BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00029044
         (703 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       343   4e-92
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   323   2e-86
ref|XP_004153206.1| PREDICTED: uncharacterized protein LOC101203...   319   6e-85
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     298   9e-79
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   295   9e-78
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   292   6e-77
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   292   8e-77
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   291   1e-76
ref|XP_004150929.1| PREDICTED: uncharacterized protein LOC101213...   287   3e-75
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   285   7e-75
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   283   5e-74
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   282   8e-74
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     282   8e-74
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     281   1e-73
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   276   6e-72
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         274   2e-71
emb|CBI20118.3| unnamed protein product [Vitis vinifera]              268   1e-69
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   267   2e-69
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   267   2e-69
emb|CAN69408.1| hypothetical protein VITISV_014748 [Vitis vinifera]   258   2e-66

>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  343 bits (879), Expect = 4e-92
 Identities = 163/233 (69%), Positives = 197/233 (84%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            LWHLRLGHINL+RI+RLV+ G LN ++  SLP CESCLEGKMTKRSFT KGLRAK  LEL
Sbjct: 444  LWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLEL 503

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VHSD+CGP++V+ARGGYEYFI+F DD+SRYG+VYL+  KSE+ EKFKE+++E E ++GK+
Sbjct: 504  VHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKT 563

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEY+ + F+ YL E GI SQLSAP TPQQNGVSERRNRTLLDMVRSM+ ++
Sbjct: 564  IKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYA 623

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
             L  SF GYA++TA+++LN V SK V +TP ELW GRK +LR+ RIWGCPAHV
Sbjct: 624  QLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHV 676


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  323 bits (829), Expect = 2e-86
 Identities = 154/217 (70%), Positives = 181/217 (83%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            LWHLRLGHINL RI  LV+DGPL+ +KVE+LP CESCLEGKMTKR F  KG RA  VLEL
Sbjct: 763  LWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLEL 822

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            +HSD+CGP+SVQARGG+EYF+TFTDDYSRYGY+YL+ RKSE  EKFK F++E E++ GK 
Sbjct: 823  IHSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKY 882

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSD GGEY+S +F T+LSE GI SQLSAPG PQQNGV+ERRNRTL++MVRSM+ +S
Sbjct: 883  IKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYS 942

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGR 51
             L  S  G+AI+TA Y+LN+V SK VPKTP ELW GR
Sbjct: 943  DLPISLWGHAIETAAYILNLVPSKSVPKTPTELWTGR 979


>ref|XP_004153206.1| PREDICTED: uncharacterized protein LOC101203928, partial [Cucumis
           sativus]
          Length = 486

 Score =  319 bits (817), Expect = 6e-85
 Identities = 156/221 (70%), Positives = 184/221 (83%)
 Frame = -3

Query: 665 RIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLELVHSDVCGPISVQ 486
           RI RLV+ G L+ ++  SLP CESCLEGKMTKRSFT KGLRAK  LELVHSD+CGP++V+
Sbjct: 254 RIGRLVKSGLLSPLEDNSLPPCESCLEGKMTKRSFTGKGLRAKGPLELVHSDLCGPMNVK 313

Query: 485 ARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKSIKILRSDRGGEY 306
           ARGGYEYFI+F DDYSRYG++YL+  KS +LEKFKE+++E E +LGK+IKILRSDRGGEY
Sbjct: 314 ARGGYEYFISFIDDYSRYGHIYLIHHKSNSLEKFKEYKAEVENELGKTIKILRSDRGGEY 373

Query: 305 LSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFSTLATSFCGYAIQ 126
           +   F+ YL ENGI SQLSAP TPQQNGVSERRNRTLLDMVRSM+ FS +  SF GYA++
Sbjct: 374 MDLRFQDYLIENGIKSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFSQMPDSFLGYALE 433

Query: 125 TAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
           TA Y+LN VLSK V +TP EL  GRK +LRH RIWGCPA+V
Sbjct: 434 TAAYILNNVLSKSVSETPYELEKGRKSSLRHFRIWGCPANV 474


