BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000012
         (2868 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1577   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1558   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1558   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1558   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1556   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1555   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1553   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1553   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1468   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1249   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             894   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   890   0.0  
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   886   0.0  
sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltN...   753   0.0  
gb|AAF89747.1|AF172259_1 replicase [Potato virus X]                   750   0.0  
sp|P22591.1|RDRP_PVXCP RecName: Full=RNA replication protein; Al...   749   0.0  
gb|AAZ82034.1| RNA-dependent RNA polymerase [Potato virus X]          747   0.0  
dbj|BAE07083.1| RNA dependent RNA polymerase [Potato virus X]         747   0.0  
dbj|BAJ12041.1| RNA-dependent RNA polymerase [Potato virus X]         747   0.0  
gb|AAK66552.1|AF373782_1 KR [Potato virus X]                          747   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1577 bits (4084), Expect = 0.0
 Identities = 781/955 (81%), Positives = 834/955 (87%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI TSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            YDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPD
Sbjct: 219  YDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNTRLRGPPGF +PFT+P PVNP+DA+T  +FREF      S   T+ + L
Sbjct: 399  ITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEML 458

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
            E S E+  +HTSLKV    LS EQL ALHELG++R GGP+LP+ + +             
Sbjct: 459  ENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH------------ 506

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
               T  ++ L +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPI
Sbjct: 507  ---THTSSDLLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPI 559

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A +P HW+ P   K++ TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKAL
Sbjct: 560  TDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKAL 619

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+QTWKETQTMLTDN   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL
Sbjct: 620  HRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 679

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILT
Sbjct: 680  RLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILT 739

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLK
Sbjct: 740  GDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLK 799

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 800  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 859

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSA         
Sbjct: 860  LYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVM 919

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 920  PPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEA 979

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLWT 2
            LLWETIKARLTISTPEAN+EE RAKKDLGDILW NY KAM LPKEQP+FSE+LWT
Sbjct: 980  LLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWT 1034


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1558 bits (4035), Expect = 0.0
 Identities = 775/954 (81%), Positives = 822/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +    L   QL ALHELG+ R GGPLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1558 bits (4034), Expect = 0.0
 Identities = 774/954 (81%), Positives = 822/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +  + L   QL ALHELG+ R GGPLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1558 bits (4033), Expect = 0.0
 Identities = 774/954 (81%), Positives = 822/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +  + L   QL ALHELG+ R GGPLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1556 bits (4029), Expect = 0.0
 Identities = 774/954 (81%), Positives = 821/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +    L   QL ALHELG+ R GGPLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1555 bits (4027), Expect = 0.0
 Identities = 773/954 (81%), Positives = 821/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +  + L   QL ALHELG+ R G PLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1553 bits (4021), Expect = 0.0
 Identities = 773/954 (81%), Positives = 819/954 (85%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            +FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  VFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F     T+       +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----AL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
            E  AE    H SL +    L   QL ALHELG+TR GGPLLP+  P +  +         
Sbjct: 454  EQQAETPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK-GPAKLTTVEPCPDLPA 512

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                            D  P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 513  ENSANPEPPRKTTQTLD-LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P + ++++TLRS NR+PTPW PDR+RA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILT
Sbjct: 692  RLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLTIS PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLW 1045


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1553 bits (4020), Expect = 0.0
 Identities = 772/954 (80%), Positives = 821/954 (86%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH 
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHN 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F          T+  +L
Sbjct: 399  ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
               +E    H SL +    L   QL ALHELG+ R GGPLLP+       +E        
Sbjct: 454  AQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAE 513

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
                      ++   +   P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI
Sbjct: 514  PQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPI 571

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D R+LP+A    HW  P ++++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKAL
Sbjct: 572  TDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKAL 631

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+Q WKETQ MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNEL
Sbjct: 632  HRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNEL 691

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILT
Sbjct: 692  RLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILT 751

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK
Sbjct: 752  GDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 811

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
Sbjct: 812  VTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 871

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A         
Sbjct: 872  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVA 931

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 932  PPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEA 991

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWETI ARLT+S PEANL E RAKKDLGDILW NYRKAMKLP EQP+FSEDLW
Sbjct: 992  LLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1468 bits (3801), Expect = 0.0
 Identities = 733/954 (76%), Positives = 792/954 (83%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF
Sbjct: 99   PAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +TALFAHSP+LQTLYATLVLPPE     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK
Sbjct: 159  LTALFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 217

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            YDQLEWLTVGHLTA   PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP 
Sbjct: 218  YDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPH 277

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLPE YNCRTPISKT MMQMFFYIKS KEA+      + +QLISTKELQHYQPSEITLL
Sbjct: 278  IFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLL 337

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTA+LDSHTCFEDV    L  +        I R+LQFFRGRPSFVKLIKALDWQP
Sbjct: 338  VNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQP 396

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD    F++FS    ++   T+   L
Sbjct: 397  ITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVL 456

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
            E SAE+   HT LKV  + LS  QL A+H LG +R GGPLLP +       E        
Sbjct: 457  EASAESPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPC 516

Query: 1606 XXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1427
               ++A+   +     D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI
Sbjct: 517  PTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPI 576

