BLASTX nr result
ID: Rehmannia23_contig00029283
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00029283
(460 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus pe... 99 5e-26
gb|ABA94593.2| retrotransposon protein, putative, unclassified [... 101 7e-26
gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo... 101 7e-26
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 92 7e-26
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe... 97 1e-25
gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus pe... 91 2e-25
gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [... 96 3e-25
ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314... 92 3e-25
ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764... 94 5e-25
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana] 94 6e-25
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 97 1e-24
ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839... 103 2e-24
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 84 2e-24
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 94 2e-24
gb|ABA97040.1| retrotransposon protein, putative, unclassified [... 99 4e-24
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 106 5e-24
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 106 5e-24
ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297... 91 5e-24
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 105 5e-24
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 103 1e-23
>gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
Length = 1275
Score = 98.6 bits (244), Expect(2) = 5e-26
Identities = 47/95 (49%), Positives = 65/95 (68%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W + D+ AV+ F +ML+ LNHT +TLIPK+K P +++ RPISLCNV+Y
Sbjct: 419 FYQKYWRIVGDDVVAAVRAFLQSNEMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLY 478
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
+I +K LA R+K + ISE+QSAFV G I+DN
Sbjct: 479 RIGAKTLANRMKFVMQSVISESQSAFVPGRLIIDN 513
Score = 44.7 bits (104), Expect(2) = 5e-26
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -2
Query: 444 SIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
S+ ++++S + ++ M Q L A +I+ A+FQM P+KAPG DG+ P F
Sbjct: 367 SMMEEILSALEPKVTADMQQVLIADFSYQEIKDAVFQMQPSKAPGPDGLPPLF 419
>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1469
Score = 101 bits (251), Expect(2) = 7e-26
Identities = 51/99 (51%), Positives = 65/99 (65%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + F+Q W TIKS++ AV NFF+ M + +N T I LIPKIK PT + YRPISLC
Sbjct: 864 FSAKFYQRNWGTIKSEVVKAVHNFFIIGVMPEGINDTAIVLIPKIKQPTQLKDYRPISLC 923
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
NV+YK++SK L RL+ L +S NQSAFV I DN
Sbjct: 924 NVIYKVVSKCLVNRLRPFLDELVSPNQSAFVPERLITDN 962
Score = 41.6 bits (96), Expect(2) = 7e-26
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -2
Query: 450 NPSIQQDLISGI-PSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+PS+ ++S S +S MN+ L + + + +I A+FQ+ P KAPG DG + F
Sbjct: 813 DPSLDHSIVSSFFQSKVSAQMNEALCSDLTEEEISTAIFQIGPLKAPGPDGFSAKF 868
>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
Length = 1102
Score = 101 bits (251), Expect(2) = 7e-26
Identities = 51/99 (51%), Positives = 65/99 (65%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + F+Q W TIKS++ AV NFF+ M + +N T I LIPKIK PT + YRPISLC
Sbjct: 871 FSAKFYQRNWGTIKSEVVKAVHNFFIIGVMPEGINDTAIVLIPKIKQPTQLKDYRPISLC 930
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
NV+YK++SK L RL+ L +S NQSAFV I DN
Sbjct: 931 NVIYKVVSKCLVNRLRPFLDELVSPNQSAFVPERLITDN 969
Score = 41.6 bits (96), Expect(2) = 7e-26
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -2
Query: 450 NPSIQQDLISGI-PSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+PS+ ++S S +S MN+ L + + + +I A+FQ+ P KAPG DG + F
Sbjct: 820 DPSLDHSIVSSFFQSKVSAQMNEALCSDLTEEEISTAIFQIGPLKAPGPDGFSAKF 875
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 92.4 bits (228), Expect(2) = 7e-26
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Frame = -1
Query: 301 YESPFFQSCWNTIK---SDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPI 131
+ + FFQ W+ + SDLC V N + L +NHTLI LIPK++NP + +RPI
Sbjct: 80 FSARFFQEYWSVVGDDVSDLCLRVLN---EGAELTGINHTLIALIPKVENPQQVPDFRPI 136
Query: 130 SLCNVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
