BLASTX nr result
ID: Rehmannia24_contig00000011
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00000011
(1033 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 522 e-146
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 520 e-145
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 516 e-144
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 514 e-143
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 512 e-143
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 511 e-142
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 509 e-142
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 509 e-142
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 509 e-142
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 508 e-141
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 472 e-131
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 362 2e-97
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 358 2e-96
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 348 2e-93
gb|AFM77886.1| replicase [Hosta virus X] 328 2e-87
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA... 328 2e-87
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 328 3e-87
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 315 1e-83
gb|AAF67818.1|AF111193_1 replicase [Potato virus X] 310 6e-82
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 310 6e-82
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 522 bits (1345), Expect = e-146
Identities = 253/258 (98%), Positives = 257/258 (99%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1125 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1184
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1185 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1244
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1245 DIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1304
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAH
Sbjct: 1305 KGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAH 1364
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGSPFL
Sbjct: 1365 LHQVTVRDLVKFGGSPFL 1382
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 520 bits (1338), Expect = e-145
Identities = 251/258 (97%), Positives = 257/258 (99%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAH
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAH 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGSPFL
Sbjct: 1360 LHQVTVRDLVKFGGSPFL 1377
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 516 bits (1329), Expect = e-144
Identities = 250/258 (96%), Positives = 256/258 (99%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQ
Sbjct: 1108 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQ 1167
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1168 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1227
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1228 NIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITP 1287
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAH
Sbjct: 1288 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAH 1347
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGSPFL
Sbjct: 1348 LHQVTVRDLVKFGGSPFL 1365
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 514 bits (1324), Expect = e-143
Identities = 248/258 (96%), Positives = 255/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 451 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQ 510
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 511 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRF 570
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 571 DIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 630
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAH
Sbjct: 631 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAH 690
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGSPFL
Sbjct: 691 LHQVTVRDLVKFGGSPFL 708
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 512 bits (1319), Expect = e-143
Identities = 248/258 (96%), Positives = 254/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 511 bits (1316), Expect = e-142
Identities = 247/258 (95%), Positives = 254/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 509 bits (1310), Expect = e-142
Identities = 247/258 (95%), Positives = 253/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 509 bits (1310), Expect = e-142
Identities = 247/258 (95%), Positives = 253/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 509 bits (1310), Expect = e-142
Identities = 247/258 (95%), Positives = 253/258 (98%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 508 bits (1308), Expect = e-141
Identities = 246/258 (95%), Positives = 252/258 (97%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRF 1239
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDLVKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 472 bits (1215), Expect = e-131
Identities = 225/258 (87%), Positives = 241/258 (93%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQ
Sbjct: 1101 MARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQ 1160
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1161 FEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRF 1220
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
IP+ AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITP
Sbjct: 1221 HIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITP 1280
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP QAH
Sbjct: 1281 KGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAH 1340
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQVTVRDL KFGGSPFL
Sbjct: 1341 LHQVTVRDLTKFGGSPFL 1358
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 362 bits (928), Expect = 2e-97
Identities = 179/258 (69%), Positives = 203/258 (78%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQ
Sbjct: 1127 MARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQ 1186
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1187 FEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRF 1246
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITP
Sbjct: 1247 DIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITP 1306
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA
Sbjct: 1307 KGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAE 1364
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQ TVR LVK +L
Sbjct: 1365 LHQETVRTLVKLTKGTYL 1382
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 358 bits (919), Expect = 2e-96
Identities = 178/258 (68%), Positives = 202/258 (78%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQ
Sbjct: 1127 MARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQ 1186
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1187 FEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRF 1246
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITP
Sbjct: 1247 DIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITP 1306
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KGLIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA