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  298 bits (764), Expect = 9e-79
 Identities = 143/233 (61%), Positives = 175/233 (75%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R+++L +DG L+    ES   CESCL GKMTK  FT    RA  +L L
Sbjct: 439  IWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLAL 498

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGGY+YFITFTDD+SRYGY+YLM  KSE+ EKFKEF++E +  LGK+
Sbjct: 499  VHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKT 558

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEY+S +F  +L + GI+ QL+ PGTPQ NGVSERRNRTLLDMVRSM+  S
Sbjct: 559  IKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQS 618

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
             L  SF GYA++TA   LN V SK V KTP E+W G+ P+L  ++IWGC A+V
Sbjct: 619  DLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYV 671


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  295 bits (755), Expect = 9e-78
 Identities = 142/232 (61%), Positives = 171/232 (73%)
 Frame = -3

Query: 701 LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
           LWH RLGHIN   IQ+L  DG LN    ES   CESCL GKMTK  FT    RA  +L L
Sbjct: 83  LWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGL 142

Query: 521 VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
           +H+DVCGP+S  ARG Y+YFITFTDD+SRYGYVYLM  KS++ E FKEF++E + Q GKS
Sbjct: 143 IHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKS 202

Query: 341 IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
           IK LRSDRGGEYLS  F  +L E GI+SQL+ PGTPQ NGVSERRNRTLLDMVRSM+  +
Sbjct: 203 IKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHT 262

Query: 161 TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAH 6
            L + F GYA++T+ ++LN   SK V KTP E+W G+ PNL  ++IWGC ++
Sbjct: 263 DLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESY 314


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  292 bits (748), Expect = 6e-77
 Identities = 140/233 (60%), Positives = 173/233 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R++++ RDG L+    ES   CESCL GKMTK  FT +  RA ++L L
Sbjct: 415  IWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLAL 474

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YF TFTDD+SRYGYVYLM  KSE+ EKFKEF +E +  LGK+
Sbjct: 475  VHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKT 534

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS +F  +L E GI+ QL+ PGTPQ NGVSE RNRTLLDMVRSM+  +
Sbjct: 535  IKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQT 594

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
             L  SF GYA++T  + LN V SK V KTP E+W G++P+L  ++IWGC  +V
Sbjct: 595  NLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYV 647


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  292 bits (747), Expect = 8e-77
 Identities = 143/233 (61%), Positives = 168/233 (72%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            LWHLRLGHINL RI  LV+DGPL+ +KVE+LP CESCLEGKMT R F  KG RA  VLEL
Sbjct: 411  LWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLEL 470

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            +HSD+CGP+SVQARGG+EYF+TFT DYSRYGY+YL+ RKSE  EKFK F++E EK+ GK 
Sbjct: 471  IHSDLCGPMSVQARGGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFKAFKAETEKRHGKY 530

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSD GGEY+S +F T+LSE GI SQLSAP  P                        
Sbjct: 531  IKTLRSDHGGEYISREFITFLSEQGITSQLSAPDLP------------------------ 566

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
                SF G+ I+TA Y+LN+V SK V KTP ELW GRKP+L+H+R+WGCP HV
Sbjct: 567  ---ISFWGHVIETAAYILNLVPSKSVFKTPTELWTGRKPSLKHVRMWGCPTHV 616


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550379|gb|ABA93176.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 938

 Score =  291 bits (746), Expect = 1e-76
 Identities = 139/229 (60%), Positives = 174/229 (75%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R+++L RDG L+    ES   CESCL GKMTK  FT +  +A ++L L
Sbjct: 324  IWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGL 383

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YFITFT+D+SRYGYVYLM  KS++ EKFKEF++E +  LGK+
Sbjct: 384  VHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKT 443

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS +F  +L E GI+ QL+ PGTPQ NGVSERRNRTLLDMVRSM+  +
Sbjct: 444  IKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQT 503

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGC 15
             L  SF GY ++TA + LN V SK V KTP E+W G++P+L  ++IWGC
Sbjct: 504  DLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGC 552


>ref|XP_004150929.1| PREDICTED: uncharacterized protein LOC101213227 [Cucumis sativus]
          Length = 513

