BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000014
         (1371 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   413   e-180
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   437   e-178
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   437   e-178
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 436   e-178
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   437   e-178
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   435   e-178
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   437   e-178
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   432   e-177
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   431   e-177
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   376   e-132
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   325   e-106
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   388   e-105
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             308   6e-95
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   308   6e-95
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   297   8e-92
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   285   3e-87
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 286   4e-87
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   285   4e-87
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 285   1e-86
ref|YP_002341559.1| replication-associated protein [Schlumberger...   261   6e-83

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  413 bits (1062), Expect(2) = e-180
 Identities = 203/228 (89%), Positives = 214/228 (93%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKL
Sbjct: 645  ETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKL 704

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTH
Sbjct: 705  PHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTH 764

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP 
Sbjct: 765  HESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPL 824

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMC
Sbjct: 825  PGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMC 872



 Score =  246 bits (628), Expect(2) = e-180
 Identities = 122/221 (55%), Positives = 151/221 (68%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            V T +RGPPGF NPFT+P PVNP+DAD    F++FS  + ++   T+   LE SAE+   
Sbjct: 406  VRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDH 465

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            HT LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++AS A
Sbjct: 466  HTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPA 525

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
             +     D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+A
Sbjct: 526  SSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRA 585

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
            TLP HW    L ++L+TLRSLNRFPT W PDR RARAFTSD
Sbjct: 586  TLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSD 626


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  437 bits (1125), Expect(2) = e-178
 Identities = 214/228 (93%), Positives = 221/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  218 bits (554), Expect(2) = e-178
 Identities = 116/221 (52%), Positives = 140/221 (63%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSD 621


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  437 bits (1125), Expect(2) = e-178
 Identities = 214/228 (93%), Positives = 221/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  217 bits (553), Expect(2) = e-178
 Identities = 115/221 (52%), Positives = 140/221 (63%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSD 621


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  436 bits (1121), Expect(2) = e-178
 Identities = 212/228 (92%), Positives = 220/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLTDN   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL
Sbjct: 628  ETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 687

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTH
Sbjct: 688  PHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTH 747

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HEANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQ
Sbjct: 748  HEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQ 807

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 808  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 855



 Score =  219 bits (557), Expect(2) = e-178
 Identities = 116/221 (52%), Positives = 139/221 (62%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNTRLRGPPGF +PFT+P PVNPDDA+T  +FREF      S   T+ + LE S E+  +
Sbjct: 408  VNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVT 467

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            HTSLKV    LS EQL ALHELGN+R GGP+LPK +                  T  S+ 
Sbjct: 468  HTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSD 512

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
            L +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A
Sbjct: 513  LLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRA 568

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
             +P HW+ P   K++ TLR+LNRFPT W PDRARARAFTSD
Sbjct: 569  IMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSD 609


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  437 bits (1125), Expect(2) = e-178
 Identities = 214/228 (93%), Positives = 221/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  217 bits (552), Expect(2) = e-178
 Identities = 115/221 (52%), Positives = 140/221 (63%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSD 621


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  435 bits (1119), Expect(2) = e-178
 Identities = 213/228 (93%), Positives = 220/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  218 bits (554), Expect(2) = e-178
 Identities = 116/221 (52%), Positives = 140/221 (63%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSD 621


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  437 bits (1125), Expect(2) = e-178
 Identities = 214/228 (93%), Positives = 221/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  214 bits (546), Expect(2) = e-178
 Identities = 114/221 (51%), Positives = 139/221 (62%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +  + L   QL ALHELGN R G PLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSD 621


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  432 bits (1112), Expect(2) = e-177
 Identities = 211/228 (92%), Positives = 219/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKL
Sbjct: 640  ETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQ
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQ 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  217 bits (552), Expect(2) = e-177
 Identities = 117/225 (52%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   + T+       +LE  AE    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXPTK 1023
            H SL +    L   QL ALHELGNTR GGPLLPK    +T  E   +          P +
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPR 522

