BLASTX nr result
ID: Rehmannia23_contig00027046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00027046
(626 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 64 8e-15
gb|AAD22286.1| putative non-LTR retroelement reverse transcripta... 72 9e-13
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 69 9e-13
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 67 6e-12
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 64 6e-12
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 74 4e-11
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 64 1e-10
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 64 1e-10
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 62 2e-10
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 60 2e-10
ref|XP_004309646.1| PREDICTED: uncharacterized protein LOC101290... 54 1e-09
ref|XP_002465515.1| hypothetical protein SORBIDRAFT_01g040340 [S... 53 3e-09
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 50 4e-09
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 67 4e-09
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe... 54 7e-09
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 47 9e-09
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 50 9e-09
gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus pe... 53 9e-09
gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [... 64 1e-08
gb|EMJ15800.1| hypothetical protein PRUPE_ppa022684mg [Prunus pe... 65 1e-08
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 63.9 bits (154), Expect(2) = 8e-15
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Frame = -1
Query: 470 LTATPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNW 291
L + P+ L+ F F++ W ++ V++ +W G+ + + + +C L W
Sbjct: 834 LDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMW 893
Query: 290 SKSHHSN-SAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVN 114
SK SN S +++ + + + L + K + E++ Q+SRVN
Sbjct: 894 SKEKFSNPSVQVADLLSDIEKLHQSNPPDAH-HQINILTDQVTKLWTQDEMYWHQRSRVN 952
Query: 113 WFK*GDKNSKLFHAYTLQRRKMN 45
W K GD+NS FH T+QRR+ N
Sbjct: 953 WLKLGDQNSSFFHQTTIQRRQYN 975
Score = 42.4 bits (98), Expect(2) = 8e-15
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -3
Query: 591 RGFVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLLDCNP 457
R F+KE +DR G+ W P+ ++ H K SDH LLLD NP
Sbjct: 794 RVFIKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNP 838
>gb|AAD22286.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1311
Score = 72.0 bits (175), Expect(2) = 9e-13
Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Frame = -1
Query: 458 PQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSH 279
P+ K F +D+R D+V +V +WN + T + RI CR +++ WSK H
Sbjct: 546 PKTKKRKCIFRYDRRLKDNDEVKKLVLDSWNSNLSAT----VDHRIFACRSSIILWSKQH 601
Query: 278 HSNSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*G 99
H NS +E + E S+ T L AY+ ++ F Q+SR W G
Sbjct: 602 HLNSQVEIFTLREQLEDEISSNSSPQ-EEIDSINTRLLSAYQREKAFWKQRSRNLWLALG 660
Query: 98 DKNSKLFHAYTLQRRKMNG-----SLWDTPVTLEDEI 3
DKNS FHA T RR +N S PV EDEI
Sbjct: 661 DKNSGFFHAATKNRRAINNIAVIESSAGLPVYEEDEI 697
Score = 27.3 bits (59), Expect(2) = 9e-13
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 561 IFGSPDWLVQFPHARVQHCEKQASDHSLLLLDCNP 457
+ + DW++ +P R ++ + SDH L+ +P
Sbjct: 512 LMANSDWIMAYPSGRSEYLHFEGSDHRPLVTSFDP 546
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 69.3 bits (168), Expect(2) = 9e-13
Identities = 47/152 (30%), Positives = 74/152 (48%)
Frame = -1
Query: 500 NRRPTIPYCSLTATPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRI 321
+ RP + Y A P K S F FD+R ++++ +V+ W + L+ +I
Sbjct: 165 DHRPLVTYFG--APPLKRS--KPFRFDRRLREKEEIRALVKEVWELARQDSVLY----KI 216
Query: 320 GNCRVTLLNWSKSHHSNSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKEL 141