 Score =  287 bits (734), Expect = 3e-75
 Identities = 139/195 (71%), Positives = 164/195 (84%)
 Frame = -3

Query: 587 EGKMTKRSFTSKGLRAKQVLELVHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTR 408
           +GKMTKRSFT KGLRAK  LELVHSD+CGP++V+ARGGYEYFI+F DDYSRYG++YL+  
Sbjct: 253 KGKMTKRSFTGKGLRAKGPLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYGHIYLIHH 312

Query: 407 KSEALEKFKEFRSEAEKQLGKSIKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQ 228
           KS +LEKFKE+++E E +LGK+IKILRSDRGGEY+   FR YL ENGI SQLSAP TPQQ
Sbjct: 313 KSNSLEKFKEYKAEVENELGKTIKILRSDRGGEYMDLRFRDYLIENGIQSQLSAPSTPQQ 372

Query: 227 NGVSERRNRTLLDMVRSMLGFSTLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRK 48
           NGVSERRN+TLLDMVRSM+ FS ++ SF GYA++TA Y+L  V SK V +TP EL  GRK
Sbjct: 373 NGVSERRNQTLLDMVRSMMSFSQMSDSFWGYALETAAYILKNVPSKSVSETPYELEKGRK 432

Query: 47  PNLRHIRIWGCPAHV 3
            +LRH RIWGCPAHV
Sbjct: 433 GSLRHFRIWGCPAHV 447


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  285 bits (730), Expect = 7e-75
 Identities = 138/233 (59%), Positives = 173/233 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R+++L RDG L+ +  ES   CESCL GKMTK  FT +  R  ++L L
Sbjct: 915  IWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVL 974

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  AR G+ YFITFTDD+SRYGYVYLM  KSE+ EKFKEF++E +  L K+
Sbjct: 975  VHTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKT 1034

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSD GGEYLS +F  +L   GI+ QL+ PGTPQ NGVSERRNRTLL+MVRSM+  +
Sbjct: 1035 IKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQT 1094

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
             L  SF GYA++TA + LN V SK V KTP E+W G++P+L  ++IWGC  +V
Sbjct: 1095 NLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYV 1147


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  283 bits (723), Expect = 5e-74
 Identities = 138/233 (59%), Positives = 171/233 (73%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R+++L RDG L+    ES    ESCL GKMTK  FT +  RA ++L L
Sbjct: 491  IWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGL 550

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YFITFTDD+S+YGYVYLM  KSE+ EKFKEF++E +  LGK+
Sbjct: 551  VHTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKT 610

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS +F  +  E GI+ QL+ PGTPQ N VSERRNRTLLDMVRSM+  +
Sbjct: 611  IKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQT 670

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
             L  SF GYA++T  + LN V SK V KTP E+W G +P+L  ++IWG   +V
Sbjct: 671  NLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNRPSLSFLKIWGYEVYV 723


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  282 bits (721), Expect = 8e-74
 Identities = 136/229 (59%), Positives = 171/229 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH  LGHIN  RI++L RDG L+    ES   CESCL GKMTK  FT +  RA ++L L
Sbjct: 404  IWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGL 463

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YFITFTD++SRYGYVYLM  KSE+ EKF+EF++E +  LGK+
Sbjct: 464  VHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKT 523

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS ++  +L E GI+ QL+ PGTPQ N VSERRNR LLDMVRSM+  +
Sbjct: 524  IKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQT 583

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGC 15
             +  SF GYA++TA + LN V SK V KTP E+W G++P+L  ++IW C
Sbjct: 584  DMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC 632


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  282 bits (721), Expect = 8e-74
 Identities = 136/229 (59%), Positives = 171/229 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH  LGHIN  RI++L RDG L+    ES   CESCL GKMTK  FT +  RA ++L L
Sbjct: 317  IWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGL 376

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YFITFTD++SRYGYVYLM  KSE+ EKF+EF++E +  LGK+
Sbjct: 377  VHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKT 436

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS ++  +L E GI+ QL+ PGTPQ N VSERRNR LLDMVRSM+  +
Sbjct: 437  IKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQT 496

