BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00000004
         (1267 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 826   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   820   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   818   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   815   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   815   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   815   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   814   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   814   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   814   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   813   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   719   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             608   e-171
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   604   e-170
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   565   e-158
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   546   e-153
gb|AFM77886.1| replicase [Hosta virus X]                              536   e-150
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   536   e-150
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               531   e-148
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   525   e-146
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   523   e-146

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  826 bits (2133), Expect = 0.0
 Identities = 398/422 (94%), Positives = 413/422 (97%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 926  PVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 985

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            KARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYL
Sbjct: 986  KARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYL 1045

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1046 KKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1105

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAM
Sbjct: 1106 GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAM 1165

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1166 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 1225

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1226 RFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLI 1285

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQ
Sbjct: 1286 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQ 1345

Query: 1261 AH 1266
            AH
Sbjct: 1346 AH 1347


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  820 bits (2118), Expect = 0.0
 Identities = 397/422 (94%), Positives = 407/422 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 AH 1266
            AH
Sbjct: 1358 AH 1359


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  818 bits (2112), Expect = 0.0
 Identities = 396/421 (94%), Positives = 406/421 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  815 bits (2106), Expect = 0.0
 Identities = 393/422 (93%), Positives = 408/422 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I
Sbjct: 943  PVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMI 1002

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYL
Sbjct: 1003 RARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYL 1062

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLY
Sbjct: 1063 KKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLY 1122

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1123 GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 1182

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1183 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 1242

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1243 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1302

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1303 TPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1362

Query: 1261 AH 1266
            AH
Sbjct: 1363 AH 1364


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  815 bits (2105), Expect = 0.0
 Identities = 392/422 (92%), Positives = 409/422 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDF+E L DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI
Sbjct: 269  PVEDGTTTLDDFREELQDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETI 328

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYL
Sbjct: 329  NARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYL 388

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 389  KKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 448

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAM
Sbjct: 449  GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAM 508

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 509  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHT 568

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 569  RFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 628

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 629  TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 688

Query: 1261 AH 1266
            AH
Sbjct: 689  AH 690


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  815 bits (2104), Expect = 0.0
 Identities = 394/421 (93%), Positives = 405/421 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  814 bits (2103), Expect = 0.0
 Identities = 395/421 (93%), Positives = 405/421 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  814 bits (2103), Expect = 0.0
 Identities = 395/421 (93%), Positives = 405/421 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  814 bits (2103), Expect = 0.0
 Identities = 395/421 (93%), Positives = 405/421 (96%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  813 bits (2101), Expect = 0.0
 Identities = 394/421 (93%), Positives = 404/421 (95%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI
Sbjct: 938  PVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETI 997

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYL
Sbjct: 998  NARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYL 1057

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
            KKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY
Sbjct: 1058 KKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 1117

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM
Sbjct: 1118 GTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 1177

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHT
Sbjct: 1178 LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHT 1237

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLI
Sbjct: 1238 RFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLI 1297

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP Q
Sbjct: 1298 TPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQ 1357

Query: 1261 A 1263
            A
Sbjct: 1358 A 1358


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  719 bits (1855), Expect = 0.0
 Identities = 347/422 (82%), Positives = 379/422 (89%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALLWETI
Sbjct: 919  PVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETI 978

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
             ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL
Sbjct: 979  DARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYL 1038

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLY
Sbjct: 1039 SKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLY 1098

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAM
Sbjct: 1099 GTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAM 1158

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1159 LQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHT 1218

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLI
Sbjct: 1219 RFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLI 1278

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP Q
Sbjct: 1279 TPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQ 1338

Query: 1261 AH 1266
            AH
Sbjct: 1339 AH 1340


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  608 bits (1567), Expect = e-171
 Identities = 300/421 (71%), Positives = 338/421 (80%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETI
Sbjct: 945  PVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETI 1004

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            KARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL
Sbjct: 1005 KARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYL 1064

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLY
Sbjct: 1065 SKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLY 1124

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAM
Sbjct: 1125 GTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAM 1184

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1185 LQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHT 1244

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLI
Sbjct: 1245 RFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLI 1304

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP Q
Sbjct: 1305 TPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQ 1362

Query: 1261 A 1263
            A
Sbjct: 1363 A 1363


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  604 bits (1558), Expect = e-170
 Identities = 299/421 (71%), Positives = 337/421 (80%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETI
Sbjct: 945  PVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETI 1004

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            KARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL
Sbjct: 1005 KARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYL 1064

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLY
Sbjct: 1065 SKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLY 1124

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AM
Sbjct: 1125 GTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAM 1184

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHT
Sbjct: 1185 LQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHT 1244

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLI
Sbjct: 1245 RFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLI 1304

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D L ++LSP Q
Sbjct: 1305 TPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQ 1362

Query: 1261 A 1263
            A
Sbjct: 1363 A 1363


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  565 bits (1456), Expect = e-158
 Identities = 288/426 (67%), Positives = 325/426 (76%), Gaps = 5/426 (1%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+  T L++F E L+ K EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETI
Sbjct: 1013 PVENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETI 1072

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            KARL IS  + N  EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q+TYL
Sbjct: 1073 KARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYL 1131

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLY
Sbjct: 1132 SKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLY 1191

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAM
Sbjct: 1192 GTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAM 1251

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTHT
Sbjct: 1252 LQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHT 1311

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEF 1065
            RF+IPEG AQ     D A+   C EKPSF L+++ ++L+      KP    Q  G+WAEF
Sbjct: 1312 RFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEF 1366