CR +++ W+K +SNSAK ++ ++ D S+ L+ AY+ +EL
Sbjct: 217 SRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDP-SLIGSITQELEAAYRQEEL 275
Query: 140 F*SQKSRVNWFK*GDKNSKLFHAYTLQRRKMN 45
F Q SRV W GD+N FHA T RR +N
Sbjct: 276 FWKQWSRVQWLNSGDRNKGYFHATTRTRRMLN 307
Score = 30.0 bits (66), Expect(2) = 9e-13
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 585 FVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLL 472
F+K +DR G+ W FP ++ ++ + SDH L+
Sbjct: 133 FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLV 170
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 66.6 bits (161), Expect(2) = 6e-12
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Frame = -1
Query: 437 ADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSK-SHHSNSAK 261
A F +DKRW+ R+ ++ + W++Q T ++K I +CR + W + S S++ +
Sbjct: 238 AGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEK-IASCRREISKWKRVSKPSSAVR 296
Query: 260 ISQ-QYK-EXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNS 87
I + Q+K + D + E L+ L + Y N+E F +KSR+ W + GD+N+
Sbjct: 297 IQELQFKLDAATKQIPFDRR----ELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNT 352
Query: 86 KLFHAYTLQRRKMN 45
K FHA T RR N
Sbjct: 353 KYFHAATKNRRAQN 366
Score = 30.0 bits (66), Expect(2) = 6e-12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 570 IDRIFGSPDWLVQFPHARVQHCEKQASDHSLLL 472
+DR + W+ FP A+ + +K SDHS L+
Sbjct: 194 LDRTVANQAWMELFPQAKATYLQKICSDHSPLI 226
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 64.3 bits (155), Expect(2) = 6e-12
Identities = 39/136 (28%), Positives = 67/136 (49%)
Frame = -1
Query: 452 KLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHS 273
++ + F FD R D V+ +++ W + L ++ + CR ++NW++ +
Sbjct: 131 RVKRRGQFRFDNRLRDNDVVNALIQETWTNAGDASVLTKMNQ----CRREIINWTRLQNL 186
Query: 272 NSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDK 93
NSA++ ++ ++ D N +L L+ AYK +E F Q+SRV W GD+
Sbjct: 187 NSAELIEKTQKALEEALTADPP-NPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDR 245
Query: 92 NSKLFHAYTLQRRKMN 45
N+ FHA T RR N
Sbjct: 246 NTGYFHAVTRNRRTQN 261
Score = 32.3 bits (72), Expect(2) = 6e-12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 585 FVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
FV++ +DR + WL FP R ++ + SDH L++
Sbjct: 87 FVRQRLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVV 125
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 73.6 bits (179), Expect = 4e-11
Identities = 46/132 (34%), Positives = 63/132 (47%)
Frame = -1
Query: 440 KADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAK 261
K +F FDKRW+G+D + + WN G Q +++ NCR + W KS +
Sbjct: 21 KQNFRFDKRWIGKDGLLEAISQGWNLDS-GFREGQFVEKLTNCRRAISKWRKSLIPFGRQ 79
Query: 260 ISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKL 81
+ K D + E L L +AY+++E + QKSR W K GD NSK
Sbjct: 80 TIEDLKAELDVAQRDDDRSR-EEITELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKF 138
Query: 80 FHAYTLQRRKMN 45
FHA T QRR N
Sbjct: 139 FHALTKQRRARN 150
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 63.9 bits (154), Expect(2) = 1e-10
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Frame = -1
Query: 446 SLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNS 267
S + F FDKR+L ++DV + W++ GT + + R+ CR +L +W K ++ NS
Sbjct: 198 SYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNS 256
Query: 266 A-KISQQY----KEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK* 102
KI+Q KE L+ L KAY+ +E + QKSR W +
Sbjct: 257 LDKINQLEAALEKEQSLVWPIFQ------RVSVLKKDLAKAYREEEAYWKQKSRQKWLRS 310
Query: 101 GDKNSKLFHAYTLQRRK 51
G++NSK FHA Q R+
Sbjct: 311 GNRNSKYFHAAVKQNRQ 327
Score = 28.5 bits (62), Expect(2) = 1e-10
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 597 GERG--FVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
G RG +++ +DR FG+ +W FP + + + SDH +L+