Query: 1426 ADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1247
             D ++LP+ATLP HW    L ++L+TLRSLNRFPTPW PDR RARAFTSDVKNSRTGKAL
Sbjct: 577  TDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKAL 636

Query: 1246 HRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1067
            HRE+QTWKETQTMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNEL
Sbjct: 637  HRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNEL 696

Query: 1066 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 887
            RLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILT
Sbjct: 697  RLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILT 756

Query: 886  GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 707
            GDPRQSTHHE+NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL 
Sbjct: 757  GDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLN 816

Query: 706  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 527
            VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEV
Sbjct: 817  VTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEV 876

Query: 526  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 347
            LYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF A         
Sbjct: 877  LYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVT 936

Query: 346  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 167
                  PVE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEA
Sbjct: 937  PPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEA 996

Query: 166  LLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            LLWE I+ARL ISTPEAN+EE RAKKDLGDILW NY +AM LPKEQP+FSEDLW
Sbjct: 997  LLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLW 1050


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1249 bits (3231), Expect = 0.0
 Identities = 635/960 (66%), Positives = 728/960 (75%), Gaps = 6/960 (0%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P+KLR+FHRGP H D FLNA++EPKDVPRYP DTVI  +  I T +AFMGDTLHFL PSF
Sbjct: 99   PSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HK
Sbjct: 159  ITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHK 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            YDQL+WLT G+L + +  T+TAQRLETKGANHLFIFQRG YLTPERRTFTT   YVTVP+
Sbjct: 219  YDQLQWLTAGYLISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPE 277

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP   N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLL
Sbjct: 278  IFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLL 337

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P   KLIKAL WQP
Sbjct: 338  VNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQP 397

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            + LEF V TV    R PPGF +P  +P PVN  DA T  A       A  S P       
Sbjct: 398  VLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA------CANQSLPLD----- 446

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
                              +LS +QL ALH LGS R  G  LP  +P +   E        
Sbjct: 447  ------------------NLSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTPT 486

Query: 1606 XXP---TKANTTLNQGDHADQAPVNS--DPATLPWVAWLPKLNALGFEALEIQTDPSTGE 1442
                  TK   T N    A+        DP TLPW AWLP L ALGFEA EIQTDP    
Sbjct: 487  ISAAGPTKTVPTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHS 546

Query: 1441 VIMPIADVRDLPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNS 1265
             IMPI D++ LP  T  E+ +      KV+ TL+ LNR PTPW PDR RARA+ SD+KNS
Sbjct: 547  TIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNS 606

Query: 1264 RTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVV 1085
            RTGKALH+E+Q WKETQT LT+     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVV
Sbjct: 607  RTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVV 666

Query: 1084 LPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 905
            LPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+    L
Sbjct: 667  LPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGL 726

Query: 904  ELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSS 725
            +L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSS
Sbjct: 727  KLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSS 786

Query: 724  NSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTT 545
            N  PL V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITAP+VQILLD+DTT
Sbjct: 787  NPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTT 846

Query: 544  MCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXX 365
            MC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+EEF+A   
Sbjct: 847  MCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVED 906

Query: 364  XXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQ 185
                        PVE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQ
Sbjct: 907  PPQEVAPPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQ 966

Query: 184  QAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQPEFSEDLW 5
            QAKDEALLWETI ARL +STPEANL E  AKKDLGD+LW NY +AMKLPKEQP+FS +LW
Sbjct: 967  QAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELW 1026


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  894 bits (2309), Expect = 0.0
 Identities = 491/970 (50%), Positives = 609/970 (62%), Gaps = 17/970 (1%)
 Frame = -3

Query: 2863 AKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSFV 2684
            AKL++F RG   GD F+N   EPKD  RYP DT+ S +  I T +AFMGDTLHFL P+F+
Sbjct: 100  AKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFL 159

Query: 2683 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 2504
            T LF  SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y
Sbjct: 160  TDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTY 219

Query: 2503 DQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDI 2324
             QL+WL VGH+ + +   ITAQR+ETK ANHLF+F RG   TP  R+F     Y T+P I
Sbjct: 220  SQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAI 279

Query: 2323 FLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---T 2153
            FLP ++N RTP +KT + QMF Y+KS+K+  E D++AKFRQL  T +LQ   P       
Sbjct: 280  FLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGE 339

Query: 2152 LLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDW 1973
            LL  + E   S         +LSG+ ++RLL+PL   ++++ Q   GR  FV+L+KAL+W
Sbjct: 340  LLPPHLEARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEW 395

Query: 1972 QPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTT 1802
              IT    V    T +T  R   G        + + P   + +RA     Y     T   
Sbjct: 396  TDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLD 455

Query: 1801 IADSLEGSAENLASH---TSLKVGHADLSTEQ-------LRALHELGSTRLGGPLLPRIA 1652
              D    +   L ++   T+L   H     E        L+  H       GGP     A
Sbjct: 456  ETDPKAEAFALLCNNPHGTTLFAPHTTAPEEDITHRVLALKVPHGSPPPGFGGP--SSAA 513

Query: 1651 PDEQDSEXXXXXXXXXXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEAL 1472
              EQ+ E            +      +G      PV++    LPW  W P L  LGF+A 
Sbjct: 514  QPEQEKEVARPATPPEQEKQP-----EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAR 568

