BLASTX nr result
ID: Rehmannia23_contig00031398
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00031398
(369 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 100 6e-35
emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera] 107 1e-31
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 103 2e-31
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 99 3e-30
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 96 4e-30
ref|XP_006584318.1| PREDICTED: uncharacterized protein LOC102666... 98 7e-30
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera] 107 3e-29
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 96 4e-29
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 96 4e-29
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 100 4e-29
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 96 6e-29
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 95 7e-29
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 94 1e-28
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 103 2e-28
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 96 5e-28
gb|AAB82754.1| retrofit [Oryza longistaminata] 89 6e-28
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 88 8e-28
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 89 1e-27
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 91 1e-27
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 89 1e-27
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 100 bits (248), Expect(2) = 6e-35
Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 316
Y + PDY L+ FGCAC+PYLRP+N+ KL FRS +C F+GYS +HKGY+CL SGR
Sbjct: 132 YQKLFQQVPDYVSLRVFGCACFPYLRPYNRHKLSFRSNRCVFIGYSSSHKGYQCLHSSGR 191
Query: 317 IYVTRTVSFNEMEFPY 364
+YV+ V F+E FPY
Sbjct: 192 VYVSNHVIFDEQSFPY 207
Score = 73.2 bits (178), Expect(2) = 6e-35
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVLPQ 167
ERKH+HIV++GL+ LA +NLP FW +AF VF INRLPTPTLNNI P L Q
Sbjct: 83 ERKHRHIVDIGLTLLAQANLPLKFWWNAFHTAVFLINRLPTPTLNNISPYQKLFQ 137
>emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera]
Length = 722
Score = 107 bits (267), Expect(2) = 1e-31
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = +2
Query: 128 YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLS 304
+ + + +GS PDY F K FGC+CYPYLR +N K F+STKC FLGYS AH GYRC S
Sbjct: 479 FQSPFETLFGSKPDYSFFKVFGCSCYPYLRSYNSHKFSFKSTKCLFLGYSPAHNGYRCFS 538
Query: 305 PSGRIYVTRTVSFNEMEFPY 364
S RIYV + V+FNE +FPY
Sbjct: 539 SSNRIYVAKLVTFNENDFPY 558
Score = 54.7 bits (130), Expect(2) = 1e-31
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNN 140
ERKH+HI+++ L+FLA + +P +FW DA V VF IN+LPT L N
Sbjct: 433 ERKHRHIIDLSLTFLAQAVMPLTFWLDACVSFVFIINQLPTKVLAN 478
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 103 bits (257), Expect(2) = 2e-31
Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +2
Query: 128 YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLS 304
Y Y + P YH LK FGCAC+PYLRP+N SKLQ RS +C FLGYSL H+GYRC
Sbjct: 606 YASPYEQLFHRVPQYHSLKVFGCACFPYLRPYNSSKLQLRSKRCVFLGYSLNHQGYRCFD 665
Query: 305 P-SGRIYVTRTVSFNEMEFPY 364
P SGR+Y++R V F+E FP+
Sbjct: 666 PSSGRVYLSRHVLFDESSFPF 686
Score = 58.2 bits (139), Expect(2) = 2e-31
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV+ GL+ LAH+++P ++W D+F V+ INRLP+ LN P
Sbjct: 561 ERKHRHIVDTGLTLLAHAHMPSTYWVDSFNTAVYIINRLPSRVLNYASP 609
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 98.6 bits (244), Expect(2) = 3e-30
Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
Frame = +2
Query: 155 GSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVT 328
G PDY+ L+ FGCAC+P LRP+N+ KLQFRST C FLGYS HKG++CL PS GR+Y++
Sbjct: 669 GHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYIS 728
Query: 329 RTVSFNEMEFPY 364
R V F+E +FP+
Sbjct: 729 RDVVFDETQFPF 740
Score = 58.9 bits (141), Expect(2) = 3e-30
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV VGL+ LA+S++P FW +AF+ V+ INR P+ L+++ P
Sbjct: 615 ERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSP 663
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 96.3 bits (238), Expect(2) = 4e-30
Identities = 44/68 (64%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = +2
Query: 164 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVTRTVS 340
P Y LK FGC CYP LRPFN KLQFRS C FLGYSL HKGY+CLSP+G I ++R V
Sbjct: 723 PSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVI 782
Query: 341 FNEMEFPY 364
F+E FP+
Sbjct: 783 FDEXAFPF 790
Score = 60.8 bits (146), Expect(2) = 4e-30
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVL 161
ERKH+HIV G++ LA ++LP+ +W +AF V+ INRLPTP L N P VL
Sbjct: 666 ERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVL 718
>ref|XP_006584318.1| PREDICTED: uncharacterized protein LOC102666325 [Glycine max]
Length = 651