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGC 15
             +  SF GYA++TA + LN V SK V KTP E+W G++P+L  ++IW C
Sbjct: 497  DMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC 545


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  281 bits (720), Expect = 1e-73
 Identities = 137/228 (60%), Positives = 169/228 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHIN  R+++L RDG L+    ES    ESCL GKMTK  FT +  RA ++L L
Sbjct: 418  IWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGL 477

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            VH+DVCGP+S  ARGG+ YFITFTDD+S+YGYVYLM  KSE+ EKFKEF++E +  LGK+
Sbjct: 478  VHTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKT 537

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGEYLS +F  +  E GI+ QL+ PGTPQ N VSERRNRTLLDMVRSM+  +
Sbjct: 538  IKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQT 597

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWG 18
             L  SF GYA++T  + LN V SK V KTP E+W G +P+L  ++IWG
Sbjct: 598  NLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNRPSLSFLKIWG 645


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  276 bits (705), Expect = 6e-72
 Identities = 132/225 (58%), Positives = 167/225 (74%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
            +WH RLGHI+  R+++L  DG LN   +ES   CESC+ GKMTK  FT +  RA  +L L
Sbjct: 527  IWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLAL 586

Query: 521  VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
            +H+DVCGP+S  ARGG++YFITFTDDYSRYGY+YLM  KSE+ EKFKEF++E + QLGK+
Sbjct: 587  IHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKT 646

Query: 341  IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
            IK LRSDRGGE+LS +F  +L + GI+ QL+ P TPQ NGVSER NRTLLDMVR M+  S
Sbjct: 647  IKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQS 706

Query: 161  TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIR 27
             L   F GYA++TA + LN V SK V KTP E+W G+ P+L  ++
Sbjct: 707  DLPLYFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKSPSLSFLK 751


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  274 bits (700), Expect = 2e-71
 Identities = 135/233 (57%), Positives = 169/233 (72%)
 Frame = -3

Query: 701 LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLEL 522
           +WH RLGHIN  R+++L RDG L+    ES    E CL GKMTK  FT +  R+ ++L L
Sbjct: 233 IWHCRLGHINEKRMEKLHRDGLLHSFDFESFETYEFCLLGKMTKAPFTGQSERSSELLGL 292

Query: 521 VHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKS 342
           VH DVC P+S  ARGG+ YFITFTDD+SRY YVYLM  KSE+ EKFKEF++E +  LGK+
Sbjct: 293 VHIDVCEPMSSTARGGFGYFITFTDDFSRYVYVYLMRHKSESFEKFKEFQNEVQNHLGKT 352

Query: 341 IKILRSDRGGEYLSNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFS 162
           IK LRSDRGGEYLS +F  +L E GI+ QL+ PGTPQ N VSERRNRTLLDMV+SM+  +
Sbjct: 353 IKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDMVQSMMSQT 412

Query: 161 TLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
            L   F GYA++TA + LN V SK V KT  E+W G++P+L  ++IWGC  +V
Sbjct: 413 DLPLCFWGYALETAAFTLNRVPSKSVDKTSYEIWTGKRPSLSFLKIWGCEVYV 465


>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
          Length = 1354

 Score =  268 bits (685), Expect = 1e-69
 Identities = 131/241 (54%), Positives = 175/241 (72%), Gaps = 10/241 (4%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGL-RAKQVLE 525
            LWH RLGHI+  RI+RLV++G L ++      VC +C++GK TK   T KG  R+ ++LE
Sbjct: 806  LWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKH--TKKGATRSNELLE 863

Query: 524  LVHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGK 345
            ++H+D+CGP+S+    G +YFITF DD SRYGYVYLM  KS+A++ F+ F +E E+QL K
Sbjct: 864  IIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDK 923

Query: 344  SIKILRSDRGGEYLSN---------DFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLL 192
             IKI+RSD+GGEY             F  +L ++GI +Q + PGTPQQNGV+ERRNRTL+
Sbjct: 924  KIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLM 983