Query: 1471 EIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARA 1295
            EIQ  P    VIMPI + V  LP + +  H        V+  L  L+R PTPW P   RA
Sbjct: 569  EIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRA 622

Query: 1294 RAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLR 1115
            R++TSD+KN RTG  L +E+ TWKETQT+  + +   + +SVIHG GGSGKS A Q LLR
Sbjct: 623  RSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLR 682

Query: 1114 QNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
            Q+PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SPVV+FDDYGKLP GYI
Sbjct: 683  QHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYI 742

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA+      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN + 
Sbjct: 743  EAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRD 802

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPR 575
            LANKL VYS      K+T GFQP   +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP+
Sbjct: 803  LANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPK 862

Query: 574  VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRED 395
            +QILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+
Sbjct: 863  IQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREE 922

Query: 394  KIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGD 215
             I                    PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  
Sbjct: 923  AIAAHQLPNADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQ 982

Query: 214  DPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPK 35
            +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EE   KKD+GDILW +Y+KAM LP+
Sbjct: 983  NPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPE 1042

Query: 34   EQPEFSEDLW 5
            E   FSEDLW
Sbjct: 1043 EPLPFSEDLW 1052


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  890 bits (2300), Expect = 0.0
 Identities = 490/968 (50%), Positives = 609/968 (62%), Gaps = 15/968 (1%)
 Frame = -3

Query: 2863 AKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSFV 2684
            AKL++F RG   GD F+N   EPKD  RYP DT+ S +  I T +AFMGDTLHFL P+F+
Sbjct: 100  AKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFL 159

Query: 2683 TALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY 2504
            T LF  SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y
Sbjct: 160  TDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTY 219

Query: 2503 DQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDI 2324
             QL+WL VGH+ + +   ITAQR+ETK ANHLF+F RG   TP  R+F     Y T+P I
Sbjct: 220  SQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAI 279

Query: 2323 FLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---T 2153
            FLP ++N RTP +KT + QMF Y+KS+K+  E D++AKFRQL  T +LQ   P       
Sbjct: 280  FLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGE 339

Query: 2152 LLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDW 1973
            LL  + E   S         +LSG+ ++RLL+PL   ++++ Q   GR  FV+L+KAL+W
Sbjct: 340  LLPPHLEARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEW 395

Query: 1972 QPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTT 1802
              IT    V    T +T  R   G        + + P   + +RA     Y     T   
Sbjct: 396  TDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLD 455

Query: 1801 IADSLEGSAENLASH---TSLKVGHA-----DLSTEQLRALHELGSTRLGGPLLPRIAPD 1646
              D    +   L ++   T+L   H      D++   L      GS   G       A  
Sbjct: 456  ETDPKAEAFALLCNNPHGTTLFAPHTTAPEEDITHRVLALKVPRGSPPPGFEGPSSSAQP 515

Query: 1645 EQDSEXXXXXXXXXXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEI 1466
            EQ+ E            +      +G      PV++    LPW  W P L  LGF+A EI
Sbjct: 516  EQEKEVAKPATPPEQEKQP-----EGQKMITRPVSALENALPWNKWTPILRGLGFQAREI 570

Query: 1465 QTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARA 1289
            Q  P    VIMPI + V  LP + +  H        V+  L  L+R PTPW P   RAR+
Sbjct: 571  QRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARS 624

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQN 1109
            +TSD+KN RTG  L +E+ TWKETQT+  + +   + +SVIHG GGSGKS A Q LLRQ+
Sbjct: 625  YTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQH 684

Query: 1108 PDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEA 929
            PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SPVV+FDDYGKLP GYIEA
Sbjct: 685  PDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEA 744

Query: 928  FAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLA 749
            +      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN + LA
Sbjct: 745  YVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLA 804

Query: 748  NKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQ 569
            NKL VYS      K+T GFQP   +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++Q
Sbjct: 805  NKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQ 864

Query: 568  ILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI 389
            ILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ I
Sbjct: 865  ILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAI 924

Query: 388  EEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDP 209
                                PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P
Sbjct: 925  AAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNP 984

Query: 208  TTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLPKEQ 29
              QLF HQQAKDEALLWETIKARLTIS+PEAN EE   KKD+GDILW +Y+KAM LP+E 
Sbjct: 985  LVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEP 1044

Query: 28   PEFSEDLW 5
              FSEDLW
Sbjct: 1045 LPFSEDLW 1052


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  886 bits (2289), Expect = 0.0
 Identities = 441/579 (76%), Positives = 481/579 (83%), Gaps = 1/579 (0%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            PAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPT+IAF+GDTLHFLSPSF
Sbjct: 99   PAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSF 158

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            VTALFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHK
Sbjct: 159  VTALFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHK 218

Query: 2506 YDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 2327
            Y QLEWLTVGHLTA    T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD
Sbjct: 219  YSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD 278

Query: 2326 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 2147
            IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279  IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338

Query: 2146 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 1967
            VNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQP
Sbjct: 339  VNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQP 398

Query: 1966 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSL 1787
            ITLEFPVR VNT LRGPPGF +PFT+P PVNP+DA+T  +F+ F   A       +  +L
Sbjct: 399  ITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETTL 453

