BLASTX nr result
ID: Rehmannia23_contig00032407
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00032407
(553 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 103 4e-20
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera] 96 8e-18
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 95 1e-17
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 89 7e-16
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera] 86 6e-15
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 72 1e-10
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 71 2e-10
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 71 2e-10
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera] 71 2e-10
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 71 2e-10
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 71 2e-10
ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488... 71 2e-10
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 70 3e-10
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 70 3e-10
emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera] 70 3e-10
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 70 3e-10
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 70 4e-10
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 70 4e-10
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 69 6e-10
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 69 6e-10
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 103 bits (256), Expect = 4e-20
Identities = 72/196 (36%), Positives = 84/196 (42%), Gaps = 13/196 (6%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFP------FPQLFVSATX 164
KL FRS++C+F+GYSS HKGY+CLH SGRVY++ V F+E FP F + S +
Sbjct: 163 KLSFRSNRCVFIGYSSSHKGYQCLHSSGRVYVSNHVIFDEQSFPYVSGSDFSSIAQSCSP 222
Query: 165 XXXXXXXXXXXXXXFVHHIPPQLS------PIPTPQHSPISSINXXXXXXXXXXXXXXXX 326
P Q S P TPQ SS +
Sbjct: 223 LDISSESKVTLVPIPQVQSPLQESPASDYLPADTPQVFSPSSTSSSSSTSTSHTHPIHHT 282
Query: 327 XXXXXXXXXXXXXXXXMITRSKNGIHKPKAF-TIXXXXXXXXXXXCQALSDPGWRAAMDL 503
MITRSK GI KPK+F ALSDP W AM
Sbjct: 283 QSPPHILPAAPPIGHPMITRSKAGIFKPKSFLAALLAIPSEPTSVSAALSDPKWFKAMQE 342
Query: 504 EFQALIKNHTWDLVPP 551
EFQAL NHTWDLV P
Sbjct: 343 EFQALQNNHTWDLVLP 358
>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
Length = 1211
Score = 95.5 bits (236), Expect = 8e-18
Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQLFVSATXXXXXXX 182
KLQ+ S +C FLGYS +HKGY C+ +GRVYI+R V FNE FP+ + +++
Sbjct: 584 KLQYXSEECTFLGYSLKHKGYXCMSSNGRVYISRDVIFNETSFPYSKTIQASS------- 636
Query: 183 XXXXXXXXFVHHIPPQLSP-------IPTPQHSPISS----------INXXXXXXXXXXX 311
F H+ P SP +PTP SPISS ++
Sbjct: 637 CLPSTVSPFTSHLSPSASPPILSPTMLPTPT-SPISSARXISEMDNVVSTHPHAPNSXDT 695
Query: 312 XXXXXXXXXXXXXXXXXXXXXMITRSKNGIHKPKAFTIXXXXXXXXXXXCQALSDPGWRA 491
MITR+K+GI KPK F + AL W+
Sbjct: 696 TPAPAHNVTRRIAKDVDNTHPMITRTKSGIFKPKFFIV---AVREPSSVATALQQDEWKK 752
Query: 492 AMDLEFQALIKNHTWDLVP 548
AM +E+ AL +N+TW LVP
Sbjct: 753 AMVVEYDALQRNNTWSLVP 771
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 94.7 bits (234), Expect = 1e-17
Identities = 68/184 (36%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQLFVSATXXXXXXX 182
KLQFRS C FLGYS HKGYKCL P+G + I+R V F+E FPF QL
Sbjct: 746 KLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQL--------QSQK 797
Query: 183 XXXXXXXXFVHHIPPQLS-PIPTPQHSPISSINXXXXXXXXXXXXXXXXXXXXXXXXXXX 359
+P Q S P+ S S +
Sbjct: 798 QXTSSFSSSXTSLPCQTSLPLMVLPSSTSCSTSSPTNPSIFPATSNHNVASQXPPSSAPP 857
Query: 360 XXXXXMITRSKNGIHKPKAFTIXXXXXXXXXXXCQALSDPGWRAAMDLEFQALIKNHTWD 539
