BLASTX nr result
ID: Rehmannia23_contig00025019
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00025019
(435 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004172408.1| PREDICTED: cleavage and polyadenylation spec... 72 1e-10
ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation spec... 72 1e-10
emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera] 70 2e-10
gb|EOX96971.1| Cleavage and polyadenylation specificity factor 3... 70 4e-10
emb|CBI30994.3| unnamed protein product [Vitis vinifera] 68 1e-09
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec... 68 1e-09
gb|EXB51974.1| Cleavage and polyadenylation specificity factor C... 66 6e-09
ref|XP_002317344.2| hypothetical protein POPTR_0011s09210g [Popu... 65 7e-09
ref|XP_006468290.1| PREDICTED: cleavage and polyadenylation spec... 64 2e-08
ref|XP_006448925.1| hypothetical protein CICLE_v10014454mg [Citr... 64 2e-08
ref|XP_006448924.1| hypothetical protein CICLE_v10014454mg [Citr... 64 2e-08
ref|XP_002300333.2| zinc finger family protein [Populus trichoca... 64 3e-08
gb|EMJ15374.1| hypothetical protein PRUPE_ppa019072mg [Prunus pe... 62 6e-08
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm... 62 1e-07
ref|XP_006415471.1| hypothetical protein EUTSA_v10007064mg [Eutr... 59 7e-07
ref|XP_002893618.1| hypothetical protein ARALYDRAFT_890588 [Arab... 59 7e-07
ref|XP_006352991.1| PREDICTED: cleavage and polyadenylation spec... 59 9e-07
ref|XP_006359103.1| PREDICTED: cleavage and polyadenylation spec... 58 2e-06
ref|XP_004486563.1| PREDICTED: cleavage and polyadenylation spec... 58 2e-06
ref|XP_006306994.1| hypothetical protein CARUB_v10008570mg [Caps... 58 2e-06
>ref|XP_004172408.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like, partial [Cucumis sativus]
Length = 331
Score = 71.6 bits (174), Expect = 1e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW PHMP + RG RPF GM+GFPP + GPDG Y
Sbjct: 92 GRGRGRGMMWPPHMP-MGRGARPFHGMQGFPPGMMGPDGLSY 132
>ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cucumis sativus]
Length = 707
Score = 71.6 bits (174), Expect = 1e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW PHMP + RG RPF GM+GFPP + GPDG Y
Sbjct: 468 GRGRGRGMMWPPHMP-MGRGARPFHGMQGFPPGMMGPDGLSY 508
>emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]
Length = 299
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/49 (71%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 ALGQAF-GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
ALG A GRGRGRG+MW PHMP LARG RP GMRGFPP + G DGF Y
Sbjct: 69 ALGPAAQGRGRGRGIMWPPHMP-LARGARPIPGMRGFPPVMMGADGFSY 116
>gb|EOX96971.1| Cleavage and polyadenylation specificity factor 30 [Theobroma
cacao]
Length = 698
Score = 69.7 bits (169), Expect = 4e-10
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +2
Query: 53 AFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
A GRGRGRG+MW PHMP LARG RP GMRGFPP + G DGF Y
Sbjct: 457 AQGRGRGRGVMWPPHMP-LARGARPMPGMRGFPPMMMGGDGFSY 499
>emb|CBI30994.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/49 (69%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 ALGQAF-GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
ALG A GRGRGRG+MW PHMP LARG RP MRGFPP + G DGF Y
Sbjct: 371 ALGPAAQGRGRGRGIMWPPHMP-LARGARPIPSMRGFPPVMMGADGFSY 418
>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Vitis vinifera]
Length = 673
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/49 (69%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 ALGQAF-GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
ALG A GRGRGRG+MW PHMP LARG RP MRGFPP + G DGF Y