Sbjct: 146 GRRGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLI 190
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 63.9 bits (154), Expect(2) = 1e-10
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Frame = -1
Query: 446 SLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNS 267
S + F FDKR+L ++DV + W++ GT + + R+ CR +L +W K ++ NS
Sbjct: 201 SYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNS 259
Query: 266 A-KISQQY----KEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK* 102
KI+Q KE L+ L KAY+ +E + QKSR W +
Sbjct: 260 LDKINQLEAALEKEQSLVWPIFQ------RVSVLKKDLAKAYREEEAYWKQKSRQKWLRS 313
Query: 101 GDKNSKLFHAYTLQRRK 51
G++NSK FHA Q R+
Sbjct: 314 GNRNSKYFHAAVKQNRQ 330
Score = 28.5 bits (62), Expect(2) = 1e-10
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 597 GERG--FVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
G RG +++ +DR FG+ +W FP + + + SDH +L+
Sbjct: 149 GRRGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLI 193
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 61.6 bits (148), Expect(2) = 2e-10
Identities = 41/129 (31%), Positives = 55/129 (42%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAKISQ 252
F +D+ ++ ++ W P ++ R+ CR LLNWSK HH NS K
Sbjct: 219 FRYDRTLKDNPEISKLMNETWKSN----PSAKVDYRLHLCRAALLNWSKEHHLNSQKEIL 274
Query: 251 QYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLFHA 72
+ D L L AY+ +E F Q+SR W GDKNS FHA
Sbjct: 275 SLRVQLEEALTDDAATQ-DSVDLLNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHA 333
Query: 71 YTLQRRKMN 45
T RR +N
Sbjct: 334 ATNSRRAIN 342
Score = 30.0 bits (66), Expect(2) = 2e-10
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 570 IDRIFGSPDWLVQFPHARVQHCEKQASDHSLLL 472
+DR + DW++ +P R ++ + SDH L+
Sbjct: 173 LDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLV 205
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 60.1 bits (144), Expect(2) = 2e-10
Identities = 44/136 (32%), Positives = 60/136 (44%)
Frame = -1
Query: 461 TPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKS 282
T K + +F FDKR + +V + AWN L L K + +CR L W K
Sbjct: 232 TKTKEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDK-LKHCRSALSRWKKE 290
Query: 281 HHSNSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK* 102
++ NS+ Q + G SL+ L KA ++E+F SQKSR W
Sbjct: 291 NNINSSTRITQARAALELEQS-SGFPRADLVFSLKNDLCKANHDEEVFWSQKSRAKWMHS 349
Query: 101 GDKNSKLFHAYTLQRR 54
GDKN+ FHA R
Sbjct: 350 GDKNTSFFHASVKDNR 365
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 585 FVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
+++ +DR FG+ +W FP + + +K+ SDH +L+
Sbjct: 191 WIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLV 229
>ref|XP_004309646.1| PREDICTED: uncharacterized protein LOC101290829 [Fragaria vesca
subsp. vesca]
Length = 321
Score = 53.5 bits (127), Expect(2) = 1e-09
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Frame = -1
Query: 467 TATPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWS 288
T P + F FD W+ + ++E AW K + + + +G CR LL WS
Sbjct: 180 TTDPGWIKKIPTFKFDAAWVNDAETIPIIEEAWVKNPNMSNVSLWNENLGRCRSKLLGWS 239
Query: 287 KSHHSNSAK-ISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNW 111
+ + K + ++ + + E + L + L + +E + Q+S ++W
Sbjct: 240 RRKYPRCDKELIKECLFDLETLQCANPFDSMKEQERLSSKLGDLWIKEEQYWHQRSSIHW 299
Query: 110 FK*GDKNSKLFHAYTLQRRKMN 45
GD N++ FH TL RR+ N
Sbjct: 300 LTAGDSNTRFFHLSTLHRRQWN 321
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 582 VKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLLDCNP 457
++ECIDR DW++ +P++ H + SDH+ LL +P
Sbjct: 142 LQECIDRSLICHDWVLNWPNSCPTHLARIRSDHNPLLFTTDP 183
>ref|XP_002465515.1| hypothetical protein SORBIDRAFT_01g040340 [Sorghum bicolor]
gi|241919369|gb|EER92513.1| hypothetical protein
SORBIDRAFT_01g040340 [Sorghum bicolor]
Length = 778