SLCNV+YK+ISK + RLKG L IS+ QSAF G I DNV
Sbjct: 137 SLCNVIYKLISKAIVNRLKGVLPDVISQFQSAFGPGRCIHDNV 179
Score = 50.4 bits (119), Expect(2) = 7e-26
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2
Query: 429 LISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
++ IP IS++MN L P E+G+I++AL QM P+KAPG DG + F
Sbjct: 37 VLDAIPQKISDAMNNRLCQPYERGEIEQALKQMAPDKAPGEDGFSARF 84
>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
Length = 1755
Score = 97.4 bits (241), Expect(2) = 1e-25
Identities = 47/95 (49%), Positives = 64/95 (67%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W + D+ AV+ F +ML+ LNHT +TLIPK+K P +++ RPISLCNV+Y
Sbjct: 873 FYQKYWRIVGDDVVAAVRAFLQSNEMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLY 932
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
+I +K LA R+K + ISE+QSAFV G I DN
Sbjct: 933 RIGAKTLANRMKFVMQSVISESQSAFVPGRLITDN 967
Score = 44.7 bits (104), Expect(2) = 1e-25
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -2
Query: 444 SIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
S+ ++++S + ++ M Q L A +I+ A+FQM P+KAPG DG+ P F
Sbjct: 821 SMMEEILSALEPKVTADMQQVLIADFSYQEIKDAVFQMQPSKAPGPDGLPPLF 873
>gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
Length = 1496
Score = 90.9 bits (224), Expect(2) = 2e-25
Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = -1
Query: 295 SPFF-QSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCN 119
SPFF Q W + D+ AV +FF K+LK +N T + LIPK+ P ++ RPISLCN
Sbjct: 815 SPFFYQKYWPIVGEDVVAAVLHFFKTGKLLKRINFTHVALIPKVHEPKNMMQLRPISLCN 874
Query: 118 VVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
V+YKI +K+L RLK L IS+ QSAFV G I DN
Sbjct: 875 VLYKIGAKVLTTRLKAILPTLISDTQSAFVPGRAISDN 912
Score = 50.4 bits (119), Expect(2) = 2e-25
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = -2
Query: 459 STDNPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
S+ S +++ G+ ++E MNQ L A +I+ ALFQM+P+KAPG DG +P F
Sbjct: 761 SSTGSSEYTEVVDGVRGRVTEEMNQALLAVFTPEEIKIALFQMHPSKAPGPDGFSPFF 818
>gb|EMJ26294.1| hypothetical protein PRUPE_ppa016563mg, partial [Prunus persica]
Length = 925
Score = 96.3 bits (238), Expect(2) = 3e-25
Identities = 46/95 (48%), Positives = 63/95 (66%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W + D+ A++ F ML+ LNHT +TLIPK+K P +++ RPISLCNV+Y
Sbjct: 54 FYQKYWRIVGDDVVAAIRAFLQSNDMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLY 113
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
+I +K LA R+K + ISE+QSAFV G I DN
Sbjct: 114 RIGAKTLANRMKFVMQSVISESQSAFVPGRLITDN 148
Score = 44.7 bits (104), Expect(2) = 3e-25
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -2
Query: 444 SIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
S+ ++++S + ++ M Q L A +I+ A+FQM P+KAPG DG+ P F
Sbjct: 2 SMMEEILSALEPKVTADMQQVLIADFSYQEIKDAVFQMQPSKAPGPDGLPPLF 54
>ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314838 [Fragaria vesca
subsp. vesca]
Length = 1524
Score = 92.4 bits (228), Expect(2) = 3e-25
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W + D+ AV+ F ++++ +NHT +TLIPK+K P + RPISLCNV+Y
Sbjct: 945 FYQQFWEIVGVDVVMAVREFLNSEELIREINHTWVTLIPKVKTPEYVHQLRPISLCNVIY 1004
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
K+ SK+LA R+K L IS++Q FV G I DN
Sbjct: 1005 KLGSKVLANRIKPLLDDIISQHQGTFVPGRLISDN 1039
Score = 48.1 bits (113), Expect(2) = 3e-25
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = -2
Query: 459 STDNPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMN 295
+T P +Q+D + + + +SE M + L + K ++ KAL QM+P+KAPG DG +
Sbjct: 888 TTSRPRVQEDDLRFVSNVVSEDMTRSLNRDISKEEVVKALKQMHPSKAPGPDGFS 942
>ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764448 [Setaria italica]
Length = 1051
Score = 94.0 bits (232), Expect(2) = 5e-25
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
FFQ W + ++ AV +F +M +S+N T + LIPK+K+P + +RPISLCNV+Y
Sbjct: 726 FFQFHWEAVGQNVMDAVLHFLNGGRMPESVNSTTLVLIPKVKHPQEMKQFRPISLCNVIY 785
Query: 109 KIISKILAERLKGCLHVCISENQSAFV 29
KI SKILA RL+GCL ISE QSAFV
Sbjct: 786 KICSKILANRLRGCLDEIISEEQSAFV 812
Score = 46.2 bits (108), Expect(2) = 5e-25
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -2
Query: 429 LISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+I +P+ ++ MN+ LT P +++ ALF M PNKAPG DG+ F