Query: 1022 ASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 843
             +        T  +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+
Sbjct: 523  KTT------QTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE 576

Query: 842  LPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
            LP+A    HW  P + ++++TLRS NR+PT W PDR+RA+AFTSD
Sbjct: 577  LPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSD 621


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  431 bits (1109), Expect(2) = e-177
 Identities = 211/228 (92%), Positives = 219/228 (96%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQ MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKL
Sbjct: 640  ETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKL 699

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700  PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+
Sbjct: 760  HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPR 819

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMC
Sbjct: 820  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMC 867



 Score =  218 bits (555), Expect(2) = e-177
 Identities = 116/221 (52%), Positives = 141/221 (63%)
 Frame = -2

Query: 1370 VNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLAS 1191
            VNT LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    
Sbjct: 408  VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDE 462

Query: 1190 HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAA 1011
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 1010 LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 831
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 830  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                HW  P ++++L+TLRSLNR+PT W PDRARA+AFTSD
Sbjct: 581  DGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSD 621


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  376 bits (966), Expect(2) = e-132
 Identities = 181/228 (79%), Positives = 202/228 (88%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQT LT+     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KL
Sbjct: 621  ETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKL 680

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            PHNPPEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTH
Sbjct: 681  PHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTH 740

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+
Sbjct: 741  HESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPE 800

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC
Sbjct: 801  PGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMC 848



 Score =  124 bits (310), Expect(2) = e-132
 Identities = 88/226 (38%), Positives = 110/226 (48%), Gaps = 10/226 (4%)
 Frame = -2

Query: 1355 RGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLK 1176
            R PPGF +P  +P PVN  DA T  A                            ++ SL 
Sbjct: 412  RTPPGFRHPLCRPLPVNEVDALTTAA---------------------------CANQSLP 444

Query: 1175 VGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGD 996
            + +  LS +QL ALH LG+ R  G  LP  +P +   E           T ++A   +  
Sbjct: 445  LDN--LSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTV 496

Query: 995  HTDQVPVNS---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 843
             T  V V++         DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ 
Sbjct: 497  PTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQT 556

Query: 842  LPKATLPEHWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
            LP  T  E+ +      KV+ TL+ LNR PT W PDR RARA+ SD
Sbjct: 557  LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASD 602


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  325 bits (832), Expect(2) = e-106
 Identities = 152/228 (66%), Positives = 191/228 (83%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            E QT+  D+    + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KL
Sbjct: 715  EAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKL 774

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            P N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS H
Sbjct: 775  PRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVH 834

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE NE+A+I++L P+T IFS+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP 
Sbjct: 835  HETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPI 894

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
              +HLLVPSL+KKAAF++AGHK STYAGCQGITA K+QILLD++T MC
Sbjct: 895  KDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMC 942



 Score = 89.7 bits (221), Expect(2) = e-106
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
 Frame = -2

Query: 1103 PLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 936
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 935  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 756
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 755  TSWCPDRARARAFTSD 708
            T W PD  RA++FTSD
Sbjct: 681  TLWTPDTLRAKSFTSD 696


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  388 bits (996), Expect = e-105
 Identities = 187/198 (94%), Positives = 194/198 (97%)
 Frame = -1

Query: 594 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 415
           LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1   LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 414 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 235
           LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61  LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 234 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 55
           HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 54  GITAPKVQILLDNDTTMC 1
           GITAP+VQILLDNDTTMC
Sbjct: 181 GITAPRVQILLDNDTTMC 198


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  308 bits (788), Expect(2) = 6e-95
 Identities = 149/228 (65%), Positives = 177/228 (77%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQT+  + +   + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K 
Sbjct: 647  ETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKA 706

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            P   PE+ +T+ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTH
Sbjct: 707  PKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTH 766

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP 
Sbjct: 767  HENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPI 826

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
              LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC
Sbjct: 827  KDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMC 874



 Score = 68.6 bits (166), Expect(2) = 6e-95
 Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = -2

