BLASTX nr result
ID: Rehmannia23_contig00030403
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00030403
(536 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 280 1e-73
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 279 3e-73
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 276 2e-72
dbj|BAA22288.1| polyprotein [Oryza australiensis] 252 4e-65
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 250 1e-64
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 250 1e-64
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 249 2e-64
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 249 2e-64
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 248 5e-64
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 248 5e-64
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 248 6e-64
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 248 6e-64
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 246 2e-63
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 245 4e-63
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 244 1e-62
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 242 3e-62
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 242 3e-62
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776... 241 6e-62
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 238 8e-61
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl... 235 5e-60
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 280 bits (716), Expect = 1e-73
Identities = 132/176 (75%), Positives = 156/176 (88%)
Frame = +3
Query: 3 KVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLN 182
KV+T+KARLVAKG+TQ+EG+DYEETFSPVAMLKSIRILLSIA ++YE+WQMDVKTAFLN
Sbjct: 864 KVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLN 923
Query: 183 GSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDE 362
G+L+E IYM+QP+GFI + QE +VCKL+KSI+GLKQASRSWNI+FD A+KSYGF+QN DE
Sbjct: 924 GNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDE 983
Query: 363 PCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
PCVYKKI ++ V FL+LYVDDILLIGND+ LT K WL QF MKDLGEA Y+LG
Sbjct: 984 PCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILG 1039
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 279 bits (714), Expect = 3e-73
Identities = 136/176 (77%), Positives = 153/176 (86%)
Frame = +3
Query: 3 KVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLN 182
K +TYKA LVAKG+TQ+EGIDYEETFSPVAMLKSIRILLSIAA+FDYE+WQMDVKTAFLN
Sbjct: 169 KXZTYKAXLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLN 228
Query: 183 GSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDE 362
GSLDE IYM Q +GFI GQEH +CKL +SI+GLKQASRSWN FDQ +K++GFDQ DE
Sbjct: 229 GSLDECIYMKQXEGFIXNGQEHLLCKLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDE 288
Query: 363 PCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
CVYKK KV FLVLYVDDILLIGN IGMLTS K WL+Q+FDMKDLGEA+++LG
Sbjct: 289 SCVYKKWNGKKVVFLVLYVDDILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILG 344
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 276 bits (707), Expect = 2e-72
Identities = 131/176 (74%), Positives = 155/176 (88%)
Frame = +3
Query: 3 KVETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLN 182
KVET+KARLVAKGFTQ+EG+DYE+TFSPV MLKSIRILLSI A++DYE+WQMDVKT FLN
Sbjct: 204 KVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLN 263
Query: 183 GSLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDE 362
G L+E IYM+QP+GF+ K QE +VCKL++SI+GLKQASRSWNI F++A+KSYGF+QN E
Sbjct: 264 GHLEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGE 323
Query: 363 PCVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
PCVYK+I +KV FLVLYVDDILLIGND+ L+ K WLA QF MKDLGEASY+LG
Sbjct: 324 PCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYILG 379
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 252 bits (643), Expect = 4e-65
Identities = 118/177 (66%), Positives = 145/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 855 VHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNG 914
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+L E +YM+QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ +K +GF +N +E
Sbjct: 915 NLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEA 974
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKK+ + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 975 CVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIR 1031
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 250 bits (639), Expect = 1e-64
Identities = 119/177 (67%), Positives = 146/177 (82%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G++Y+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFL+G
Sbjct: 409 VHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSG 468
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ +K+ GF +N +EP
Sbjct: 469 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEP 528
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 529 CVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIR 585
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 250 bits (639), Expect = 1e-64
Identities = 119/177 (67%), Positives = 146/177 (82%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G++Y+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFL+G
Sbjct: 364 VHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSG 423
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ +K+ GF +N +EP
Sbjct: 424 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEP 483
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 484 CVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIR 540
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 249 bits (637), Expect = 2e-64
Identities = 120/177 (67%), Positives = 144/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V Y ARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 804 VHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNG 863
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+ LKQASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 864 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEP 923
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 924 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIR 980
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 249 bits (637), Expect = 2e-64
Identities = 120/177 (67%), Positives = 144/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V Y ARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 717 VHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNG 776
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+ LKQASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 777 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEP 836
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 837 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIR 893
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 248 bits (634), Expect = 5e-64
Identities = 120/177 (67%), Positives = 144/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQM+VKTAFLNG
Sbjct: 785 VHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNG 844
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+ DE +YM QP GF+ +CKL+KSI+GLKQASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 845 NHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEP 904
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 905 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIR 961
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 248 bits (634), Expect = 5e-64