Query: 1066 CGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 1245
            CGYLITPKGLIKDPLKL AS  LAK + K      + N + NY+ D KLAY LGDDL +L
Sbjct: 1367 CGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLEL 1422

Query: 1246 LSPRQA 1263
            L+P QA
Sbjct: 1423 LTPEQA 1428


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  546 bits (1408), Expect = e-153
 Identities = 267/420 (63%), Positives = 325/420 (77%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE++   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI
Sbjct: 1266 PVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATI 1325

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL
Sbjct: 1326 EARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYL 1385

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLY
Sbjct: 1386 SKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLY 1445

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGAM
Sbjct: 1446 GTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAM 1505

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH 
Sbjct: 1506 LQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHL 1565

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYLI
Sbjct: 1566 RFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLI 1625

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TP G++KDP KL A++ LA+ Q K      +     +++LD KLAY   D L ++LS +Q
Sbjct: 1626 TPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLSEKQ 1679


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  536 bits (1381), Expect = e-150
 Identities = 263/420 (62%), Positives = 315/420 (75%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE          E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI
Sbjct: 1018 PVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETI 1077

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL
Sbjct: 1078 EARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYL 1137

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLY
Sbjct: 1138 SKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLY 1197

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAM
Sbjct: 1198 GTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAM 1257

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH 
Sbjct: 1258 LQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHL 1317

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LI
Sbjct: 1318 RFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLI 1377

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q
Sbjct: 1378 TPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQ 1433


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  536 bits (1381), Expect = e-150
 Identities = 263/420 (62%), Positives = 315/420 (75%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE          E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI
Sbjct: 1052 PVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETI 1111

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL
Sbjct: 1112 EARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYL 1171

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLY
Sbjct: 1172 SKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLY 1231

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAM
Sbjct: 1232 GTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAM 1291

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH 
Sbjct: 1292 LQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHL 1351

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LI
Sbjct: 1352 RFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLI 1411

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q
Sbjct: 1412 TPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQ 1467


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  531 bits (1369), Expect = e-148
 Identities = 256/420 (60%), Positives = 321/420 (76%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI
Sbjct: 1234 PVENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATI 1293

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL
Sbjct: 1294 EARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYL 1353

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLY
Sbjct: 1354 SKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLY 1413

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAM
Sbjct: 1414 GTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAM 1473

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HT
Sbjct: 1474 LQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHT 1533

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY I
Sbjct: 1534 RFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSI 1593

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TP GLIK+P KL A+L LA  Q K  +KD ++    +YS D  LAY   D+L ++    Q
Sbjct: 1594 TPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDELYEIFDENQ 1647


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  525 bits (1353), Expect = e-146
 Identities = 252/420 (60%), Positives = 312/420 (74%)
 Frame = +1

Query: 1    PVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETI 180
            PVE+    L+   E L +K +REIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW TI
Sbjct: 1065 PVENSNLCLEGAVEKLLEKHDREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWATI 1124

Query: 181  KARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYL 360
            +ARL ISTPE NL E+  K+++GD+LW +Y  AM LP+E   F + LW  CAEEVQ TYL
Sbjct: 1125 EARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCAEEVQKTYL 1184

Query: 361  KKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLY 540
             K +  +K GE RQSPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLY
Sbjct: 1185 SKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQAAVMLY 1244

Query: 541  GTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAM 720
            GTMARYMRR R+   P ++ INCE++P+ +S W+ N W+F   +YANDFT FDQSQDGAM
Sbjct: 1245 GTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGAM 1304

Query: 721  LQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT 900
            LQFEILKAK+ ++PEWV+EGYLDIK +  +F GTL IMRLTGEGPTFDANTECNIAYTH 
Sbjct: 1305 LQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTHL 1364

Query: 901  RFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLI 1080
            RF +P+GTAQ YAGDD  +A +  E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L 
Sbjct: 1365 RFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFLF 1424

Query: 1081 TPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            TP G +K+PLK+ A +ELAK       +  +   + +Y+LD  L Y  GD LQ + S +Q
Sbjct: 1425 TPLGALKEPLKMLAVVELAKQ------RGELKKNMRSYALDVLLNYQHGDALQHVFSEKQ 1478


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  523 bits (1347), Expect = e-146
 Identities = 251/419 (59%), Positives = 316/419 (75%)
 Frame = +1

Query: 4    VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 183
            VE++ + L+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI 
Sbjct: 1016 VENEESVLEEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATID 1075

Query: 184  ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 363
            ARL  S  E N  EF +KKD+GD+L+ NY KAM LPKE+  FS+++W  CA EVQ+ YL 
Sbjct: 1076 ARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLS 1135

Query: 364  KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 543
            KS   +  G  RQSPDF E++I++FLKSQWV K+EKLG  KIKPGQTIA+F Q  VML+G
Sbjct: 1136 KSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFG 1195

Query: 544  TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML 723
            TMARYMR FR A  P  + INCE TP+D+S W LN W+F +PS AND+TAFDQSQDGAML
Sbjct: 1196 TMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFGRPSLANDYTAFDQSQDGAML 1255

Query: 724  QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTR 903
            QFE+LKAK+  +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+
Sbjct: 1256 QFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTK 1315

Query: 904  FEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLIT 1083
            F+IP GTAQ+YAGDD A+  V   KPSF  L++++ L++KP  T Q++G W EFCG+LIT
Sbjct: 1316 FDIPAGTAQVYAGDDSALDCVPEVKPSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLIT 1375

Query: 1084 PKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQ 1260
            PKG++KDP+KLH SL+LA+A      K  +     +Y +D   AY   D L DL   +Q
Sbjct: 1376 PKGVMKDPIKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFDEKQ 1428