Query: 1786 EGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXX 1607
            E  AE    H SL++    LS  QL ALH+LG+ R GGPLLP+  PD   S         
Sbjct: 454  EQQAETPDEHQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ-RPD--TSTVVEPCPDL 510

Query: 1606 XXPTKANTTLNQ-GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMP 1430
               T A    +Q    A   P   DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMP
Sbjct: 511  PPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMP 570

Query: 1429 IADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKA 1250
            I D ++LP+A  P HW  P + ++++TLRSLNR+PTPW PDR+RARAFTSDVKNSRTGKA
Sbjct: 571  ITDTKELPRAIGPAHWQGPDMEQIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKA 630

Query: 1249 LHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQA 1133
            LHRE+Q WKETQTMLT++   NLAISVIHGAGGSGKSQA
Sbjct: 631  LHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKSQA 669


>sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltName: Full=165 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|309911|gb|AAA47167.1| RNA-replicating
            protein [Potato virus X]
          Length = 1456

 Score =  753 bits (1943), Expect = 0.0
 Identities = 441/1031 (42%), Positives = 585/1031 (56%), Gaps = 77/1031 (7%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL +  R P   D F N  +EP+DV RYP++T+I +L  I T  A++GDTLHFL PS+
Sbjct: 98   PRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYIGDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL    +     T+T Q  E+  ANHL+  +RG+ LT
Sbjct: 218  FSHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  Y   E+  LV+Y EF A L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGPPGFH------------------- 1904
             G   + KL+KA+D+ P+   F V T + R   L+    F                    
Sbjct: 398  FGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMENLFSDGDL 457

Query: 1903 -NPFTK--PHPVNPE-DADTMRAFREFSYTAETSTPTTIADSLEGSAENLASHT----SL 1748
             + FT+   + VN E D   +R   E     E   P    +     AE   S      S 
Sbjct: 458  LDCFTRMPAYAVNAEEDLAAIRKTPEMDAGQEVKEPAGDRNQYSNPAETFLSKLHRKHSR 517

Query: 1747 KVGHADLST--------EQLRALHELGSTRLGGPL--------LPRIAPDEQDSEXXXXX 1616
            +V H             E +RA  E  S  + G +        LP  +   Q+       
Sbjct: 518  EVKHQAAKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSGARQELTLPTTK 577

Query: 1615 XXXXXPTKANTTLNQ---------GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1463
                    A+ T +          G  A +         LPW  W+P+LNA+GF+ALEIQ
Sbjct: 578  PVPARWEDASFTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQ 637

Query: 1462 TDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT-LRSLNRFPTPWCPDRARARA 1289
             D S G +IMPI + V  L K   PE     G  K L   L ++NR P     D  RAR 
Sbjct: 638  RDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKELARELLAMNRSPATIPLDLLRARD 691

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKSQALQTLLRQ 1112
            + SDVKN R G     +  +W E  T   +++T   +A  VIHGAGGSGKS A+Q  LR+
Sbjct: 692  YGSDVKNKRIGAITKTQAASWGEYLTGKIESLTERKVAACVIHGAGGSGKSHAIQKALRE 751

Query: 1111 -NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
                  I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDDY KLP GYI
Sbjct: 752  IGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYI 811

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA    ++ ++LVILTGD RQS +HE  E+A I  L PAT  FS+  RYY+NATHRN K 
Sbjct: 812  EALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD 871

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAGCQGITAP 578
            LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAGCQG+T P
Sbjct: 872  LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKP 931

Query: 577  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 398
            +VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE
Sbjct: 932  KVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVRE 991

Query: 397  DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 218
              ++E+                  VE++ + L+++KE L +KF+REI +E+HGH+NCVQ 
Sbjct: 992  QALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQT 1051

Query: 217  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLP 38
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  E  +KKD+GD+L+ NY+KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 37   KEQPEFSEDLW 5
            KE+  FS+++W
Sbjct: 1112 KERIPFSQEVW 1122


>gb|AAF89747.1|AF172259_1 replicase [Potato virus X]
          Length = 1456

 Score =  750 bits (1936), Expect = 0.0
 Identities = 432/1038 (41%), Positives = 585/1038 (56%), Gaps = 84/1038 (8%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL F  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNFMRRNPRIKDIFHNVAIEPRDVARYPKETIIHKLAEIETDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL   ++     T+T Q  E+  ANHL+  +RGN +T
Sbjct: 218  FSHLQWLKVGKIKWRDPKDGLLGHLNYTHEQVDTHTVTVQLQESFAANHLYCIRRGNMMT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVLPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  +   E+  LV+Y EF A+L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKFSAVELVYLVSYMEFLAALQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEF-------------------------------------- 1952
             G   + KL+KA+DW+P+   F                                      
Sbjct: 398  CGLEDYAKLVKAVDWRPVDFSFKVETWDFRFHPLGMWKAFRPSELSDVEEMNNFFDDGDL 457

Query: 1951 -------PVRTVNTR--LRGPPGFHNPFTKPHPVNPED--------ADTMRAFREFSYTA 1823
                   P   VN    L G  G +   T   P  PE         A+T        +  
Sbjct: 458  LDCFTRMPAYAVNAEEDLAGMRGNNQEETSTAPREPEGEKKEYINPAETFLDKLTRKHNR 517