Score = 52.8 bits (125), Expect(2) = 3e-09
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAKISQ 252
F F+ W + + AW + + LQ+++ +L W + N + +
Sbjct: 87 FKFEVMWEDHESFTPTLSEAWENEGSAASMQDLQRKLKGVSASLSGWERHTFGNVRRELK 146
Query: 251 QYK-EXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLFH 75
+ K E D G + +++ + +E+ Q+SRV W GDKNSK+FH
Sbjct: 147 KLKDELANMQLSPDRVGPSHAEIKVVEKINELHHREEIMWRQRSRVQWLAAGDKNSKIFH 206
Query: 74 AYTLQRRKMN 45
QRRK N
Sbjct: 207 LRASQRRKKN 216
Score = 34.7 bits (78), Expect(2) = 3e-09
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 570 IDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
+DR + DW +FP A VQH ASDH ++L
Sbjct: 39 LDRALVTGDWFARFPMAMVQHKSAAASDHGPIVL 72
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 50.4 bits (119), Expect(2) = 4e-09
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAW--NKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAKI 258
F FD R + +V+++W N+ TP+ + RI +CR + + + NS +
Sbjct: 621 FRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITE---RISSCRQAMARLKHASNLNSEQR 677
Query: 257 SQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLF 78
++ + + + L+ L KA+ ++E++ QKSR W K GD+N+ F
Sbjct: 678 IKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYF 737
Query: 77 HAYTLQRRKMN 45
HA T R N
Sbjct: 738 HACTKTRYSQN 748
Score = 36.6 bits (83), Expect(2) = 4e-09
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 582 VKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLLDCN 460
VK C+DR+F + W FP+A ++ + SDH +L+ N
Sbjct: 571 VKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFN 611
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 67.0 bits (162), Expect = 4e-09
Identities = 45/158 (28%), Positives = 79/158 (50%)
Frame = -1
Query: 518 VCNIVKNRRPTIPYCSLTATPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLF 339
+C + RP + + L+ K K F +D+R D+V +V+ AWN ++ T +
Sbjct: 52 LCFEGSDHRPLLTHFDLS----KKKKKGVFRYDRRLKNNDEVTALVQEAWN--LYDTDI- 104
Query: 338 QLQKRIGNCRVTLLNWSKSHHSNSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKA 159
++++I CR+ ++ WS++ +S K+ ++ ++ N ++ T L A
Sbjct: 105 -VEEKISRCRLEIVKWSRAKQQSSQKLIEENRQKLEEAMSSQDH-NQELLSTINTNLLLA 162
Query: 158 YKNKELF*SQKSRVNWFK*GDKNSKLFHAYTLQRRKMN 45
YK +E + Q+SR W GDKNS FHA T R +N
Sbjct: 163 YKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVIN 200
>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
Length = 1755
Score = 53.5 bits (127), Expect(2) = 7e-09
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Frame = -1
Query: 464 ATPQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSK 285
AT QK + F F+ W D + ++ W P+ L K+I L WSK
Sbjct: 645 ATCQKSRYRR-FHFEAMWTTHVDCEKTIKQVWESVGNLDPMVGLDKKIKQMTWVLQRWSK 703
Query: 284 SHHSN--------SAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQ 129
S + AK++ ++ D + ++ LD+ EL+ Q
Sbjct: 704 STFGHIKEETRVLRAKLASLFQAPYSERVEEDRR-------VVQKSLDELLAKNELYWCQ 756
Query: 128 KSRVNWFK*GDKNSKLFHAYTLQRRKMN 45
+SR NW K GDKN+ FH RR+ N
Sbjct: 757 RSRENWLKAGDKNTSYFHQKATNRRRRN 784
Score = 32.7 bits (73), Expect(2) = 7e-09
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 588 GFVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
GFV+ +DR + W FP VQH + SDH +L+
Sbjct: 601 GFVRVRLDRALATTSWQNLFPGFSVQHLDPSRSDHLPILV 640
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 47.4 bits (111), Expect(2) = 9e-09
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = -1
Query: 434 DFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAK-I 258
DF F+ WL + VV+ AW+ G + + L +WS + + K +
Sbjct: 493 DFRFEAAWLEEEKFKEVVKEAWDVSA-GLQGLPVHASLAGVAAGLSSWSSNVLGDLEKRV 551
Query: 257 SQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLF 78
+ KE + + LR L+K + +++ Q++ NW GD+N+ F
Sbjct: 552 KKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQRAHTNWLNKGDRNTSFF 611
Query: 77 HAYTLQRRKMN 45
HA +RR+ N
Sbjct: 612 HASCSERRRRN 622
Score = 38.5 bits (88), Expect(2) = 9e-09
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = -3
Query: 594 ERGFVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLLD 466
+ G+++E +DR +P+W FP ARV + + + SDH ++++
Sbjct: 435 QEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIE 477
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 50.4 bits (119), Expect(2) = 9e-09
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAW--NKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNSAKI 258
F FD R + +V+++W N+ TP+ + RI +CR + + + NS +
Sbjct: 395 FRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITE---RISSCRQAMARLKHASNLNSEQR 451
Query: 257 SQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLF 78
++ + + + L+ L KA+ ++E++ QKSR W K GD+N+ F
Sbjct: 452 IKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYF 511
Query: 77 HAYTLQRRKMN 45
HA T R N
Sbjct: 512 HACTKTRYSQN 522
Score = 35.4 bits (80), Expect(2) = 9e-09
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 582 VKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLLDCN 460
VK C+DR+F + W FP+A + + SDH +L+ N
Sbjct: 345 VKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFN 385
>gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
Length = 1275
Score = 53.1 bits (126), Expect(2) = 9e-09
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSN------ 270
F F+ W D + ++ W P+ L K+I L WSKS +
Sbjct: 201 FHFEAMWTTHVDCEKTIKQVWESVGDLDPMVGLDKKIKQMTWVLQRWSKSTFGHIKEETR 260
Query: 269 --SAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GD 96
AK++ ++ D + ++ LD+ EL+ Q+SR NW K GD
Sbjct: 261 VLRAKLASLFQAPYSERVEEDRR-------VVQKSLDELLAKNELYWCQRSRENWLKAGD 313
Query: 95 KNSKLFHAYTLQRRKMN 45
KN+ FH RR+ N
Sbjct: 314 KNTSYFHQKATNRRRRN 330
Score = 32.7 bits (73), Expect(2) = 9e-09
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 588 GFVKECIDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
GFV+ +DR + W FP VQH + SDH +L+
Sbjct: 147 GFVRVRLDRALATTSWQNLFPGFSVQHLDPSRSDHLPILV 186
>gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [Prunus persica]
Length = 1146
Score = 63.9 bits (154), Expect(2) = 1e-08
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = -1
Query: 431 FFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSHHSNS-AKIS 255
F F+ W D +++ W + G L +G CR L WSK N+ ++I+
Sbjct: 148 FKFEAYWADEHDCGTIIQRGWKNDIVGDSFAALSANLGVCREELQKWSKEKFPNNLSRIN 207
Query: 254 QQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*GDKNSKLFH 75
K + + ++ + + +E + Q+SR+NW GD N+K FH
Sbjct: 208 LLMKSLSNLQSGPLEENYRHQESAIWDEMSVLWSREETYWKQRSRLNWLSAGDANTKFFH 267
Query: 74 AYTLQRRKMN 45
TLQRR+ N
Sbjct: 268 TTTLQRRQRN 277
Score = 21.6 bits (44), Expect(2) = 1e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 570 IDRIFGSPDWLVQFPHARVQHCEKQASDHSLLLL 469
+DR + WL +P V + SDHS L+L
Sbjct: 102 LDRGLINDQWLFLWPDLCVHVEPRVGSDHSPLVL 135
>gb|EMJ15800.1| hypothetical protein PRUPE_ppa022684mg [Prunus persica]
Length = 696
Score = 65.5 bits (158), Expect = 1e-08
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 4/198 (2%)
Frame = -1
Query: 626 GHPFTWANNREREAL*KNALIEFLDPQIGLS---NSRMLVC-NIVKNRRPTIPYCSLTAT 459
G FTWA E + + L L L N+ + C + +R P I L +
Sbjct: 272 GAQFTWAKKDNGEVVIQERLHRGLVNATWLESWPNTMVSHCPRMGSDRCPII----LNFS 327
Query: 458 PQKLSLKADFFFDKRWLGRDDVDCVVESAWNKQVWGTPLFQLQKRIGNCRVTLLNWSKSH 279
P ++K F F+ W + VV AWN + + + + + NC+ L WS
Sbjct: 328 PTVKNVKPRFRFESFWTENSECHDVVNLAWNMRSGVSGISRWNSCLRNCKRDLKKWSTIR 387
Query: 278 HSNSAKISQQYKEXXXXXXXLDGKGN*GEWKSLRTVLDKAYKNKELF*SQKSRVNWFK*G 99
N+ K+ Q + E K++ L +A+ N+E + Q+ +NW K G
Sbjct: 388 FPNNHKLIHQLMQVLETAQNQSPPCLEAE-KTICDHLSEAWNNEEAYWKQRPHINWLKGG 446
Query: 98 DKNSKLFHAYTLQRRKMN 45
D +S+ FH T QRR+ N
Sbjct: 447 DADSRFFHLSTTQRRRKN 464