BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000005
         (1708 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1033   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1027   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1022   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...  1021   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1019   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1019   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1018   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1018   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1018   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1018   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   912   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             751   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   748   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   721   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   687   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               674   0.0  
gb|AFM77886.1| replicase [Hosta virus X]                              672   0.0  
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   672   0.0  
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   671   0.0  
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   643   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 508/549 (92%), Positives = 522/549 (95%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS HFVNS
Sbjct: 817  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNS 876

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFS                 VE+ TT LDD
Sbjct: 877  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDD 936

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            F+E L DKFDREIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEA
Sbjct: 937  FREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 996

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            NIEEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGE
Sbjct: 997  NIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGE 1056

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1057 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1116

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1117 DALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYF 1176

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQI
Sbjct: 1177 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQI 1236

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1237 YAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1296

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDL
Sbjct: 1297 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDL 1356

Query: 1622 VKFGGSPFL 1648
            VKFGGSPFL
Sbjct: 1357 VKFGGSPFL 1365


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1027 bits (2656), Expect = 0.0
 Identities = 505/549 (91%), Positives = 517/549 (94%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEA
Sbjct: 949  FKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            +ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 EALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGSPFL
Sbjct: 1369 VKFGGSPFL 1377


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1022 bits (2642), Expect = 0.0
 Identities = 503/549 (91%), Positives = 515/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score = 1021 bits (2639), Expect = 0.0
 Identities = 498/549 (90%), Positives = 518/549 (94%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NS
Sbjct: 160  LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINS 219

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVRED++ EFS                 VED TTTLDD
Sbjct: 220  NAQSSAFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDD 279

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            F+E L DKFDREIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEA
Sbjct: 280  FREELQDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEA 339

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+
Sbjct: 340  NLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGD 399

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 400  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 459

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 460  DALRPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 519

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQI
Sbjct: 520  NLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQI 579

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 580  YAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 639

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDL
Sbjct: 640  LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDL 699

Query: 1622 VKFGGSPFL 1648
            VKFGGSPFL
Sbjct: 700  VKFGGSPFL 708


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 500/549 (91%), Positives = 516/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            LMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+
Sbjct: 834  LMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNT 893

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKI EF                  VE+  TTLDD
Sbjct: 894  NAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDD 953

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEA
Sbjct: 954  FKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEA 1013

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            NIEEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGE
Sbjct: 1014 NIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGE 1073

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1074 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFR 1133

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1134 DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1193

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1194 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1253

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1254 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1313

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDL
Sbjct: 1314 LHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDL 1373

Query: 1622 VKFGGSPFL 1648
            VKFGGSPFL
Sbjct: 1374 VKFGGSPFL 1382


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 501/549 (91%), Positives = 514/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 502/549 (91%), Positives = 514/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 502/549 (91%), Positives = 514/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 502/549 (91%), Positives = 514/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 501/549 (91%), Positives = 513/549 (93%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS
Sbjct: 829  LVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 888

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+                 VED TTTLDD
Sbjct: 889  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDD 948

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            FKE L DKFDREIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEA
Sbjct: 949  FKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEA 1008

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGE
Sbjct: 1009 NLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGE 1068

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1069 RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 1128

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF
Sbjct: 1129 DALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1188

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQI
Sbjct: 1189 NLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQI 1248

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK
Sbjct: 1249 YAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1308

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDL
Sbjct: 1309 LHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDL 1368

Query: 1622 VKFGGSPFL 1648
            VKFGGS FL
Sbjct: 1369 VKFGGSSFL 1377


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  912 bits (2357), Expect = 0.0
 Identities = 446/549 (81%), Positives = 485/549 (88%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAF DAGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NS
Sbjct: 810  LVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINS 869

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            NAQSSAFWEKLEATPYLKTFLSLVRE K+EEF+                 VE+ + TL  
Sbjct: 870  NAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGL 929

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
             ++SL+DK+DREI    HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEA
Sbjct: 930  IQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEA 989

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGE
Sbjct: 990  NLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGE 1049

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+R
Sbjct: 1050 RRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYR 1109

