BLASTX nr result
ID: Rehmannia23_contig00032650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00032650
(343 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 84 5e-15
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 81 3e-14
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 80 4e-14
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 80 4e-14
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group] 83 4e-14
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 82 6e-14
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 82 6e-14
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 82 6e-14
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 81 2e-13
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 81 2e-13
gb|AAB82754.1| retrofit [Oryza longistaminata] 80 3e-13
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc... 80 3e-13
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 79 3e-13
ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa In... 77 4e-13
gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subc... 77 4e-13
gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymera... 79 5e-13
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 77 6e-13
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc... 77 7e-13
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa... 77 7e-13
dbj|BAA12897.1| reverse transcriptase [Oryza sativa Japonica Group] 79 8e-13
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 83.6 bits (205), Expect(2) = 5e-15
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE G+ N +C+L+KALYGL QA +AW+ +L T L LGF +SKADT LFF
Sbjct: 547 EVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFF 606
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 607 YNKGGCTIFILVY 619
Score = 22.7 bits (47), Expect(2) = 5e-15
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 648 DLGDLHYFLG 657
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 80.9 bits (198), Expect(2) = 3e-14
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E N VC+L+KALYGL QA +AW+ +L T L LGF SKADT LFF
Sbjct: 1006 EVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFF 1065
Query: 189 W------IFLCLY 209
+ IFL +Y
Sbjct: 1066 YKKGQVSIFLLIY 1078
Score = 22.7 bits (47), Expect(2) = 3e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 1107 DLGDLHYFLG 1116
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 80.5 bits (197), Expect(2) = 4e-14
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E + VC+L+KALYGL QA +AW+ +L LH LGF SKADT LFF
Sbjct: 1044 EVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFF 1103
Query: 189 W------IFLCLY 209
+ IFL +Y
Sbjct: 1104 YNKGSLTIFLLIY 1116
Score = 22.7 bits (47), Expect(2) = 4e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 1145 DLGDLHYFLG 1154
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 80.5 bits (197), Expect(2) = 4e-14
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E N VC+L+KALYGL QA +AW+ +L T L LGF SKADT LFF
Sbjct: 428 EVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFF 487
Query: 189 W------IFLCLY 209
+ IFL +Y
Sbjct: 488 YKKGQVSIFLLIY 500
Score = 22.7 bits (47), Expect(2) = 4e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 529 DLGDLHYFLG 538
>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
Length = 950
Score = 82.8 bits (203), Expect = 4e-14
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE + K N VC+L+KALYGL QA++AW+ +L L LGF ASKADT LFF
Sbjct: 126 EVYMQQPPGFESSSKPNYVCKLDKALYGLKQATRAWYSRLSKKLVELGFEASKADTSLFF 185
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 82.4 bits (202), Expect = 6e-14
Identities = 38/60 (63%), Positives = 45/60 (75%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE + K + VC+LNKALYGL QA +AW+ +L L LGF ASKADT LFF
Sbjct: 1061 EVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFF 1120
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 82.4 bits (202), Expect = 6e-14
Identities = 38/60 (63%), Positives = 45/60 (75%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE + K + VC+LNKALYGL QA +AW+ +L L LGF ASKADT LFF
Sbjct: 1061 EVYMQQPPGFESSSKRDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFF 1120
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 82.4 bits (202), Expect = 6e-14
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E + K N VC+L+KALYGL QA +AW+ +L L SLGF ASKADT LFF
Sbjct: 926 EVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFF 985
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 986 YNKGSVTIFVLVY 998
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 80.9 bits (198), Expect(2) = 2e-13
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E N VC+L+KALYGL QA +AW+ +L T L LGF SKADT LFF
Sbjct: 952 EVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFF 1011
Query: 189 W------IFLCLY 209
+ IFL +Y
Sbjct: 1012 YKKGQVSIFLLIY 1024
Score = 20.4 bits (41), Expect(2) = 2e-13
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+ LG
Sbjct: 1053 DLGDLHYLLG 1062
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/60 (63%), Positives = 44/60 (73%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE K N VC+L+KALYGL QA +AW+ +L L LGF ASKADT LFF
Sbjct: 1049 EVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFF 1108
