSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGNGGS 3193
R S + K CL SA++ +++ + ++A + + R +S+ G S
Sbjct: 829 KRDFSFESKVKFVKGKLD--CLFSAVAEVIHKKPEEVMAFVPHI----LDRCISN-RGCS 881
Query: 3194 IEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHFSAVEGHRSMQRTFVSHL 3370
I+D +A CEA I ++ D + G GL + L L+ NHF S++R+ + L
Sbjct: 882 IDDARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHFRVA----SVRRSSIDSL 937
Query: 3371 AKKGNLNVLEG-LDAML------QKDICAGVNYIQFAADYENARTLANSFLNMTTGICLG 3529
A G LD ++ K++ +N + + E A L S ++ TGI
Sbjct: 938 ANSSKEVKANGVLDHVMFNFHERLKEVEPDLNSAEIKVNLERAGKLLKSLMDGMTGIVSH 997
Query: 3530 RVLDGGEKY------------FTHMLE-----------ERPKQIGF---DVTAICGFAGS 3631
G + F M++ E+ +++ F + I GFAGS
Sbjct: 998 NSTHEGWRMIKGINSTSEMRNFMKMIKGDVPDEKCEMLEKVQELNFFKRKIYGIFGFAGS 1057
Query: 3632 GKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCK 3805
GKS +Q+ ++S K + VV PR LA DWS E N+K + TFES +K D
Sbjct: 1058 GKSHAIQNLIYSEFKNSQGVLVVCPRKFLAKDWS---EKGVNDK-DIKTFESALKSDIRG 1113
Query: 3806 LDLIILDELTLFPNGYLDLLVYELHEFNA--HCKVILLFDPLQARYHNRMDELILKFEHD 3979
L ILDE++L P G+ DLL+ +LH ++ + DPLQA Y D+ L + +
Sbjct: 1114 KRLFILDEVSLLPRGFTDLLMLKLHMDGVLKTSTIVCIGDPLQAGYFCPKDDGYLARDGE 1173
Query: 3980 TDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRD 4159
RL + I+Y + S+R+++F + + N T +Q+ ++ D+ S + +
Sbjct: 1174 IMRLFK-EGIRYKWYSYRINKFMAKKLSISTMNDF-TGIDQQSLVYKDMPSAHHFMKEGN 1231
Query: 4160 EPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXXRWMVALTRA 4339
+V+LV S +EK+ +S NVMTFGESQGLTFN I MVA+TR
Sbjct: 1232 NHPEVILVASTIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCSDAHIMVAITRF 1291
Query: 4340 KTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEK---KNGC 4510
+ G +++ L+ + + + + L+ +EK K
Sbjct: 1292 RRGFCXALGSKGSKEDYMRSMKSGLLQRMCSGIGASREFILSSSSVKLILSEKDIAKGAG 1351
Query: 4511 SDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHLYITEPNFGLCYNF 4690
DE+DRE RLEGD +LK I+LG+R + H+ + P L
Sbjct: 1352 LDEMDREARLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTDGAIKCHIPVCSPQT-LMPEL 1410
Query: 4691 DFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP-----------MRFKAIYPKH 4837
+ I+ +E RE++ +NQF RE GP M F+A+YP+H
Sbjct: 1411 EKIQAREYREFKGRNGWSNQF------------REEAGPNWKFPYKVNQAMSFEAVYPRH 1458
Query: 4838 SADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEES 5017
DDD+TF A++KRL F NY + A G L + F + + ++ DQ LL++
Sbjct: 1459 RMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKIFLKHVPIKCGRDQRLLDQC 1518
Query: 5018 VNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACF 5197
FE+ KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF
Sbjct: 1519 RQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACF 1578
Query: 5198 QHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFD 5377
H ILV+F+PWCRY E + LP+ YIH KNF +L + K+F CVESDY AFD
Sbjct: 1579 PHKILVEFSPWCRYTEKVLTASLPDNYYIHQRKNFCELEDFAKRFSNGSTCVESDYTAFD 1638
Query: 5378 ASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLA 5557
SQD IL+FEV L++ + ++ +YI +KC LGC+LG F+IMRFTGEF TFLFNTLA
Sbjct: 1639 VSQDHTILAFEVELLRHFGWDDSILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNTLA 1698
Query: 5558 NMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGW 5737
NM FT CRYE G PI FAGDDMCAL NL + + + LSLKAKV RT+ PMFCGW
Sbjct: 1699 NMVFTFCRYEVPDGTPICFAGDDMCALRNLREINTHELILNKLSLKAKVNRTKVPMFCGW 1758
Query: 5738 RLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQY 5917
RL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY L ERLY L+ E Q+ Y
Sbjct: 1759 RLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNY 1817