MITRSK GI KPKA+ I +AL W+ AM E+ AL++N+TWD
Sbjct: 858 FPSHHMITRSKXGIFKPKAYLISTTPTSVP----EALQLSHWKQAMTDEYLALLRNNTWD 913
Query: 540 LVPP 551
LVPP
Sbjct: 914 LVPP 917
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 89.0 bits (219), Expect = 7e-16
Identities = 64/190 (33%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHP-SGRVYIARTVAFNEHEFPFPQL------FVSAT 161
KL +RSS+C+FLGYSS HKGY CL+P +GR+Y+ R V F+E FPF V+
Sbjct: 569 KLSYRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPFQSTPDQSSSVVTIP 628
Query: 162 XXXXXXXXXXXXXXXFVHHIPPQLSPIPTPQHSPISSINXXXXXXXXXXXXXXXXXXXXX 341
H P SP T + P S+I+
Sbjct: 629 TPAFLPCSSPPVSSLRSHTTPSTSSPPLT--NMPSSTIS--------LPDLIQVPFADIS 678
Query: 342 XXXXXXXXXXXMITRSKNGIHKPKAFTIXXXXXXXXXXXCQALSDPGWRAAMDLEFQALI 521
M+TR+KNGI K K + QA+ D W AM+ EF AL
Sbjct: 679 TSEPHPTNQHPMVTRAKNGISKKKVY--FSSHISEPTTFTQAVKDSNWVLAMEKEFSALQ 736
Query: 522 KNHTWDLVPP 551
+N+TW LVPP
Sbjct: 737 RNNTWHLVPP 746
>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
Length = 731
Score = 85.9 bits (211), Expect = 6e-15
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQL 146
KLQFRSSKC+FLGYSS HKGY CLHP G++YI+R V FNEHEFP+ +L
Sbjct: 110 KLQFRSSKCLFLGYSSTHKGYLCLHPFGKIYISRNVIFNEHEFPYSEL 157
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 71.6 bits (174), Expect = 1e-10
Identities = 32/49 (65%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQL 146
KLQFRS++C+FLGYS+ HKG+KCL S GR+YI+R V F+EH FPF L
Sbjct: 697 KLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASL 745
Score = 56.6 bits (135), Expect = 4e-06
Identities = 31/64 (48%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Frame = +3
Query: 381 TRSKNGIHKPKAFTIXXXXXXXXXXXC-------QALSDPGWRAAMDLEFQALIKNHTWD 539
TR ++GI KPK FT +AL+DP WRAAM+ EFQAL KN+TW
Sbjct: 896 TRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWT 955
Query: 540 LVPP 551
LVPP
Sbjct: 956 LVPP 959
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 71.2 bits (173), Expect = 2e-10
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHP-SGRVYIARTVAFNEHEFPFPQLFVSATXXXXXX 179
KLQ RS +C+FLGYS H+GY+C P SGRVY++R V F+E FPF + +++
Sbjct: 641 KLQLRSKRCVFLGYSLNHQGYRCFDPSSGRVYLSRHVLFDESSFPFTEPALTSNSSIDSS 700
Query: 180 XXXXXXXXXFVHHIPPQLSPIPTPQHSPISS 272
+ P LSP P+P SP S
Sbjct: 701 TDQSILIFGPLSGPSPSLSPSPSPSPSPCIS 731
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 71.2 bits (173), Expect = 2e-10
Identities = 41/92 (44%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQLFVSATXXXXXXX 182
KLQ+RS +C FLGYS +HKGYKC+ +GRVYI+ V FNE FP+ + ++
Sbjct: 763 KLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPYSKTIQVSSCLLSTVS 822
Query: 183 XXXXXXXXFVHHIPPQLSP--IPTPQHSPISS 272
PP LSP +PTP SPISS
Sbjct: 823 PSTSHLSPSAS--PPVLSPTMLPTPT-SPISS 851
>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
Length = 1099
Score = 71.2 bits (173), Expect = 2e-10
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQL 146
K FRS+KC+FLGYS HKGY+CL SG++Y+A+++ FNE++FP+ L
Sbjct: 488 KFSFRSTKCLFLGYSPXHKGYRCLSXSGQIYVAKSITFNENDFPYSTL 535
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 71.2 bits (173), Expect = 2e-10
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQLFVSA 158
KLQFRS +C FLGYS+ HKG+KCL PS GRVYI+R V F+E FPF +L +A
Sbjct: 697 KLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPFAKLHTNA 749
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 70.9 bits (172), Expect = 2e-10
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQLF 149
KL +RS +CIFLGYS+ HKGYKCL P+G +YI++ V F E +FP+ LF