Query: 191  DMVRSMLGFSTLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCP 12
            +MVRSM+ +S++  S  G A++TA+Y+LN V SK VPKTP ELW GRKP+LRHI IWGCP
Sbjct: 984  EMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVPKTPFELWTGRKPSLRHIHIWGCP 1043

Query: 11   A 9
            A
Sbjct: 1044 A 1044


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  267 bits (683), Expect = 2e-69
 Identities = 129/220 (58%), Positives = 164/220 (74%)
 Frame = -3

Query: 662 IQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLELVHSDVCGPISVQA 483
           +++L RDG L+    ES   CESCL GK+TK  FT +  RA ++L LVH+DVCGP+S  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 482 RGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKSIKILRSDRGGEYL 303
           RGG+ YFI FTDD+SRYGYVYLM  KSE+ EKFKEF +E +  L K+IK LRSDRGGEY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 302 SNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFSTLATSFCGYAIQT 123
           S +F  +L E GI+ QL+ PGTPQ NGVS+RRNRTLLDMVRSM+  + L  SF GYA++T
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 122 AVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
           AV+ +N V SK + KTP E+W G++P+L  ++IWGC  +V
Sbjct: 181 AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYV 220


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  267 bits (683), Expect = 2e-69
 Identities = 129/220 (58%), Positives = 164/220 (74%)
 Frame = -3

Query: 662 IQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKGLRAKQVLELVHSDVCGPISVQA 483
           +++L RDG L+    ES   CESCL GK+TK  FT +  RA ++L LVH+DVCGP+S  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 482 RGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGKSIKILRSDRGGEYL 303
           RGG+ YFI FTDD+SRYGYVYLM  KSE+ EKFKEF +E +  L K+IK LRSDRGGEY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 302 SNDFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLLDMVRSMLGFSTLATSFCGYAIQT 123
           S +F  +L E GI+ QL+ PGTPQ NGVS+RRNRTLLDMVRSM+  + L  SF GYA++T
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 122 AVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCPAHV 3
           AV+ +N V SK + KTP E+W G++P+L  ++IWGC  +V
Sbjct: 181 AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYV 220


>emb|CAN69408.1| hypothetical protein VITISV_014748 [Vitis vinifera]
          Length = 1148

 Score =  258 bits (658), Expect = 2e-66
 Identities = 128/243 (52%), Positives = 167/243 (68%), Gaps = 10/243 (4%)
 Frame = -3

Query: 701  LWHLRLGHINLHRIQRLVRDGPLNDIKVESLPVCESCLEGKMTKRSFTSKG-LRAKQVLE 525
            LWH RLGHI+  RI+RLV+ G L ++      VC  C++GK TK   T KG +R  ++LE
Sbjct: 434  LWHRRLGHISRERIERLVKKGILQNLDFTDFHVCVDCIKGKQTKH--TKKGAIRTNELLE 491

Query: 524  LVHSDVCGPISVQARGGYEYFITFTDDYSRYGYVYLMTRKSEALEKFKEFRSEAEKQLGK 345
            ++H+D+CGP+SV    G +YFITF DD SRYGYVYLM  KS+A++ F+ F  E E+QL K
Sbjct: 492  IIHTDICGPLSVPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFIIEVERQLDK 551

Query: 344  SIKILRSDRGGEYLSN---------DFRTYLSENGILSQLSAPGTPQQNGVSERRNRTLL 192
             IKI+RSDRGGEY             F  +L + GI +Q +  GTPQQNG +ERRNRTL+
Sbjct: 552  KIKIMRSDRGGEYYGRYDESGQNPGPFAKFLEKRGIRAQYTMLGTPQQNGATERRNRTLM 611

Query: 191  DMVRSMLGFSTLATSFCGYAIQTAVYLLNMVLSKFVPKTPLELWNGRKPNLRHIRIWGCP 12
            +MVRSM+ + ++  S  G A++TA+Y+LN V SK +PKTP ELW  RKP+LRHI IWGCP
Sbjct: 612  EMVRSMISYFSVPISLWGEALKTAMYILNRVPSKAIPKTPFELWTSRKPSLRHIHIWGCP 671

Query: 11   AHV 3
              V
Sbjct: 672  TEV 674