Query: 980 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 804
           PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543 PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 803 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
               V+  L  L+R PT W P   RAR++TSD
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSD 628


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  308 bits (788), Expect(2) = 6e-95
 Identities = 149/228 (65%), Positives = 177/228 (77%)
 Frame = -1

Query: 684  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 505
            ETQT+  + +   + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K 
Sbjct: 647  ETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKA 706

Query: 504  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 325
            P   PE+ +T+ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTH
Sbjct: 707  PKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTH 766

Query: 324  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 145
            HE NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP 
Sbjct: 767  HENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPI 826

Query: 144  PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
              LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC
Sbjct: 827  KDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMC 874



 Score = 68.6 bits (166), Expect(2) = 6e-95
 Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = -2

Query: 980 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 804
           PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543 PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 803 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
               V+  L  L+R PT W P   RAR++TSD
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSD 628


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  297 bits (761), Expect(2) = 8e-92
 Identities = 144/215 (66%), Positives = 173/215 (80%)
 Frame = -1

Query: 645  LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 466
            LAISVIHGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+
Sbjct: 815  LAISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEK 874

Query: 465  AFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 286
            A +   +PIVIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + 
Sbjct: 875  ALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIE 934

Query: 285  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKK 106
            P     SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PGLH+LVPSL KK
Sbjct: 935  PLVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKK 994

Query: 105  AAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
             AF++ GHKVSTYAGCQGITAPK+QILL  +T++C
Sbjct: 995  QAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLC 1029



 Score = 68.6 bits (166), Expect(2) = 8e-92
 Identities = 39/83 (46%), Positives = 51/83 (61%)
 Frame = -2

Query: 956 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 777
           LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707 LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPE----VVYKTL 760

Query: 776 RSLNRFPTSWCPDRARARAFTSD 708
             L R PT + P+  RARA+TSD
Sbjct: 761 DGLARAPTPYSPNPIRARAYTSD 783


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  285 bits (728), Expect(2) = 3e-87
 Identities = 140/223 (62%), Positives = 167/223 (74%)
 Frame = -1

Query: 669  LTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPP 490
            L +N    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P 
Sbjct: 801  LVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPA 860

Query: 489  EQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANE 310
            +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE
Sbjct: 861  DQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNE 920

Query: 309  EALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHL 130
             A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHL
Sbjct: 921  NAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHL 980

Query: 129  LVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            LVPSL KK AF++ GHK STYAGCQG+TAP+VQILL  +T+MC
Sbjct: 981  LVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMC 1023



 Score = 65.9 bits (159), Expect(2) = 3e-87
 Identities = 39/87 (44%), Positives = 52/87 (59%)
 Frame = -2

Query: 968 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 789
           +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697 EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 788 LTTLRSLNRFPTSWCPDRARARAFTSD 708
              L S  R PT + P   RA+A++SD
Sbjct: 754 ---LNSQARAPTPFSPSPIRAKAYSSD 777


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  286 bits (731), Expect(2) = 4e-87
 Identities = 141/223 (63%), Positives = 169/223 (75%)
 Frame = -1

Query: 669  LTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPP 490
            L +N    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P 
Sbjct: 801  LVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPA 860

Query: 489  EQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANE 310
            +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE
Sbjct: 861  DQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNE 920

Query: 309  EALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHL 130
             A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHL
Sbjct: 921  NAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHL 980

Query: 129  LVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            LVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC
Sbjct: 981  LVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMC 1023



 Score = 64.3 bits (155), Expect(2) = 4e-87
 Identities = 38/87 (43%), Positives = 51/87 (58%)
 Frame = -2

Query: 968 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 789
           +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697 EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 788 LTTLRSLNRFPTSWCPDRARARAFTSD 708
              L    R PT + P   RA+A++SD
Sbjct: 754 ---LNDQARAPTPFSPSPIRAKAYSSD 777