Sbjct: 1307 KGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAE 1364
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQ TVR LVK +L
Sbjct: 1365 LHQETVRTLVKLTKGAYL 1382
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 348 bits (894), Expect = 2e-93
Identities = 176/263 (66%), Positives = 200/263 (76%), Gaps = 5/263 (1%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR RD P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQ
Sbjct: 1194 MARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQ 1253
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+ N+PEWV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF
Sbjct: 1254 FEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRF 1313
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCG 526
+IPEG AQ D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCG
Sbjct: 1314 DIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCG 1368
Query: 527 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 706
YLITPKGLIKDPLKL AS LAK + K + N + NY+ D KLAY LGDDL +LL+
Sbjct: 1369 YLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLT 1424
Query: 707 PRQAHLHQVTVRDLVKFGGSPFL 775
P QA LHQVTVRD++K G S L
Sbjct: 1425 PEQAQLHQVTVRDMIKLGASDIL 1447
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 328 bits (842), Expect = 2e-87
Identities = 163/254 (64%), Positives = 193/254 (75%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR RD P +I+INCEKTP +S +V WDFS +YANDFTAFDQSQDGAMLQ
Sbjct: 1200 MARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQ 1259
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF
Sbjct: 1260 FEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRF 1319
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+PE AQ+YAGDD A+++VCPEK SF +R+ L++KP PQ +G WAEFCG LITP
Sbjct: 1320 NVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITP 1379
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
+G+IKDP+KLHAS LA K G I + +Y D KL+Y LGD LQ+LLS Q
Sbjct: 1380 RGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCR 1435
Query: 722 LHQVTVRDLVKFGG 763
HQVTVR+LVKF G
Sbjct: 1436 THQVTVRELVKFAG 1449
>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
[Hosta virus X]
Length = 1507
Score = 328 bits (842), Expect = 2e-87
Identities = 163/254 (64%), Positives = 193/254 (75%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR RD P +I+INCEKTP +S +V WDFS +YANDFTAFDQSQDGAMLQ
Sbjct: 1234 MARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQ 1293
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF
Sbjct: 1294 FEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRF 1353
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+PE AQ+YAGDD A+++VCPEK SF +R+ L++KP PQ +G WAEFCG LITP
Sbjct: 1354 NVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITP 1413
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
+G+IKDP+KLHAS LA K G I + +Y D KL+Y LGD LQ+LLS Q
Sbjct: 1414 RGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCR 1469
Query: 722 LHQVTVRDLVKFGG 763
HQVTVR+LVKF G
Sbjct: 1470 THQVTVRELVKFAG 1483
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 328 bits (840), Expect = 3e-87
Identities = 161/258 (62%), Positives = 196/258 (75%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQDGAMLQ
Sbjct: 1448 MARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQ 1507
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF
Sbjct: 1508 FEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRF 1567
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
++P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFCGYLITP
Sbjct: 1568 DVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITP 1627
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
G++KDP KL A++ LA+ Q K + +++LD KLAY D L ++LS +Q
Sbjct: 1628 LGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLSEKQQE 1681
Query: 722 LHQVTVRDLVKFGGSPFL 775
LHQ+TVR LVK G S L
Sbjct: 1682 LHQLTVRTLVKSGASEIL 1699
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 315 bits (808), Expect = 1e-83
Identities = 148/258 (57%), Positives = 190/258 (73%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMRR R+ P ++ INCE++P+ +S W+ N W+F +YANDFT FDQSQDGAMLQ
Sbjct: 1247 MARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGAMLQ 1306
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FEILKAK+ ++PEWV+EGYLDIK + +F GTL IMRLTGEGPTFDANTECNIAYTH RF
Sbjct: 1307 FEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTHLRF 1366
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+P+GTAQ YAGDD +A + E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L TP
Sbjct: 1367 NVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFLFTP 1426
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
G +K+PLK+ A +ELAK + + + +Y+LD L Y GD LQ + S +Q
Sbjct: 1427 LGALKEPLKMLAVVELAKQ------RGELKKNMRSYALDVLLNYQHGDALQHVFSEKQLE 1480
Query: 722 LHQVTVRDLVKFGGSPFL 775
HQ+TVR+L+KFGGS L
Sbjct: 1481 AHQITVRNLIKFGGSSIL 1498
>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
Length = 1456
Score = 310 bits (794), Expect = 6e-82
Identities = 148/253 (58%), Positives = 186/253 (73%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 181
MARYMR FR A P + INCE TP+D+S W LN W+F +PS AND+TAFDQSQDGAMLQ
Sbjct: 1197 MARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFGRPSLANDYTAFDQSQDGAMLQ 1256
Query: 182 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 361
FE+LKAK+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F
Sbjct: 1257 FEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKF 1316
Query: 362 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 541
+IP GTAQ+YAGDD A+ V KPSF L++++ L++KP T Q++G W EFCG+LITP
Sbjct: 1317 DIPAGTAQVYAGDDSALDCVPEVKPSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITP 1376
Query: 542 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAH 721
KG++KDP+KLH SL+LA+A K + +Y +D AY D L DL +Q
Sbjct: 1377 KGVMKDPIKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFDEKQCQ 1430
Query: 722 LHQVTVRDLVKFG 760
H +T R L+K G
Sbjct: 1431 AHTLTCRTLIKSG 1443
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 310 bits (794), Expect = 6e-82
Identities = 158/261 (60%), Positives = 191/261 (73%), Gaps = 3/261 (1%)
Frame = +2
Query: 2 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN---YWDFSKPSYANDFTAFDQSQDGA 172
MARYMRR R+ P NI INCE TP+DL+ W + W F+ PS ANDFTAFDQSQDGA
Sbjct: 1276 MARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDGA 1335
Query: 173 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 352
MLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH
Sbjct: 1336 MLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTH 1395
Query: 353 TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 532
+F+IP+GTAQ+YAGDD AI P + SF L++ ++ L++KPA QE+G WAEFCGY
Sbjct: 1396 AKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYR 1455
Query: 533 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPR 712
ITPKG IKDP KLHASL L +KK G + NV+ +Y LD LAY D+L +LLS
Sbjct: 1456 ITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDELHELLSEE 1509
Query: 713 QAHLHQVTVRDLVKFGGSPFL 775
+ LH TVR LVK GG L
Sbjct: 1510 ELRLHYDTVRTLVKSGGGEVL 1530