Score = 97.8 bits (242), Expect(2) = 7e-30
Identities = 41/73 (56%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = +2
Query: 152 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL-SPSGRIYV 325
+ + PDY+FL++FGCACYP L P+N K Q+RS +C F+GYS +H+GY+CL + SGRIY+
Sbjct: 556 FNNVPDYNFLRAFGCACYPLLTPYNNPKFQYRSKECIFMGYSTSHRGYKCLDNKSGRIYI 615
Query: 326 TRTVSFNEMEFPY 364
++ V FNE FPY
Sbjct: 616 SKDVLFNEKHFPY 628
Score = 58.5 bits (140), Expect(2) = 7e-30
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVL 161
ERKH+HIV +GLS L+HS+LPY +W AF V+ INRLP + N+ P VL
Sbjct: 504 ERKHRHIVEMGLSLLSHSSLPYHYWDHAFHTAVYIINRLPA-SHNHCIPLKVL 555
>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
Length = 1099
Score = 107 bits (268), Expect(2) = 3e-29
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Frame = +2
Query: 128 YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLS 304
+ + + +GS DY F K FGC+CY YLRP+N K FRSTKC FLGYS HKGYRCLS
Sbjct: 453 FQSPFKTLFGSKLDYSFFKVFGCSCYSYLRPYNSHKFSFRSTKCLFLGYSPXHKGYRCLS 512
Query: 305 PSGRIYVTRTVSFNEMEFPY 364
SG+IYV ++++FNE +FPY
Sbjct: 513 XSGQIYVAKSITFNENDFPY 532
Score = 46.2 bits (108), Expect(2) = 3e-29
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNN 140
E+KH HI+++ L+ LA +P +FW DA V VF IN+L T L N
Sbjct: 407 EQKHHHIIDLSLTLLAQDAMPLTFWWDACVSSVFIINQLLTKVLAN 452
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 95.9 bits (237), Expect(2) = 4e-29
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +2
Query: 152 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYV 325
+ PDY L+ FGCAC+P+LRP+N KLQFRS +C FLGYS HKG++CL PS GR+Y+
Sbjct: 670 FNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYI 729
Query: 326 TRTVSFNEMEFPY 364
+R V F+E FP+
Sbjct: 730 SRDVIFDETNFPF 742
Score = 57.8 bits (138), Expect(2) = 4e-29
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV VGL+ LA+S++P FW +AF V+ INR PT L + P
Sbjct: 617 ERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTP 665
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 95.5 bits (236), Expect(2) = 4e-29
Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL-SPSG 313
Y + + PDY FL+ FGC CYP++RP+N KLQ+RS KC FLGYSL HKGY CL + +G
Sbjct: 643 YFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTG 702
Query: 314 RIYVTRTVSFNEMEFPY 364
R+YV+ V F+E +FP+
Sbjct: 703 RVYVSPHVVFDETQFPF 719
Score = 58.2 bits (139), Expect(2) = 4e-29
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVL 161
ERKH+H+V GL+ LAH+ LP FW AF F INR+P+ L N P L
Sbjct: 594 ERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLQNASPYFAL 646
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 99.8 bits (247), Expect(2) = 4e-29
Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 316
Y PDY L+ FGC+C+P+LRP+N KL +RS +C FLGYS AHKGY+CL+P+G
Sbjct: 777 YFKLLNKQPDYSCLRVFGCSCFPFLRPYNSHKLDYRSQECIFLGYSTAHKGYKCLAPNGH 836
Query: 317 IYVTRTVSFNEMEFPY 364
IY+++ V F E +FPY
Sbjct: 837 IYISKDVLFQESKFPY 852
Score = 53.9 bits (128), Expect(2) = 4e-29
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNN 140
ERKH++ V GL+ LA S LP FW +FV + INRLP+ +LNN
Sbjct: 728 ERKHRYTVETGLALLAQSTLPLKFWDHSFVTAAYLINRLPSVSLNN 773
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 95.5 bits (236), Expect(2) = 6e-29
Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL-SPSG 313
Y + + PDY FL+ FGC CYP++RP+N KLQ+RS KC FLGYSL HKGY CL + +G
Sbjct: 693 YFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTG 752
Query: 314 RIYVTRTVSFNEMEFPY 364
R+YV+ V F+E +FP+
Sbjct: 753 RVYVSPHVVFDETQFPF 769
Score = 57.8 bits (138), Expect(2) = 6e-29
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVL 161
ERKH+H+V GL+ LAH+ LP FW AF F INR+P+ L N P L
Sbjct: 644 ERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLXNASPYFAL 696
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 94.7 bits (234), Expect(2) = 7e-29
Identities = 40/76 (52%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 316
Y + S P+Y LK FGC C+P+LRP+N+ KL FRS+ C FLGYS HKGY+CL+ GR
Sbjct: 773 YEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGR 832
Query: 317 IYVTRTVSFNEMEFPY 364
++++R+V F+E +FP+
Sbjct: 833 MFISRSVXFDETKFPF 848
Score = 58.2 bits (139), Expect(2) = 7e-29
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV +GL+ LA ++LP +W DAF VF INRLPT L P
Sbjct: 724 ERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKCP 772
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 94.0 bits (232), Expect(2) = 1e-28
Identities = 40/76 (52%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = +2
Query: 140 YLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGR 316
Y + S P+Y LK FGC C+P+LRP+N+ KL FRS+ C FLGYS HKGY+CL+ GR
Sbjct: 527 YEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGR 586
Query: 317 IYVTRTVSFNEMEFPY 364
++++R+V F+E FP+
Sbjct: 587 MFISRSVVFDETRFPF 602