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  285 bits (729), Expect(2) = 4e-87
 Identities = 140/223 (62%), Positives = 168/223 (75%)
 Frame = -1

Query: 669  LTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPP 490
            L +N    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P 
Sbjct: 801  LVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPA 860

Query: 489  EQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANE 310
            +Q +TFE+A +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE
Sbjct: 861  DQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNE 920

Query: 309  EALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHL 130
             A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHL
Sbjct: 921  NAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHL 980

Query: 129  LVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            LVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC
Sbjct: 981  LVPSLYKKQAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMC 1023



 Score = 65.1 bits (157), Expect(2) = 4e-87
 Identities = 39/87 (44%), Positives = 52/87 (59%)
 Frame = -2

Query: 968 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 789
           +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 788 LTTLRSLNRFPTSWCPDRARARAFTSD 708
           L       R PT + P   RA+A++SD
Sbjct: 754 LD---DQARAPTPFSPSPIRAKAYSSD 777


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  285 bits (729), Expect(2) = 1e-86
 Identities = 140/223 (62%), Positives = 168/223 (75%)
 Frame = -1

Query: 669  LTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPP 490
            L +N    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P 
Sbjct: 801  LVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPA 860

Query: 489  EQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANE 310
            +Q +TFE+A +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE
Sbjct: 861  DQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNE 920

Query: 309  EALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHL 130
             A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHL
Sbjct: 921  NAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHL 980

Query: 129  LVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            LVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL  +T+MC
Sbjct: 981  LVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMC 1023



 Score = 63.9 bits (154), Expect(2) = 1e-86
 Identities = 38/87 (43%), Positives = 53/87 (60%)
 Frame = -2

Query: 968 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 789
           +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEK-VDPSLLKM 753

Query: 788 LTTLRSLNRFPTSWCPDRARARAFTSD 708
           L    +  R PT + P   RA+A++SD
Sbjct: 754 LD---NQARAPTPFSPSPIRAKAYSSD 777


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  261 bits (666), Expect(2) = 6e-83
 Identities = 128/222 (57%), Positives = 155/222 (69%)
 Frame = -1

Query: 666  TDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPE 487
            T+     + +SVIHG GGSGKS ALQ  LR NP+  I V+LPTNELRLDW +KLP   P 
Sbjct: 816  TEMPPRTIGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPN 875

Query: 486  QFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEE 307
              +TFE++ +   S +VI DDY KLP G+IEA+  T++ LE +ILTGDP QS HHE NE 
Sbjct: 876  SLKTFEKSLLVGASSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGDPNQSFHHEPNEN 935

Query: 306  ALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLL 127
            AL SK+AP + I    SRYY+NATHRN + LAN L VYS       +T      PG HLL
Sbjct: 936  ALTSKIAPFSEIAQSFSRYYLNATHRNKRDLANMLAVYSEVEGTTNITMSSTVLPGRHLL 995

Query: 126  VPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMC 1
            VPS+ KK A+ + GHKVSTYAGCQGITAP++QIL+DNDT MC
Sbjct: 996  VPSMYKKQAYGEMGHKVSTYAGCQGITAPEIQILIDNDTPMC 1037



 Score = 75.5 bits (184), Expect(2) = 6e-83
 Identities = 51/160 (31%), Positives = 81/160 (50%)
 Frame = -2

Query: 1187 TSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAAL 1008
            T+L +GHA+L T+++ A  +L  T L G  +   T  +  +             + S   
Sbjct: 648  TTLNIGHAELRTKRI-ADGDLSFTSLTGVCV--YTMPQGFQSTHKHAVTSLEEGRISITF 704

Query: 1007 NQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKAT 828
                H      +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K  
Sbjct: 705  RTSVH------HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTP 758

Query: 827  LPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSD 708
                 + PG+++VLT    ++R PT + PD  RA+AF SD
Sbjct: 759  A----SHPGINEVLT---CIHRLPTPFTPDPLRAKAFGSD 791