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE + K + VC+L+KALYGL QA +AW+ +L L LGF ASKADT LFF
Sbjct: 1058 EVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFF 1117
>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 900
Score = 80.1 bits (196), Expect = 3e-13
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE A + + +C+L+KALYGL QA +AW+ +L L LGFS+SKADT LFF
Sbjct: 505 EVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFF 564
Query: 189 W 191
+
Sbjct: 565 Y 565
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 79.0 bits (193), Expect(2) = 3e-13
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E K N +C+L+KALYGL QA +AW+ +L L LGF SKADT LFF
Sbjct: 938 EVYMRQPPGYEDRNKPNYICKLDKALYGLKQAPRAWYSRLSMKLCDLGFQPSKADTSLFF 997
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 998 YNKGNIVIFVLIY 1010
Score = 21.2 bits (43), Expect(2) = 3e-13
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 313 DLGSLHFFLG 342
D G LH+FLG
Sbjct: 1039 DFGDLHYFLG 1048
>ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa Indica Group]
gi|289065044|ref|YP_003433855.1| hypothetical protein
OrrupM_p18 [Oryza rufipogon] gi|74100111|gb|AAZ99275.1|
hypothetical protein (mitochondrion) [Oryza sativa
Indica Group] gi|74100166|gb|AAZ99329.1| hypothetical
protein (mitochondrion) [Oryza sativa Japonica Group]
gi|74100220|gb|AAZ99382.1| hypothetical protein
(mitochondrion) [Oryza sativa Japonica Group]
gi|285026126|dbj|BAI67959.1| hypothetical protein [Oryza
rufipogon] gi|285026155|dbj|BAI67987.1| hypothetical
protein [Oryza sativa Indica Group]
gi|353685219|gb|AER12982.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|353685288|gb|AER13050.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277649|gb|AEZ03755.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277659|gb|AEZ03764.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|528540457|dbj|BAN67511.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
gi|528540460|dbj|BAN67513.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
Length = 490
Score = 76.6 bits (187), Expect(2) = 4e-13
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
++YM QPPG+E K + VC+L+KALYGL QA +AWF +L L +LGF SKAD LFF
Sbjct: 106 DVYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFF 165
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 166 YKKGTISIFVLIY 178
Score = 23.1 bits (48), Expect(2) = 4e-13
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG+LH+FLG
Sbjct: 207 DLGALHYFLG 216
>gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 308
Score = 76.6 bits (187), Expect(2) = 4e-13
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
++YM QPPG+E K + VC+L+KALYGL QA +AWF +L L +LGF SKAD LFF
Sbjct: 106 DVYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFF 165
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 166 YKKGTISIFVLIY 178
Score = 23.1 bits (48), Expect(2) = 4e-13
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG+LH+FLG
Sbjct: 207 DLGALHYFLG 216
>gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108710700|gb|ABF98495.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 757
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPGFE K + +C+L+K+LYGL QA +AWF +L L LGFSASKADT LFF
Sbjct: 458 EVYMDQPPGFEDVTKPHYICKLDKSLYGLKQAPRAWFARLSNKLIDLGFSASKADTSLFF 517
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 76.6 bits (187), Expect(2) = 6e-13
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E + VC+L+KALYGL QA +AW+ +L L+ +GF SKADT LFF
Sbjct: 860 EVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFF 919
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 920 YNKGDLIIFVLIY 932
Score = 22.7 bits (47), Expect(2) = 6e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 961 DLGDLHYFLG 970
>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 76.6 bits (187), Expect(2) = 7e-13
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
+++M QPPG+E K VC+L+KALYGL QA +AW+ +L T LH LGF +SK+DT LFF
Sbjct: 907 DVFMRQPPGYEQ--KDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFF 964
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 965 YSKGDVTIFMLVY 977
Score = 22.3 bits (46), Expect(2) = 7e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 1006 DLGRLHYFLG 1015
>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31433472|gb|AAP54977.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1031
Score = 76.6 bits (187), Expect(2) = 7e-13
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
+++M QPPG+E K VC+L+KALYGL QA +AW+ +L T LH LGF +SK+DT LFF
Sbjct: 645 DVFMRQPPGYEQ--KDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFF 702
Query: 189 W------IFLCLY 209
+ IF+ +Y
Sbjct: 703 YSKGDVTIFMLVY 715
Score = 22.3 bits (46), Expect(2) = 7e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 313 DLGSLHFFLG 342
DLG LH+FLG
Sbjct: 744 DLGRLHYFLG 753
>dbj|BAA12897.1| reverse transcriptase [Oryza sativa Japonica Group]
Length = 81
Score = 78.6 bits (192), Expect = 8e-13
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 9 EIYMCQPPGFEVAGKSNLVCRLNKALYGLNQASKAWFDKLKTVLHSLGFSASKADTYLFF 188
E+YM QPPG+E N VC+L+KALYGL QA +AW+ +L T L LGF SKADT LFF
Sbjct: 10 EVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFF 69
Query: 189 W 191
+
Sbjct: 70 Y 70