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            DAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+F
Sbjct: 1110 DALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFF 1169

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            NLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+  AQ+
Sbjct: 1170 NLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQL 1229

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLK
Sbjct: 1230 YAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLK 1289

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP QAHLHQVTVRDL
Sbjct: 1290 LHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAHLHQVTVRDL 1349

Query: 1622 VKFGGSPFL 1648
             KFGGSPFL
Sbjct: 1350 TKFGGSPFL 1358


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  751 bits (1939), Expect = 0.0
 Identities = 375/549 (68%), Positives = 426/549 (77%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+
Sbjct: 836  LLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINT 895

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
                S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  
Sbjct: 896  GPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGA 955

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            + E + +KF+REIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEA
Sbjct: 956  YMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEA 1015

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GE
Sbjct: 1016 NWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGE 1075

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1076 RRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFR 1135

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            + L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAMLQFEILKAK+F
Sbjct: 1136 EVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHF 1195

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+
Sbjct: 1196 NIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQL 1255

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP K
Sbjct: 1256 YAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAK 1315

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            L ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR L
Sbjct: 1316 LFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTL 1373

Query: 1622 VKFGGSPFL 1648
            VK     +L
Sbjct: 1374 VKLTKGTYL 1382


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  748 bits (1930), Expect = 0.0
 Identities = 374/549 (68%), Positives = 425/549 (77%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+
Sbjct: 836  LLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINT 895

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
                S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  
Sbjct: 896  GPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGA 955

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            + E + +KF+REIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEA
Sbjct: 956  YMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEA 1015

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GE
Sbjct: 1016 NWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGE 1075

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR
Sbjct: 1076 RRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFR 1135

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            +AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AMLQFEILKAK+F
Sbjct: 1136 EALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHF 1195

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+
Sbjct: 1196 NIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQL 1255

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP K
Sbjct: 1256 YAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAK 1315

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            L ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR L
Sbjct: 1316 LFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTL 1373

Query: 1622 VKFGGSPFL 1648
            VK     +L
Sbjct: 1374 VKLTKGAYL 1382


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  721 bits (1862), Expect = 0.0
 Identities = 369/554 (66%), Positives = 422/554 (76%), Gaps = 5/554 (0%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKAAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+
Sbjct: 904  LIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINT 963

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
               SS FWEKLEATPYLKTFLS+VREDKI E+                  VE+  T L++
Sbjct: 964  APTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEE 1023

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
            F E L+ K +REIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + 
Sbjct: 1024 FTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQH 1083

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N  EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q+TYL KS   +K GE
Sbjct: 1084 NWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGE 1142

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            RRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R
Sbjct: 1143 RRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIR 1202

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            D   P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ 
Sbjct: 1203 DIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHH 1262

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTHTRF+IPEG AQ 
Sbjct: 1263 NIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ- 1321

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLI 1426
                D A+   C EKPSF L+++ ++L+      KP    Q  G+WAEFCGYLITPKGLI
Sbjct: 1322 ----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLI 1377

Query: 1427 KDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQV 1606
            KDPLKL AS  LAK + K      + N + NY+ D KLAY LGDDL +LL+P QA LHQV
Sbjct: 1378 KDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTPEQAQLHQV 1433

Query: 1607 TVRDLVKFGGSPFL 1648
            TVRD++K G S  L
Sbjct: 1434 TVRDMIKLGASDIL 1447


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  687 bits (1773), Expect = 0.0
 Identities = 340/549 (61%), Positives = 411/549 (74%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            ++KK  + + G+K STYAGCQGITAPR+QILLD DTT+C  EVLYTALSRAV  IHF+N+
Sbjct: 1157 IIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVHGIHFINT 1216

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
             A S AFW+KL ATPYLKTFL   RE++++E                   VE++   L++
Sbjct: 1217 GATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVENEKFVLEE 1276

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
              E L +K DREI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL IS P+A
Sbjct: 1277 QVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKA 1336

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            NI EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K I+ +K GE
Sbjct: 1337 NIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPINMLKNGE 1396

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
             RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R
Sbjct: 1397 YRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMR 1456