Query: 1822 ETSTPTT--------IADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPL 1667
            ET +           I DS+        SH +  +G A  S  +L  ++E+G+    G  
Sbjct: 518  ETRSRAAKKAKRLAEIQDSMNRDRTEEGSHKTPNMGEAP-SNAELPGVNEVGA----GTT 572

Query: 1666 LPRIAPDEQDSEXXXXXXXXXXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNAL 1487
             P +    Q  E           T   T +  G    +A        LPW  WLP+LNA+
Sbjct: 573  FPTLKALSQKWEDASFTDSS---TIDPTEIIPGKEDVKAATQKVVDELPWKHWLPQLNAV 629

Query: 1486 GFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCP 1310
            GF+ALEIQ D + G +IMPI + V  L K   PE   E     +   L+++NR PT    
Sbjct: 630  GFKALEIQRDRN-GTMIMPITEMVFGLDKEEFPEGTPET----LARELKAMNRSPTTIPL 684

Query: 1309 DRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKSQA 1133
            D  RAR + SDVKN R G     +  +W E  T   +++    +A  VIHGAGGSGKS A
Sbjct: 685  DLLRARDYGSDVKNKRIGAITKTQAASWGEYLTGKIESLPERKVAACVIHGAGGSGKSHA 744

Query: 1132 LQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYG 956
            +Q  LR+      I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDDY 
Sbjct: 745  IQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYS 804

Query: 955  KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 776
            KLP GYIEA       ++L+ILTGD RQS +HE +++A I  L PAT +F++  RYY+NA
Sbjct: 805  KLPPGYIEALVSFSTKIKLIILTGDSRQSVYHETSDDASIRHLGPATEVFAKYCRYYLNA 864

Query: 775  THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAG 599
            THRN K LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAG
Sbjct: 865  THRNKKDLANMLGVYSERTGTTEISMSSEFLEGVPTLVPSDEKRRLYMGTGRNDTFTYAG 924

Query: 598  CQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKT 419
            CQG+T P+VQI+LD++T +C+  V+YTALSRA D IHF+N++A SSAFWEKL++TPYLKT
Sbjct: 925  CQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIHFINTSANSSAFWEKLDSTPYLKT 984

Query: 418  FLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHG 239
            FLS+VRE  ++E+                  VE++ + L+++KE L +KF+REI ++AHG
Sbjct: 985  FLSVVREHALKEYEPAEAEPIKEPEPQTHMCVENEESVLEEYKEELLEKFDREIHSDAHG 1044

Query: 238  HTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANY 59
            H+NCVQ +D T QLFSHQQAKDE LLW TI ARL  S  E+N  E  +K+D+GD+L+ NY
Sbjct: 1045 HSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQESNFREFLSKRDIGDVLFLNY 1104

Query: 58   RKAMKLPKEQPEFSEDLW 5
            ++AM LPKE   FS+++W
Sbjct: 1105 QRAMGLPKEPIPFSQEVW 1122


>sp|P22591.1|RDRP_PVXCP RecName: Full=RNA replication protein; AltName: Full=165 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|61286|emb|CAA39324.1| 166K protein
            [Potato virus X] gi|333489|gb|AAA47172.1| ORF1- 166K
            protein [Potato virus X] gi|333504|gb|AAA47178.1| 166K
            protein [Potato virus X]
          Length = 1456

 Score =  749 bits (1935), Expect = 0.0
 Identities = 432/1040 (41%), Positives = 588/1040 (56%), Gaps = 86/1040 (8%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL F  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNFMRRNPRIKDIFHNVAIEPRDVARYPKETIIHKLAEIETDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPSEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL   ++     T+T Q  E+  ANHL+  +RGN +T
Sbjct: 218  FTDLQWLKVGKIKWRDPKDGLLGHLNYTHEQVDTHTVTVQLQESFAANHLYCIRRGNMMT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVLPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +   +   E+  LV+Y EF A+L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDRDKFSAVELVYLVSYMEFLAALQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEF-------------------------------------- 1952
             G   +VKL+KA+DW+P+   F                                      
Sbjct: 398  CGLEDYVKLVKAVDWRPVDFSFKVETWDFRFTQLGMWKAFQPSELSDVEEMNNFFDDGDL 457

Query: 1951 -------PVRTVNTR--LRGPPGFHNPFTKPHPVNPED--------ADTMRAFREFSYTA 1823
                   P   VN    L G  G +   T   P  PE         A+T        +  
Sbjct: 458  LDCFTRMPAYAVNAEEDLAGMRGNNQEETSTAPREPEGEKKEYINPAETFLDKLTRKHNR 517

Query: 1822 ETSTPTT--------IADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL--GSTRLGG 1673
            ET +           I DS+        SH +  +G A  S   L  ++E+  G+T    
Sbjct: 518  ETRSRAAKKAKRLAEIQDSMNRDRTEEGSHKTPNMGEAP-SNADLPGVNEVEAGTTFPTL 576

