BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00032593
         (356 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]                58   2e-08
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...    56   4e-07
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca...    56   4e-07
gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [The...    56   4e-07
gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus pe...    58   6e-07
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                  49   8e-06

>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score = 57.8 bits (138), Expect(2) = 2e-08
 Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
 Frame = -1

Query: 269 KKPKISDASTSNKNKEASAKSEVKAED-EEDHVPIAQRMKKPTFADKK 129
           KKPK+SDAST   NK+AS K+E KA+D ++DHVPI+QRMKK   +  K
Sbjct: 257 KKPKLSDASTPVNNKQASKKAEPKADDSDDDHVPISQRMKKSATSGNK 304



 Score = 26.6 bits (57), Expect(2) = 2e-08
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -2

Query: 37  YSQSSKVPPSSG 2
           YS+SSKVPPSSG
Sbjct: 336 YSKSSKVPPSSG 347


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
           gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
           isoform 1 [Theobroma cacao]
          Length = 904

 Score = 56.2 bits (134), Expect(2) = 4e-07
 Identities = 27/51 (52%), Positives = 39/51 (76%)
 Frame = -1

Query: 278 SYKKKPKISDASTSNKNKEASAKSEVKAEDEEDHVPIAQRMKKPTFADKKI 126
           S  KKPK SDA T+ K K+ + K+E KA++++DH+PIAQRMKK T ++ K+
Sbjct: 265 SSAKKPKTSDAPTTMKTKQVTVKAE-KADEDDDHMPIAQRMKKSTASNSKL 314



 Score = 23.1 bits (48), Expect(2) = 4e-07
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 37  YSQSSKVPPSSG 2
           Y +S+KVPPSSG
Sbjct: 345 YIKSTKVPPSSG 356


>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
           gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
           isoform 3 [Theobroma cacao]
          Length = 836

 Score = 56.2 bits (134), Expect(2) = 4e-07
 Identities = 27/51 (52%), Positives = 39/51 (76%)
 Frame = -1

Query: 278 SYKKKPKISDASTSNKNKEASAKSEVKAEDEEDHVPIAQRMKKPTFADKKI 126
           S  KKPK SDA T+ K K+ + K+E KA++++DH+PIAQRMKK T ++ K+
Sbjct: 265 SSAKKPKTSDAPTTMKTKQVTVKAE-KADEDDDHMPIAQRMKKSTASNSKL 314



 Score = 23.1 bits (48), Expect(2) = 4e-07
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 37  YSQSSKVPPSSG 2
           Y +S+KVPPSSG
Sbjct: 345 YIKSTKVPPSSG 356


>gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
          Length = 733

 Score = 56.2 bits (134), Expect(2) = 4e-07
 Identities = 27/51 (52%), Positives = 39/51 (76%)
 Frame = -1

Query: 278 SYKKKPKISDASTSNKNKEASAKSEVKAEDEEDHVPIAQRMKKPTFADKKI 126
           S  KKPK SDA T+ K K+ + K+E KA++++DH+PIAQRMKK T ++ K+
Sbjct: 138 SSAKKPKTSDAPTTMKTKQVTVKAE-KADEDDDHMPIAQRMKKSTASNSKL 187



 Score = 23.1 bits (48), Expect(2) = 4e-07
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 37  YSQSSKVPPSSG 2
           Y +S+KVPPSSG
Sbjct: 218 YIKSTKVPPSSG 229


>gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
          Length = 790

 Score = 58.2 bits (139), Expect(2) = 6e-07
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = -1

Query: 278 SYKKKPKISDASTSNKNKEASAKSEVKAEDEEDHVPIAQRMKKPTFADK 132
           S  K+PK+SD+STS KN + SAK E K ED++D +PI+QR+KK T  +K
Sbjct: 151 SSAKRPKVSDSSTSIKNMQVSAKKEPKGEDDDDFIPISQRIKKATSDNK 199



 Score = 20.8 bits (42), Expect(2) = 6e-07
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 37  YSQSSKVPPSS 5
           YS+S+ VPPSS
Sbjct: 231 YSKSTTVPPSS 241


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score = 48.5 bits (114), Expect(2) = 8e-06
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
 Frame = -1

Query: 269 KKPKISDASTSNKNKEASAKSEVKAE-DEEDHVPIAQRMKKPTFADKK 129
           KKPK+S  +     K+AS K E KAE D++DH+PI+QR+KK   ++ K
Sbjct: 272 KKPKLSSVTAPTNKKQASVKPEPKAEDDDDDHLPISQRIKKSPTSESK 319



 Score = 26.6 bits (57), Expect(2) = 8e-06
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -2

Query: 37  YSQSSKVPPSSG 2
           YS+SSKVPPSSG
Sbjct: 350 YSKSSKVPPSSG 361