Score = 58.5 bits (140), Expect(2) = 1e-28
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV +GL+ LA ++LP +W DAF VF INRLPT L P
Sbjct: 478 ERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCP 526
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 103 bits (256), Expect(2) = 2e-28
Identities = 44/72 (61%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPSGRIYVT 328
+ S PDY FLK FGC+C+P LRP+N KLQ+RS +C FLGYSL HKGY+C+S +GR+Y++
Sbjct: 736 FKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYIS 795
Query: 329 RTVSFNEMEFPY 364
V FNE FPY
Sbjct: 796 HDVIFNETSFPY 807
Score = 48.1 bits (113), Expect(2) = 2e-28
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFPSMVL 161
ERKH+ IV GL+ L ++LP FW ++F VV+ NRLPT L++ P VL
Sbjct: 683 ERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVL 735
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 95.5 bits (236), Expect(2) = 5e-28
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Frame = +2
Query: 155 GSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVT 328
G+ PDY L+ FGCAC+P LRP+NQ KLQFRST+C FLGYS HKG++CL S GRIY++
Sbjct: 671 GATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYIS 730
Query: 329 RTVSFNEMEFPY 364
R V F+E FP+
Sbjct: 731 RDVVFDEHVFPF 742
Score = 54.7 bits (130), Expect(2) = 5e-28
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV VGL+ LA S++P +W AF+ V+ INR P+ T+ + P
Sbjct: 617 ERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTP 665
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 89.4 bits (220), Expect(2) = 6e-28
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Frame = +2
Query: 152 YGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLS-PSGRIYV 325
+ PDY L+ FGCAC+P+LRP+N KLQFRS +C FLG+S HKG++CL SGR+Y+
Sbjct: 670 FNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYI 729
Query: 326 TRTVSFNEMEFPY 364
+R V F+E FP+
Sbjct: 730 SRDVVFDENVFPF 742
Score = 60.5 bits (145), Expect(2) = 6e-28
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV VGLS L+++++P FW +AFV + INR+P+ T+ N P
Sbjct: 617 ERKHRHIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTP 665
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 87.8 bits (216), Expect(2) = 8e-28
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Frame = +2
Query: 164 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVTRTV 337
PDY L+ FGCAC+P LRP+N KLQFRS +C FLG+S HKG++CL S GRIY++R V
Sbjct: 668 PDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDV 727
Query: 338 SFNEMEFPY 364
F+E FP+
Sbjct: 728 VFDENIFPF 736
Score = 61.6 bits (148), Expect(2) = 8e-28
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV +GLS L+H+++P FW +AF V + INR+P+ ++NI P
Sbjct: 611 ERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISP 659
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 88.6 bits (218), Expect(2) = 1e-27
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Frame = +2
Query: 164 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVTRTV 337
PDY L+ FGC C+P LRP+N KLQFRS +C FLGYS HKG++CL S GR+YV+R V
Sbjct: 521 PDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDV 580
Query: 338 SFNEMEFPY 364
+F+E FP+
Sbjct: 581 TFDENFFPF 589
Score = 60.5 bits (145), Expect(2) = 1e-27
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLN 137
ERKH+HIV VGLS LAH+++P FW +AF+ + INR PT LN
Sbjct: 464 ERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILN 508
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 90.9 bits (224), Expect(2) = 1e-27
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +2
Query: 128 YTQQYLSFYGSAPDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCL- 301
Y+ + PDY L++FGCAC+P LRP+N K+ FRS +C FLGYS HKG+RCL
Sbjct: 491 YSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRCLD 550
Query: 302 SPSGRIYVTRTVSFNEMEFPY 364
S +GRIY++R V F+E FP+
Sbjct: 551 SSTGRIYISRDVVFDESVFPF 571
Score = 58.2 bits (139), Expect(2) = 1e-27
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLNNIFP 149
ERKH+HIV VGLS LAH++LP FW +A+ V+ INR+PT L P
Sbjct: 446 ERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSP 494
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 88.6 bits (218), Expect(2) = 1e-27
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Frame = +2
Query: 164 PDYHFLKSFGCACYPYLRPFNQSKLQFRSTKC-FLGYSLAHKGYRCLSPS-GRIYVTRTV 337
PDY L+ FGC C+P LRP+N KLQFRS +C FLGYS HKG++CL S GR+YV+R V
Sbjct: 521 PDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDV 580
Query: 338 SFNEMEFPY 364
+F+E FP+
Sbjct: 581 TFDENFFPF 589
Score = 60.5 bits (145), Expect(2) = 1e-27
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3
Query: 3 ERKHQHIVNVGLSFLAHSNLPYSFW*DAFVVVVFRINRLPTPTLN 137
ERKH+HIV VGLS LAH+++P FW +AF+ + INR PT LN
Sbjct: 464 ERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILN 508