Query: 1672 PLLPRIAPDEQDSEXXXXXXXXXXPTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLN 1493
              LP+   D   ++           T   T +  G+  D+A        LPW  WLP+LN
Sbjct: 577  KALPQKWEDASSTDSS---------TIDPTEIIPGEEDDKAATQKVVVGLPWKHWLPQLN 627

Query: 1492 ALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPW 1316
            A+GF+ALEIQ D + G +IMPI + V  L K   PE   E     +   L+++NR PT  
Sbjct: 628  AVGFKALEIQRDRN-GTMIMPITEMVFGLDKEEFPEGTPEA----LARELKAMNRSPTTI 682

Query: 1315 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKS 1139
              D  RAR + SDVKN R G     +  +W E  T   +++    +A  VIHGAGGSGKS
Sbjct: 683  PLDLLRARDYGSDVKNKRIGAITKTQAASWGEYLTGKIESLPERKVAACVIHGAGGSGKS 742

Query: 1138 QALQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDD 962
             A+Q  LR+      I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDD
Sbjct: 743  HAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDD 802

Query: 961  YGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYI 782
            Y KLP GYIEA       ++L+ILTGD RQS +HE +++A I  L PAT +F++  RYY+
Sbjct: 803  YSKLPPGYIEALVSFSTKIKLIILTGDSRQSVYHETSDDASIRHLGPATEVFAKYCRYYL 862

Query: 781  NATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTY 605
            NATHRN K LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TY
Sbjct: 863  NATHRNKKDLANMLGVYSERTGTTEISMSSEFLEGVPTLVPSDEKRRLYMGTGRNDTFTY 922

Query: 604  AGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYL 425
            AGCQG+T P+VQI+LD++T +C+  V+Y+ALSRA D IHF+N++A SSAFWEKL++TPYL
Sbjct: 923  AGCQGLTKPKVQIVLDHNTQVCSANVMYSALSRATDRIHFINTSANSSAFWEKLDSTPYL 982

Query: 424  KTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEA 245
            KTFLS+VRE  ++E+                  VE++ + L+++KE L +KF+REI ++A
Sbjct: 983  KTFLSVVREHALKEYEPAEAEPIKEPEPQTHMCVENEESVLEEYKEELLEKFDREIHSDA 1042

Query: 244  HGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWA 65
            HGH+NCVQ +D T QLFSHQ+AKDE LLW TI ARL  S  E+N  E  +K+D+GD+L+ 
Sbjct: 1043 HGHSNCVQTEDTTIQLFSHQEAKDETLLWATIDARLKTSNQESNFREFLSKRDIGDVLFL 1102

Query: 64   NYRKAMKLPKEQPEFSEDLW 5
            NY+KAM LPKE   FS+++W
Sbjct: 1103 NYQKAMGLPKEPIPFSQEVW 1122


>gb|AAZ82034.1| RNA-dependent RNA polymerase [Potato virus X]
          Length = 1456

 Score =  747 bits (1929), Expect = 0.0
 Identities = 437/1031 (42%), Positives = 585/1031 (56%), Gaps = 77/1031 (7%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL +  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL    +     T+T Q  E+  ANHL+  +RG+ LT
Sbjct: 218  FAHLQWLKVGKIKWRDPKDGLLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  Y   E+  LV+Y EF A L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGPPGFH------------------- 1904
             G   + KL+KA+D+ P+   F V T + R   L+    F                    
Sbjct: 398  FGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDL 457

Query: 1903 -NPFTK--PHPVNPE-DADTMRAFREFSYTAETSTPTTIADSLEGSAENLASHT----SL 1748
             + FT+   + VN E D   +R   E     E   P    +     AE   +      S 
Sbjct: 458  LDCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR 517

Query: 1747 KVGHADLSTEQ--------LRALHELGSTRLGGPL--------LPRIAPDEQDSEXXXXX 1616
            +V H  +   +        +RA  E  S  + G +        LP  +   Q+       
Sbjct: 518  EVKHQAVKKAKRLAEIQGSMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELTLPITK 577

Query: 1615 XXXXXPTKANTTLNQ---------GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1463
                    A++T +          G  A +         LPW  W+P+LNA+GF+ALEIQ
Sbjct: 578  PVPARWEDASSTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQ 637

Query: 1462 TDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT-LRSLNRFPTPWCPDRARARA 1289
             D S G +IMPI + V  L K   PE     G  K L   L ++NR P     D  RAR 
Sbjct: 638  RDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKELARELLAMNRSPATIPLDLLRARD 691

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKSQALQTLLRQ 1112
            + SDVKN R G     +  +W E  T   +++    +A  VIHGAGGSGKS A+Q  LR+
Sbjct: 692  YGSDVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALRE 751

Query: 1111 -NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
                  I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDDY KLP GYI
Sbjct: 752  IGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYI 811

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA    ++ ++LVILTGD RQS +HE  E+A I  L PAT  FS+  RYY+NATHRN K 
Sbjct: 812  EALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD 871

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAGCQGITAP 578
            LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAGCQG+T P
Sbjct: 872  LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKP 931

Query: 577  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 398
            +VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE
Sbjct: 932  KVQIVLDHNTQVCSTNVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVRE 991

Query: 397  DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 218
              ++E+                  VE++ + L+++KE L +KF+REI +E+HGH+NCVQ 
Sbjct: 992  QALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQT 1051