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            +A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGAMLQFEILKAK+ 
Sbjct: 1457 EAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFEILKAKHH 1516

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++P+GTAQ+
Sbjct: 1517 SIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDVPKGTAQL 1576

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYLITP G++KDP K
Sbjct: 1577 YAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLGIMKDPAK 1636

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            L A++ LA+ Q K      +     +++LD KLAY   D L ++LS +Q  LHQ+TVR L
Sbjct: 1637 LAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLSEKQQELHQLTVRTL 1690

Query: 1622 VKFGGSPFL 1648
            VK G S  L
Sbjct: 1691 VKSGASEIL 1699


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  674 bits (1738), Expect = 0.0
 Identities = 327/549 (59%), Positives = 413/549 (75%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KK ++T+ G+K STYAGCQGITA RVQ+LLD DTT+C+ +VLYTALSRAV ++HF+N+
Sbjct: 1125 LIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINT 1184

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            +A SSAFW+KL +TPYLKTFLS +RED++ E                   VE++  +L+D
Sbjct: 1185 SATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLED 1244

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
              E L +K +RE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+A
Sbjct: 1245 KVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKA 1304

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K ++ IK GE
Sbjct: 1305 NMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGE 1364

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
             RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYMRR R
Sbjct: 1365 NRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIR 1424

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
             A  P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQFE+LKAK+ 
Sbjct: 1425 QAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHH 1484

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF I + TAQ+
Sbjct: 1485 NIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDTAQL 1544

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD A +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY ITP GLIK+P K
Sbjct: 1545 YAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKK 1604

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            L A+L LA  Q K  +KD ++    +YS D  LAY   D+L ++    Q   HQ TVR L
Sbjct: 1605 LQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDELYEIFDENQMRDHQTTVRTL 1658

Query: 1622 VKFGGSPFL 1648
            VKFGG+  L
Sbjct: 1659 VKFGGNEIL 1667


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  672 bits (1733), Expect = 0.0
 Identities = 333/545 (61%), Positives = 399/545 (73%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKA   + GHK STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS
Sbjct: 909  LLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNS 968

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
               +  FW KLEATPYLKTFL L RE+KI E +                 VE        
Sbjct: 969  GPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSS 1028

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
              E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EA
Sbjct: 1029 ITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEA 1088

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ IK GE
Sbjct: 1089 NVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGE 1148

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            +RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR R
Sbjct: 1149 KRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIR 1208

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            D   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ 
Sbjct: 1209 DRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFH 1268

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+
Sbjct: 1269 NIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQV 1328

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+K
Sbjct: 1329 YAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVK 1388

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHAS  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q   HQVTVR+L
Sbjct: 1389 LHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCRTHQVTVREL 1444

Query: 1622 VKFGG 1636
            VKF G
Sbjct: 1445 VKFAG 1449


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  672 bits (1733), Expect = 0.0
 Identities = 333/545 (61%), Positives = 399/545 (73%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L+KKA   + GHK STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS
Sbjct: 943  LLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNS 1002

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
               +  FW KLEATPYLKTFL L RE+KI E +                 VE        
Sbjct: 1003 GPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSS 1062

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
              E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EA
Sbjct: 1063 ITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEA 1122

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ IK GE
Sbjct: 1123 NVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGE 1182

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
            +RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR R
Sbjct: 1183 KRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIR 1242

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            D   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ 
Sbjct: 1243 DRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFH 1302

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+
Sbjct: 1303 NIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQV 1362

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+K
Sbjct: 1363 YAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVK 1422

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            LHAS  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q   HQVTVR+L
Sbjct: 1423 LHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCRTHQVTVREL 1478

Query: 1622 VKFGG 1636
            VKF G
Sbjct: 1479 VKFAG 1483


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  671 bits (1732), Expect = 0.0
 Identities = 324/549 (59%), Positives = 404/549 (73%)
 Frame = +2

Query: 2    LMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNS 181
            L++K  +T+ G+K STYAGCQGITAP+VQ+LL++DTT+CT +VLYTALSRAV SIHF+N+
Sbjct: 956  LIQKKTYTELGYKTSTYAGCQGITAPKVQVLLNSDTTLCTDKVLYTALSRAVHSIHFINT 1015