Sbjct: 808 KLDYRSQECIFLGYSTAHKGYKCLAPNGHIYISKDVLFQESKFPYSTLF 856
>ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]
Length = 752
Score = 70.9 bits (172), Expect = 2e-10
Identities = 27/45 (60%), Positives = 38/45 (84%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPF 137
KLQF +++C+FLGYS+ HKGYKCL+ GR++++R V FNE+ FPF
Sbjct: 621 KLQFHTTRCVFLGYSNSHKGYKCLNSHGRIFVSRHVVFNENHFPF 665
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 70.5 bits (171), Expect = 3e-10
Identities = 33/49 (67%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQL 146
KLQFRS+ C FLGYS+ HKG+KCL PS GRVYI+R V F+E +FPF +L
Sbjct: 695 KLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKL 743
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 70.1 bits (170), Expect = 3e-10
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPF 137
KL FRSS C FLGYSS+HKGYKCL+ GR++I+R+V F+E FPF
Sbjct: 558 KLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVVFDETRFPF 602
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = +3
Query: 375 MITRSKNGIHKPKAFTIXXXXXXXXXXXCQALSDPGWRAAMDLEFQALIKNHTWDLV 545
M+TRSKNGI KP +T+ +A+S P W+ AMD EF+AL+KN TW LV
Sbjct: 724 MVTRSKNGIFKPXVYTVDLNVEEPNTFQ-EAISHPKWKEAMDEEFRALMKNKTWSLV 779
>emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera]
Length = 722
Score = 70.1 bits (170), Expect = 3e-10
Identities = 35/90 (38%), Positives = 48/90 (53%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPFPQLFVSATXXXXXXX 182
K F+S+KC+FLGYS H GY+C S R+Y+A+ V FNE++FP+ LF
Sbjct: 514 KFSFKSTKCLFLGYSPAHNGYRCFSSSNRIYVAKLVTFNENDFPYSTLFTQPNTPYQSFI 573
Query: 183 XXXXXXXXFVHHIPPQLSPIPTPQHSPISS 272
+ + PP +SP T H P SS
Sbjct: 574 HKFNCSSYVLPYCPP-VSPSST--HLPTSS 600
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 70.1 bits (170), Expect = 3e-10
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPSGRVYIARTVAFNEHEFPF 137
KL FRSS C FLGYSS+HKGYKCL+ GR++I+R+V F+E +FPF
Sbjct: 804 KLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVXFDETKFPF 848
Score = 56.6 bits (135), Expect = 4e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +3
Query: 375 MITRSKNGIHKPKAFTIXXXXXXXXXXXCQALSDPGWRAAMDLEFQALIKNHTWDLV 545
M+TRSKNGI KPK +T +A+S P W+ AMD EF+AL+KN TW V
Sbjct: 970 MVTRSKNGIFKPKVYTFDLNVEEPNTFQ-EAISHPKWKEAMDEEFRALMKNKTWSFV 1025
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 69.7 bits (169), Expect = 4e-10
Identities = 31/53 (58%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQLFVSA 158
KLQFRS +C+FLG+S+ HKG+KCL S GR+YI+R V F+E+ FPF +L +A
Sbjct: 691 KLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFTELHANA 743
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 69.7 bits (169), Expect = 4e-10
Identities = 31/53 (58%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQLFVSA 158
KLQFRS +C+FLG+S+ HKG+KCL S GR+YI+R V F+E+ FPF +L +A
Sbjct: 724 KLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFTELHANA 776
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 69.3 bits (168), Expect = 6e-10
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQLFVSA 158
KLQFRS +C+FLGYSS HKG+KCL S GRVY++R V F+E+ FPF L +A
Sbjct: 544 KLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASLHSNA 596
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 69.3 bits (168), Expect = 6e-10
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KLQFRSSKCIFLGYSSQHKGYKCLHPS-GRVYIARTVAFNEHEFPFPQLFVSA 158
KLQFRS +C+FLGYSS HKG+KCL S GRVY++R V F+E+ FPF L +A
Sbjct: 544 KLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASLHSNA 596