Query: 5918 HQAVVRFIV--THIDKLKTKVRDLYIEQSSDED 6010
HQ + RF + H+ + ++ +E SDED
Sbjct: 1818 HQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1850
Score = 169 bits (427), Expect = 3e-38
Identities = 115/408 (28%), Positives = 201/408 (49%), Gaps = 9/408 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I + I E + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPERTREWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P YV HSHP K ENH+LF+++ S ++ + C SIK +K+ + + R +++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMERLGSNSVRTYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
+NRL+ SKD +RY A S K +F
Sbjct: 124 -------------LNRLVTSKDKARYGPLATPERSP---------------CPKKTNIFI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ SFL + + T+V+PPE+L + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWSRTQLESFLAVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHDKDLVYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSASHL-----KSG-DHTWTVTRHKSIYAHHLFEVSAGE-LVT 946
DGV++E+Y Q L +L S+S + K+G + + V+ S+ +HHLF + E L+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLVYSLGSHHLFHIYPTEDLLK 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP+++ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMP 1267
+ D+ I+ ++F R+ + G + SF+ + D +P
Sbjct: 334 LSDADISIESVFMVQEFASRI--ERNGVGSWSCSFWECMKDWFFDKLP 379
>gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus]
Length = 1883
Score = 624 bits (1610), Expect = e-175
Identities = 421/1186 (35%), Positives = 610/1186 (51%), Gaps = 55/1186 (4%)
Frame = +2
Query: 2618 QFRGRKGA-FLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQ--GDEFNCALINFYDSD 2788
Q +G+K A F Y H+ + YP + +++ + G FN AL+ Y
Sbjct: 699 QLKGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKQVMMRAKEKWGINFNSALVQVYSDG 758
Query: 2789 SSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARH 2968
L H DNE+ Y+DD ILT+ +G+ + + + G+ LMP GYQK+ +H
Sbjct: 759 CRLPLHSDNEECYDDDGILTINIKGDAKFHTTCHDEITD--LKQGNEILMPAGYQKKNKH 816
Query: 2969 SVR-NTSPRVSVTFRKHVRRLD-GSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLRS 3142
+V N+ R SVT R H R S + K + CL +++ +++ + ++ +
Sbjct: 817 AVEVNSEGRTSVTLRVHKRDFSFESKLRFIKGKFD--CLFVSIAEIIHKKPEEVMMFIPH 874
Query: 3143 VNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRIS-LALQNNHF 3319
+ R +S+ G S++D +A CE I ++ D + G GL I + L+ NHF
Sbjct: 875 I----MDRCISN-RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGNHF 929
Query: 3320 SAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKD---ICAGVNYIQFAADYENARTLA 3490
S RS + + + + VL+ + K + + + D A L
Sbjct: 930 SVASVRRSSMDSLANSSKEIKSNGVLDHVTFNFHKRLKLVEPDLTIVDVKVDSSRAGKLL 989
Query: 3491 NSFLNMTTGICL-------GRVLDG-----GEKYFTHMLEERPKQIGFD----------- 3601
S ++ TGI R++ G + F M+ + ++I D
Sbjct: 990 KSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMVRGQSEEIKGDLFDKVQELNFM 1049
Query: 3602 ---VTAICGFAGSGKSRQLQSWLHSRKKGN--FCVVSPRANLAADWSFKLELEPNEKRKV 3766
+ I GFAGSGKS +Q+ + S KG+ V+ PR LA DW+ K +++ +
Sbjct: 1050 KVRIYGIFGFAGSGKSHAIQNLIQSEFKGSQGVMVICPRRFLAKDWNEK----GVDEKDI 1105
Query: 3767 ATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCK--VILLFDPLQARYH 3940
TFES +K D L ILDE++L P G+ DLL+ ++H K ++ + DPLQA Y
Sbjct: 1106 KTFESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILRKSTIVCIGDPLQAGYF 1165
Query: 3941 NRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFD 4120
D+ L E + RL + + Y + S+R+++F + + N EQ I+
Sbjct: 1166 CPKDDNYLSREGEIKRLF-KEGVNYKWYSYRINKFVAKKLAIETMNDFIGIDEQSS-IYK 1223
Query: 4121 DIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXX 4300
D+ S + +V+LV S +EK+ +S NVMTFGESQGLTFN I