Query: 182  NAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDD 361
            +A S+AFW+KL ATPYLKTFLS VRE  +                     VE+    L+ 
Sbjct: 1016 SASSAAFWDKLNATPYLKTFLSTVREQSLASAKPREEGPTPVAAPKTHVPVENSNLCLEG 1075

Query: 362  FKESLSDKFDREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEA 541
              E L +K DREIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW TI+ARL ISTPE 
Sbjct: 1076 AVEKLLEKHDREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWATIEARLKISTPER 1135

Query: 542  NIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGE 721
            N+ E+  K+++GD+LW +Y  AM LP+E   F + LW  CAEEVQ TYL K +  +K GE
Sbjct: 1136 NLAEYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCAEEVQKTYLSKPMHMLKNGE 1195

Query: 722  RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR 901
             RQSPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R
Sbjct: 1196 LRQSPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQAAVMLYGTMARYMRRMR 1255

Query: 902  DALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYF 1081
            +   P ++ INCE++P+ +S W+ N W+F   +YANDFT FDQSQDGAMLQFEILKAK+ 
Sbjct: 1256 EVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGAMLQFEILKAKHH 1315

Query: 1082 NLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQI 1261
            ++PEWV+EGYLDIK +  +F GTL IMRLTGEGPTFDANTECNIAYTH RF +P+GTAQ 
Sbjct: 1316 SIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTHLRFNVPKGTAQA 1375

Query: 1262 YAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLK 1441
            YAGDD  +A +  E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L TP G +K+PLK
Sbjct: 1376 YAGDDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFLFTPLGALKEPLK 1435

Query: 1442 LHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDL 1621
            + A +ELAK       +  +   + +Y+LD  L Y  GD LQ + S +Q   HQ+TVR+L
Sbjct: 1436 MLAVVELAKQ------RGELKKNMRSYALDVLLNYQHGDALQHVFSEKQLEAHQITVRNL 1489

Query: 1622 VKFGGSPFL 1648
            +KFGGS  L
Sbjct: 1490 IKFGGSSIL 1498


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  643 bits (1658), Expect = 0.0
 Identities = 310/529 (58%), Positives = 392/529 (74%)
 Frame = +2

Query: 47   TYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATP 226
            TYAGCQG+T P+VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TP
Sbjct: 921  TYAGCQGLTKPKVQIVLDHNTQVCSTNVMYTALSRATDRIHFVNTSANSSAFWEKLDSTP 980

Query: 227  YLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFDREIFT 406
            YLKTFLS+VRE  ++E+                  VE++ + L+++KE L +KFDREI +
Sbjct: 981  YLKTFLSVVREQTLKEYEPAEVEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHS 1040

Query: 407  EAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDIL 586
            E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL  S  E N  EF +KKD+GD+L
Sbjct: 1041 ESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVL 1100

Query: 587  WANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIF 766
            + NY KAM LPKE+  FS+++W  CA EVQ+ YL KS   +  G  RQSPDF E++I++F
Sbjct: 1101 FLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVF 1160

Query: 767  LKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKT 946
            LKSQWV K+EKLG  KIKPGQTIA+F Q  VML+GTMARYMR FR A  P  + INCE T
Sbjct: 1161 LKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETT 1220

Query: 947  PQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKL 1126
            P+D+S W LN W+F +PS AND+TAFDQSQDGAMLQFE+LKAK+  +PE +I+ Y+DIK 
Sbjct: 1221 PEDMSAWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKT 1280

Query: 1127 SPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEK 1306
            + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTAQ+YAGDD A+  V   K
Sbjct: 1281 NAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVK 1340

Query: 1307 PSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAG 1486
            PSF  L++++ L++KP  T Q++G W EFCG+LITPKG++KDP+KLH SL+LA+A     
Sbjct: 1341 PSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEA----- 1395

Query: 1487 VKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFG 1633
             K  +     +Y +D   AY   D L DL   +Q   H +T R L+K G
Sbjct: 1396 -KGELKKCQDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSG 1443