Query: 217  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLP 38
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  E  +KKD+GD+L+ NY+KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 37   KEQPEFSEDLW 5
            KE+  FS+++W
Sbjct: 1112 KERIPFSQEVW 1122


>dbj|BAE07083.1| RNA dependent RNA polymerase [Potato virus X]
          Length = 1456

 Score =  747 bits (1929), Expect = 0.0
 Identities = 440/1031 (42%), Positives = 587/1031 (56%), Gaps = 77/1031 (7%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL +  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL    +     T+T Q  E+  ANHL+  +RG+ LT
Sbjct: 218  FAHLQWLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   +  V  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRCVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  Y   E+  LV+Y EF A L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGPPGFH------------------- 1904
             G   + KL+KA+D+ P+   F V T + R   L+    F                    
Sbjct: 398  FGLEDYAKLVKAVDFHPVDFSFKVETWDFRFNPLQAWKAFRPREVSDVEEMESLFSDGDL 457

Query: 1903 -NPFTK--PHPVNPE-DADTMRAFREFSYTAETSTPTTIADSLEGSAEN----LASHTSL 1748
             + FT+   + VN E D   +R   E   + E   P    +     AE     L    S 
Sbjct: 458  LDCFTRMPSYAVNAEEDLAAIRKTPEMDVSQEGKEPAGDRNQYSNPAETFLNKLHKKHSR 517

Query: 1747 KVGHADLST--------EQLRALHELGSTRLGGPL--LPRIA--PDEQDSEXXXXXXXXX 1604
            +V H  +          E +RA  E  S  + G +  +P  A  P   D+          
Sbjct: 518  EVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQKLMLPITK 577

Query: 1603 XPT-------KANTTLNQ------GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1463
              T         +++L +      G  A +         LPW  W+P+LNA+GF+ALEIQ
Sbjct: 578  PVTARWEDASSTDSSLEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQ 637

Query: 1462 TDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT-LRSLNRFPTPWCPDRARARA 1289
             D S G +IMPI + V  L K   PE     G  K L   L ++NR P     D  RAR 
Sbjct: 638  RDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKELARELLAMNRSPATIPLDLLRARD 691

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKSQALQTLLRQ 1112
            + SDVKN R G     +  +W E  T   +++T   +A  VIHGAGGSGKS A+Q  LR+
Sbjct: 692  YGSDVKNKRIGALTKTQATSWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALRE 751

Query: 1111 -NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
                  I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDDY KLP GYI
Sbjct: 752  IGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALISGTGSIVIFDDYSKLPPGYI 811

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA    ++ ++LVILTGD RQS +HE  E+A I  L PAT  FS+  RYY+NATHRN K 
Sbjct: 812  EALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD 871

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAGCQGITAP 578
            LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAGCQG+T P
Sbjct: 872  LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRKLYMGTGRNDTFTYAGCQGLTKP 931

Query: 577  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 398
            +VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE
Sbjct: 932  KVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVRE 991

Query: 397  DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 218
              ++E+                  VE++ + L+++KE L +KF+REI  E+HGH+NCVQ 
Sbjct: 992  QALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHPESHGHSNCVQT 1051

Query: 217  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLP 38
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  E  +KKD+GD+L+ NY+KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 37   KEQPEFSEDLW 5
            KE+  FS+++W
Sbjct: 1112 KERIPFSQEVW 1122


>dbj|BAJ12041.1| RNA-dependent RNA polymerase [Potato virus X]
          Length = 1456

 Score =  747 bits (1929), Expect = 0.0
 Identities = 438/1031 (42%), Positives = 584/1031 (56%), Gaps = 77/1031 (7%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL +  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL    +     T+T Q  E+  ANHL+  +RG+ LT
Sbjct: 218  FAHLQWLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  Y   E+  LV+Y EF A L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGPPGFH------------------- 1904
             G   + KL+KA+D+ P+   F V T + R   L+    F                    
Sbjct: 398  FGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDL 457

Query: 1903 -NPFTK--PHPVNPE-DADTMRAFREFSYTAETSTPTTIADSLEGSAENLASHT----SL 1748
             + FT+   + VN E D   +R   E     E   P    +     AE   +      S 
Sbjct: 458  LDCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR 517

Query: 1747 KVGHADLST--------EQLRALHELGSTRLGGPL--------LPRIAPDEQDSEXXXXX 1616
            +V H  +          E +RA  E  S  + G +        LP  +   Q+       
Sbjct: 518  EVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELILPITK 577

Query: 1615 XXXXXPTKANTTLNQ---------GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1463
                    A+ T +          G  A +         LPW  W+P+LNA+GF+ALEIQ
Sbjct: 578  PVPARWEDASFTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQ 637

Query: 1462 TDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTT-LRSLNRFPTPWCPDRARARA 1289
             D S G +IMPI + V  L K   PE     G  K L   L ++NR P     D  RAR 
Sbjct: 638  RDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKELARELLAMNRSPATIPLDLLRARD 691

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAISVIHGAGGSGKSQALQTLLRQ 1112
            + SDVKN R G     +  +W E  T   +++    +A  VIHGAGGSGKS A+Q  LR+
Sbjct: 692  YGSDVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALRE 751