Sbjct: 1224 DMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKL 1283
Query: 4301 XXXXRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCN 4480
MVA+TR + F G +++ L+ + + + + N
Sbjct: 1284 CSDAHIMVAVTRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILGSSSVN 1343
Query: 4481 LVRNEK---KNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXXPRCQTHL 4651
L+ +EK K DE+DRE RLEGD +LK I+LG+R + H+
Sbjct: 1344 LILSEKDITKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIIEPLGQVIKLTDGAIKCHI 1403
Query: 4652 YITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP-------- 4807
+ L D I+ +E RE++ +NQF RE GP
Sbjct: 1404 PVCSSQ-TLGPELDRIQAREFREFKGKNGWSNQF------------REEAGPNWKFPYRV 1450
Query: 4808 ---MRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMG 4978
M ++A+YP+H DDD+TF A++KRL F NY + A G L + F + +
Sbjct: 1451 NQAMSYEAVYPRHKMDDDLTFLAAIKKRLRFDNAANNYAKFKAAESRGKYLAKVFLKHVP 1510
Query: 4979 LEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 5158
++ DQ LL++ FE+ KL KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+
Sbjct: 1511 IKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKR 1570
Query: 5159 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQ 5338
F +AKAGQTLACF H ILV+F+PWCRY E + LP+ YIH KNF +L + ++F
Sbjct: 1571 FTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARRFSN 1630
Query: 5339 RDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRF 5518
CVESDY AFD SQD IL+FEV L+K + K++ +YI +KC LGC+LG F+IMRF
Sbjct: 1631 GSTCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKILQSYIKMKCTLGCRLGGFAIMRF 1690
Query: 5519 TGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKA 5698
TGEF TFLFNTLANM FT CRYE G PI FAGDDMCAL NL + + LSLKA
Sbjct: 1691 TGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILNKLSLKA 1750
Query: 5699 KVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 5878
KV RT+ PMFCGWRL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY L ER
Sbjct: 1751 KVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGER 1810
Query: 5879 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLY--IEQSSDED 6010
LY L+ E Q+ YHQ + RF + + L+ R +E SDED
Sbjct: 1811 LYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHSISELEWLSDED 1855
Score = 164 bits (416), Expect = 5e-37
Identities = 108/381 (28%), Positives = 189/381 (49%), Gaps = 9/381 (2%)
Frame = +2
Query: 71 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 250
S +T E +L + + I + I E + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSFYLPEKTREWFTKSGVYLS 63
Query: 251 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 427
P YV HSHP K ENH+LF+++ S ++ + C SIK +K+ + + + +++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMERLGSNSVKTYDI 123
Query: 428 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 607
+NRL+ +KD +RY A S K VF
Sbjct: 124 -------------LNRLVTAKDKARYGPLAKPERSP---------------CPKKTNVFI 155
Query: 608 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 787
HDE+H+W++ Q+ +FL+ K + T+V PPE+L + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWSRDQLETFLQIYKPKNLWATLVSPPEILAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 788 DGVKTEAYEQKLNMEWLFSASHLKSGDHT------WTVTRHKSIYAHHLFEVSAGE-LVT 946
DGV++E+Y Q L +L S+S + D T + V+ S+ +HHLF + E L+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVKDRTTGVEVRYQVSLTYSLGSHHLFHIYPTENLMK 275
Query: 947 DSKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1123
+ F Y D+ +F+ R + FP+++ K++ Y+ LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQ 333
Query: 1124 IIGDDVEIKEFLFFEQFCKRL 1186
+ D+ I+ ++F R+
Sbjct: 334 LSDADISIESIFMVQEFASRI 354