Identities = 120/177 (67%), Positives = 144/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQM+VKTAFLNG
Sbjct: 775 VHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNG 834
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+ DE +YM QP GF+ +CKL+KSI+GLKQASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 835 NHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEP 894
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 895 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIR 951
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 248 bits (633), Expect = 6e-64
Identities = 119/177 (67%), Positives = 143/177 (80%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETF PVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 778 VHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNG 837
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ VK+ GF +N + P
Sbjct: 838 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVP 897
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S L F MKDLGEA+Y+LG R
Sbjct: 898 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIR 954
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 248 bits (633), Expect = 6e-64
Identities = 119/177 (67%), Positives = 143/177 (80%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETF PVAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 720 VHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNG 779
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ VK+ GF +N + P
Sbjct: 780 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVP 839
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S L F MKDLGEA+Y+LG R
Sbjct: 840 CVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIR 896
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 246 bits (628), Expect = 2e-63
Identities = 118/177 (66%), Positives = 144/177 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSP AMLKSIRI+L+IAA+F+YE+WQMDVKT FLNG
Sbjct: 640 VHIYKARLVAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNYEIWQMDVKTTFLNG 699
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLKQASRSWNI+FD+ VK+ F +N +EP
Sbjct: 700 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALRFVKNEEEP 759
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L +F MKDLGEA+Y+LG R
Sbjct: 760 CVYKKISGSALVFLILYVDDILLIGNDILMLESVKTSLKNRFSMKDLGEAAYILGIR 816
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 245 bits (626), Expect = 4e-63
Identities = 114/177 (64%), Positives = 143/177 (80%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
++ YKA LVAKG+ Q GIDY+ET+SPVAMLKSIRILL+ AAH+DYE+WQMDVKTAFLNG
Sbjct: 502 IQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNG 561
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+L+E +YM QP+GF +VCKL +SI+GLKQASRSWN++F++A+K + F +N +EP
Sbjct: 562 NLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEP 621
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKK + V FLVLYVDDILL+GNDI +L S K WL F MKD+GEA+Y+LG R
Sbjct: 622 CVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIR 678
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 244 bits (622), Expect = 1e-62
Identities = 115/175 (65%), Positives = 141/175 (80%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V +KARLVAKGF Q +G+DY+ETFS VAMLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 851 VHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNG 910
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
L E +YM QP+GF+ +VCKL+KSI+GLKQASRSWNI+FD+ +K +GF +N +EP
Sbjct: 911 KLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEP 970
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
CVY K+ + + L+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG
Sbjct: 971 CVYMKVSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILG 1025
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 242 bits (618), Expect = 3e-62
Identities = 117/177 (66%), Positives = 143/177 (80%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPVAMLKSIRI+L+IAA+FDYE+WQMDVKTA LNG
Sbjct: 561 VHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDYEIWQMDVKTALLNG 620
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF+ ++CKL+KSI+GLK+ASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 621 NLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKKASRSWNIRFDKVVKALGFVKNEEEP 680
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVD+ILLIGNDI ML S K L F MKDLGE + +LG R
Sbjct: 681 CVYKKISGSALVFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDLGEPTCILGIR 737
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 242 bits (618), Expect = 3e-62
Identities = 118/177 (66%), Positives = 141/177 (79%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPVAMLK I I+L+IAA+FDYE+WQM VKTAFLNG
Sbjct: 726 VHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQMYVKTAFLNG 785
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+LDE +YM QP GF ++CKL +SI+GLKQASRSWNI+FD+ VK+ GF +N +EP
Sbjct: 786 NLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKALGFVRNEEEP 845
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
CVYKKI + + FL+LYVDDILLIGNDI ML S K L F MKDLGEA+Y+LG R
Sbjct: 846 CVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAAYILGIR 902
>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
italica]
Length = 1686
Score = 241 bits (616), Expect = 6e-62
Identities = 114/175 (65%), Positives = 142/175 (81%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
V YKARLVAKGF Q +G+DY+ETFSPV MLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG
Sbjct: 266 VHIYKARLVAKGFRQVQGVDYDETFSPVVMLKSIRIILAIAAYFDYEIWQMDVKTAFLNG 325
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
+L + +YM+QP+GF+ +VCKL++SI+GLKQASRSWNI+FD+ VK + F +N +E
Sbjct: 326 NLAKDVYMIQPEGFVDPKNAGKVCKLQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEES 385
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
CVYKK+ + V FL+LYVDDILLIGN+I ML S K L F M DLGEA+Y+LG
Sbjct: 386 CVYKKVSGSSVVFLILYVDDILLIGNNILMLESVKTSLKNSFSMMDLGEAAYILG 440
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 238 bits (606), Expect = 8e-61
Identities = 113/166 (68%), Positives = 137/166 (82%)
Frame = +3
Query: 39 GFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNGSLDERIYMMQP 218
GF Q +G+DY+ETFSPV MLKSIRI+L+IAA+FDYE+WQMDVKTAFLNG+LDE +YM QP
Sbjct: 475 GFRQIQGVDYDETFSPVTMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQP 534
Query: 219 DGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEPCVYKKIKDNKV 398
GF+ ++CKL+KSI+GLKQASRSWNI+FD+ VK+ GF +N +EPCVYKKI + +
Sbjct: 535 KGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKASGFVKNEEEPCVYKKINRSAL 594
Query: 399 TFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLGNR 536
FL+LYVDDILLIGNDI ML SAK L F MKDLGEA+Y+LG R
Sbjct: 595 GFLILYVDDILLIGNDIPMLKSAKTSLKNSFSMKDLGEATYILGIR 640
>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
Length = 1321
Score = 235 bits (599), Expect = 5e-60
Identities = 109/175 (62%), Positives = 138/175 (78%)
Frame = +3
Query: 6 VETYKARLVAKGFTQREGIDYEETFSPVAMLKSIRILLSIAAHFDYEVWQMDVKTAFLNG 185
+E YKARLVAKGFTQ+EGIDY+ETFSPV+ S+RI+L++ AHFD E+ QMDVKTAFLNG
Sbjct: 860 IERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNG 919
Query: 186 SLDERIYMMQPDGFIQKGQEHRVCKLKKSIFGLKQASRSWNIKFDQAVKSYGFDQNPDEP 365
L+E +YM QP+GF EH VCKL KSI+GLKQASR W +KF + S+GFD+NP +
Sbjct: 920 DLEEEVYMKQPEGFSSNSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENPMDQ 979
Query: 366 CVYKKIKDNKVTFLVLYVDDILLIGNDIGMLTSAKCWLAQQFDMKDLGEASYVLG 530
C+Y K+ +K+ FLVLYVDDILL ND G+L K +L++ FDMKD+G+ASYV+G
Sbjct: 980 CIYHKVSGSKICFLVLYVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIG 1034