Sbjct: 679 VIDCVPTRVTTEMNEFLTKPFTPEEVKAALFMMGPNKAPGPDGLTAGF 726
>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
Length = 1023
Score = 94.4 bits (233), Expect(2) = 6e-25
Identities = 53/96 (55%), Positives = 60/96 (62%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
FFQ W TIK D+ F V +F K LN T I LIPK + PT ++ RPISLCNV Y
Sbjct: 305 FFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNVGY 364
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
KIISKIL +RLK L ISE SAFV G I DN+
Sbjct: 365 KIISKILCQRLKKILPSLISETHSAFVEGRLISDNI 400
Score = 45.4 bits (106), Expect(2) = 6e-25
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -2
Query: 450 NPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
NP + +S + + I++ +N LT P + +++ ALF M+P KAPG DGM F
Sbjct: 251 NPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALF 305
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 97.1 bits (240), Expect(2) = 1e-24
Identities = 50/100 (50%), Positives = 65/100 (65%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + F+ W+ I +D+C V++FF M +N T I LIPKI +P +S YRPISLC
Sbjct: 813 FTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLC 872
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
YKIISKIL +RLK CL IS++Q+AFV G I DNV
Sbjct: 873 TASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNV 912
Score = 41.6 bits (96), Expect(2) = 1e-24
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 459 STDNPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHFSS 280
+T S +++ISGI ++E MN L V +++ A+F + ++APG DG F
Sbjct: 760 TTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYH 819
Query: 279 HV 274
H+
Sbjct: 820 HL 821
>ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839353 [Brachypodium
distachyon]
Length = 1236
Score = 103 bits (256), Expect(2) = 2e-24
Identities = 51/99 (51%), Positives = 68/99 (68%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + FFQ W T+K D+ AV+NFF+ M +N T+I LIPKIKNP + + PISLC
Sbjct: 64 FPARFFQRHWATVKKDIIRAVRNFFVTGAMPYGVNDTIIVLIPKIKNPMYLKDFCPISLC 123
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
NV+YK+++K LA RL+ L+V IS+ QSAFV G I DN
Sbjct: 124 NVIYKVVAKCLANRLRPLLNVLISDAQSAFVPGRMITDN 162
Score = 35.0 bits (79), Expect(2) = 2e-24
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -2
Query: 429 LISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
LI I + + MNQ L +I ALFQ+ P KAPG DG F
Sbjct: 21 LIDCITAKVDGHMNQDLCKEFTDKEISDALFQIGPLKAPGPDGFPARF 68
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 84.0 bits (206), Expect(2) = 2e-24
Identities = 46/96 (47%), Positives = 58/96 (60%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W+ DL V+NF + LN T I LIPK + P ++ +RPISLCNV Y
Sbjct: 402 FYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSY 461
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
K+ISK+L+ RLK L ISE QSAFV I DN+
Sbjct: 462 KVISKVLSSRLKRLLPELISETQSAFVAERLITDNI 497
Score = 54.3 bits (129), Expect(2) = 2e-24
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = -2
Query: 450 NPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHFSSH 277
NP + + +P I+E MN+ LT + ++++ALF +NP+KAPG DGM F H
Sbjct: 348 NPQVFDSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQH 405
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 93.6 bits (231), Expect(2) = 2e-24
Identities = 53/96 (55%), Positives = 61/96 (63%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
FFQ W IKSDL V +F + K LN T I LIPK + PT ++ RPISLCNV Y
Sbjct: 239 FFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGY 298
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
K+ISKIL +RLK L ISE QSAFV G I DN+
Sbjct: 299 KVISKILCQRLKTVLPNLISETQSAFVDGRLISDNI 334
Score = 44.3 bits (103), Expect(2) = 2e-24
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = -2
Query: 459 STDNPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+T NP + + + + I++ +N LTA + +++ ALF ++P KAPG DGM F
Sbjct: 182 TTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALF 239
>gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1913
Score = 99.4 bits (246), Expect(2) = 4e-24
Identities = 49/99 (49%), Positives = 65/99 (65%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + FFQ W+ IK D+ AVK+FF + M + +N T I LIPK+ P + +RPISLC
Sbjct: 1026 FPARFFQRNWDAIKKDVVSAVKSFFETSIMPEGVNDTAIVLIPKVDQPMELKDFRPISLC 1085