Query: 1111 -NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
                  I VVLPTNELRLDW KK+P+  P  F+T+E+A +     +VIFDDY KLP GYI
Sbjct: 752  IGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYI 811

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA    ++ ++LVILTGD RQS +HE  E+A I  L PAT  FS+  RYY+NATHRN K 
Sbjct: 812  EALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD 871

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAGCQGITAP 578
            LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAGCQG+T P
Sbjct: 872  LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKP 931

Query: 577  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 398
            +VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE
Sbjct: 932  KVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVRE 991

Query: 397  DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 218
              ++E+                  VE++ + L+++KE L +KF+REI +E+HGH+NCVQ 
Sbjct: 992  QALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQT 1051

Query: 217  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLP 38
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  E  +KKD+GD+L+ NY+KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 37   KEQPEFSEDLW 5
            KE+  FS+++W
Sbjct: 1112 KERIPFSQEVW 1122


>gb|AAK66552.1|AF373782_1 KR [Potato virus X]
          Length = 1456

 Score =  747 bits (1929), Expect = 0.0
 Identities = 439/1031 (42%), Positives = 581/1031 (56%), Gaps = 77/1031 (7%)
 Frame = -3

Query: 2866 PAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHFLSPSF 2687
            P KL +  R P   D F N  +EP+DV RYP++T+I +L  I T  A++ DTLHFL PS+
Sbjct: 98   PRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSY 157

Query: 2686 VTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHK 2507
            +   F + PKLQTLYATLVLP EA +++ S +P IY+L Y  DGF YIPG H G +Y H+
Sbjct: 158  IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHE 217

Query: 2506 YDQLEWLTVG-------------HLTAANQP----TITAQRLETKGANHLFIFQRGNYLT 2378
            +  L+WL VG             HL    +     T+T Q  E+  ANHL+  +RG+ LT
Sbjct: 218  FAHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLT 277

Query: 2377 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQL 2198
            PE RTF   + YV  P IFLP+ +NC+ PI K  MMQ+F Y+++VK AK  DI+AK RQL
Sbjct: 278  PEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQL 337

Query: 2197 ISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFF 2018
            I + +L  Y   E+  LV+Y EF A L + TCF D LSG L+ + L P+R+ IQ      
Sbjct: 338  IKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQL 397

Query: 2017 RGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGPPGFH------------------- 1904
             G   + KL+KA+D+ P+   F V T + R   L+    F                    
Sbjct: 398  FGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDL 457

Query: 1903 -NPFTK--PHPVN-PEDADTMRAFREFSYTAETSTPTTIADSLEGSAE----NLASHTSL 1748
             + FT+   + VN  ED   +R   E     E   P    +     AE     L    S 
Sbjct: 458  LDCFTRMPAYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDKNQYSNPAETFLNKLHRKHSR 517

Query: 1747 KVGHADLS--------TEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXPTK 1592
            +V H  +          E +RA  E  S  + G +    +  E  S            TK
Sbjct: 518  EVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSNARRELTLPTTK 577

Query: 1591 ANTTLNQGDHADQAPVNSDPATLP-----------------WVAWLPKLNALGFEALEIQ 1463
                  +      + V  +   LP                 W  W+P+LNA+GF+ALEIQ
Sbjct: 578  PVHARWEDASFTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQ 637

Query: 1462 TDPSTGEVIMPIAD-VRDLPKATLPEHWNEPGLSKVLT-TLRSLNRFPTPWCPDRARARA 1289
             D S G +IMPI + V  L K   PE     G  K L   L ++NR P     D  RAR 
Sbjct: 638  RDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKELARELLAMNRSPATIPLDLLRARD 691

Query: 1288 FTSDVKNSRTGKALHRETQTWKETQTMLTDNVT-ANLAISVIHGAGGSGKSQALQTLLRQ 1112
            + SDVKN R G     +  +W E  T   +++T   +A  VIHGAGGSGKS A+Q  LR+
Sbjct: 692  YGSDVKNKRIGAITKTQATSWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALRE 751

Query: 1111 -NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYI 935
                  I VVLPTNELRLDW KK+PH  P  F+T+E+A +     +VIFDDY KLP GYI
Sbjct: 752  IGKGSDITVVLPTNELRLDWSKKVPHTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYI 811

Query: 934  EAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKF 755
            EA    ++ ++LVILTGD RQS +HE  E+A I  L PAT  FS+  RYY+NATHRN K 
Sbjct: 812  EALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD 871

Query: 754  LANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG-HKVSTYAGCQGITAP 578
            LAN LGVYS  +   +++   +   G+  LVPS  K+  +   G +   TYAGCQG+T P
Sbjct: 872  LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKP 931

Query: 577  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 398
            +VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE
Sbjct: 932  KVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVRE 991

Query: 397  DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 218
              + E+                  VE++ + L+++KE L +KF+REI +E+HGH+NCVQ 
Sbjct: 992  QALREYEPAEAKPIQEPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQT 1051

Query: 217  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEELRAKKDLGDILWANYRKAMKLP 38
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  E  +KKD+GD+L+ NY+KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 37   KEQPEFSEDLW 5
            KE+  FS+++W
Sbjct: 1112 KERIPFSQEVW 1122