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
NV+YKI+SK L RL+ L +S+NQSAFV G I DN
Sbjct: 1086 NVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDN 1124
Score = 37.7 bits (86), Expect(2) = 4e-24
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 456 TDNPSIQQDLISGI-PSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
T +P I Q +S + +S MN L + +I ALFQ+ P KAPG+DG F
Sbjct: 973 TADPCIDQSRVSRLFQEKVSPEMNVDLCKDFTEQEIADALFQIGPIKAPGLDGFPARF 1030
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 106 bits (264), Expect(2) = 5e-24
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F++SCW + D+ VK FF + M +S+NHT I +IPKI NP ++S YRPI+LCNV+Y
Sbjct: 837 FYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLY 896
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
KIISK L ERLKG L +S++Q+AF+ G + DNV
Sbjct: 897 KIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNV 932
Score = 30.4 bits (67), Expect(2) = 5e-24
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 423 SGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+G ++E +N LT + +I A+ + +KAPG DG+ F
Sbjct: 792 AGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARF 837
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 106 bits (264), Expect(2) = 5e-24
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F++SCW + D+ VK FF + M +S+NHT I +IPKI NP ++S YRPI+LCNV+Y
Sbjct: 817 FYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLY 876
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
KIISK L ERLKG L +S++Q+AF+ G + DNV
Sbjct: 877 KIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNV 912
Score = 30.4 bits (67), Expect(2) = 5e-24
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 423 SGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+G ++E +N LT + +I A+ + +KAPG DG+ F
Sbjct: 772 AGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARF 817
>ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297422 [Fragaria vesca
subsp. vesca]
Length = 1096
Score = 90.5 bits (223), Expect(2) = 5e-24
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+Q W+ + D+ AVK+F + L+ +N T +TLIPK+K P ++ RPISLCNV+Y
Sbjct: 220 FYQQFWDVVGVDVVEAVKSFLYSEEFLRDINCTWVTLIPKVKKPENMQQLRPISLCNVIY 279
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDN 5
KI SK+LA LK L IS QSAFV G I DN
Sbjct: 280 KIGSKLLANSLKPLLDSIISPFQSAFVPGRLISDN 314
Score = 46.2 bits (108), Expect(2) = 5e-24
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = -2
Query: 426 ISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
+ G+P I+E +NQ L V ++ +AL Q++P+KAPG DG++P F
Sbjct: 174 LDGVPRVITEEVNQSLMREVTAEEVWRALKQIHPSKAPGPDGLSPMF 220
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 105 bits (262), Expect(2) = 5e-24
Identities = 51/100 (51%), Positives = 70/100 (70%)
Frame = -1
Query: 301 YESPFFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLC 122
+ + FFQS W+T+ ++ V+ FF+ + + +NHT + LIPKI P +S YRPI+LC
Sbjct: 427 FSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQKVSDYRPIALC 486
Query: 121 NVVYKIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
+V YKII+K+LA+RL+ LH CISENQSAFV I DNV
Sbjct: 487 SVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNV 526
Score = 31.2 bits (69), Expect(2) = 5e-24
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Frame = -2
Query: 411 STISESMNQCLTAPVEK--------GKIQKALFQMNPNKAPGIDGMNPHF 286
S ++E+++ C+T + +I++A ++P+KAPG DG + F
Sbjct: 382 SVVAEALSPCITTDMNNTLISLPTVAEIKQACLSIHPDKAPGRDGFSASF 431
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 103 bits (257), Expect(2) = 1e-23
Identities = 49/96 (51%), Positives = 69/96 (71%)
Frame = -1
Query: 289 FFQSCWNTIKSDLCFAVKNFFLKTKMLKSLNHTLITLIPKIKNPTSISHYRPISLCNVVY 110
F+++CW+ + D+ VK FF + M S+NHT I +IPKI NPT++S YRPI+LCNV+Y
Sbjct: 837 FYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLY 896
Query: 109 KIISKILAERLKGCLHVCISENQSAFVLGCQILDNV 2
K+ISK L RLK L+ +S++Q+AF+ G I DNV
Sbjct: 897 KVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNV 932
Score = 32.0 bits (71), Expect(2) = 1e-23
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 459 STDNPSIQQDLISGIPSTISESMNQCLTAPVEKGKIQKALFQMNPNKAPGIDGMNPHF 286
ST+ + + ST++ ++N LT +I A+ Q+ +KAPG DG+ F
Sbjct: 780 STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 837