Sbjct: 444 ALGPAAQGRGRGRGIMWPPHMP-LARGARPIPSMRGFPPVMMGADGFSY 491
>gb|EXB51974.1| Cleavage and polyadenylation specificity factor CPSF30 [Morus
notabilis]
Length = 710
Score = 65.9 bits (159), Expect = 6e-09
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +2
Query: 44 LGQAFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
LG GRGRGRG+MW PHMP L+RG RP M+GFPP + G DG PY
Sbjct: 464 LGANQGRGRGRGVMWPPHMP-LSRGARPMPSMQGFPPVMIGADGSPY 509
>ref|XP_002317344.2| hypothetical protein POPTR_0011s09210g [Populus trichocarpa]
gi|550327985|gb|EEE97956.2| hypothetical protein
POPTR_0011s09210g [Populus trichocarpa]
Length = 381
Score = 65.5 bits (158), Expect = 7e-09
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = +2
Query: 53 AFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
A GRGRGRG+MW PH+P +ARG RP GMR FPP + G DGF Y
Sbjct: 143 AQGRGRGRGIMWPPHIP-IARGARPIPGMRAFPPMMMGADGFSY 185
>ref|XP_006468290.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Citrus sinensis]
Length = 683
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW P PLARG RP GMRGFPP + G DGF Y
Sbjct: 444 GRGRGRGMMW-PGPMPLARGARPVPGMRGFPPMMIGADGFSY 484
>ref|XP_006448925.1| hypothetical protein CICLE_v10014454mg [Citrus clementina]
gi|557551536|gb|ESR62165.1| hypothetical protein
CICLE_v10014454mg [Citrus clementina]
Length = 672
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW P PLARG RP GMRGFPP + G DGF Y
Sbjct: 433 GRGRGRGMMW-PGPMPLARGARPVPGMRGFPPMMIGADGFSY 473
>ref|XP_006448924.1| hypothetical protein CICLE_v10014454mg [Citrus clementina]
gi|557551535|gb|ESR62164.1| hypothetical protein
CICLE_v10014454mg [Citrus clementina]
Length = 701
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW P PLARG RP GMRGFPP + G DGF Y
Sbjct: 462 GRGRGRGMMW-PGPMPLARGARPVPGMRGFPPMMIGADGFSY 502
>ref|XP_002300333.2| zinc finger family protein [Populus trichocarpa]
gi|550349048|gb|EEE85138.2| zinc finger family protein
[Populus trichocarpa]
Length = 669
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +2
Query: 53 AFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
A GRGRGRGMMW H P +ARG RP G+RGFPP + G DGF Y
Sbjct: 462 AQGRGRGRGMMWPSHNP-MARGARPIPGIRGFPPMMMGADGFSY 504
>gb|EMJ15374.1| hypothetical protein PRUPE_ppa019072mg [Prunus persica]
Length = 695
Score = 62.4 bits (150), Expect = 6e-08
Identities = 29/43 (67%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Frame = +2
Query: 59 GRGRGRG-MMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRG +MW PHMP LARG RP GM+GFPP + G D PY
Sbjct: 460 GRGRGRGGIMWPPHMP-LARGGRPMPGMQGFPPGMMGADAMPY 501
>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
gi|223537608|gb|EEF39232.1| conserved hypothetical
protein [Ricinus communis]
Length = 702
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRG++W PHMP LARG RP GMRGFPP + G D F Y
Sbjct: 473 GRGRGRGIIW-PHMP-LARGARPIPGMRGFPPMMMGADSFSY 512
>ref|XP_006415471.1| hypothetical protein EUTSA_v10007064mg [Eutrema salsugineum]
gi|557093242|gb|ESQ33824.1| hypothetical protein
EUTSA_v10007064mg [Eutrema salsugineum]
Length = 630
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/43 (67%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGP-DGFPY 184
GRGRGRGMMW P M PL RG RP GM GFP + GP D FPY
Sbjct: 441 GRGRGRGMMWPPQM-PLGRGIRPMPGMGGFPLGVMGPADAFPY 482
>ref|XP_002893618.1| hypothetical protein ARALYDRAFT_890588 [Arabidopsis lyrata subsp.
lyrata] gi|297339460|gb|EFH69877.1| hypothetical protein
ARALYDRAFT_890588 [Arabidopsis lyrata subsp. lyrata]
Length = 631
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/43 (67%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGP-DGFPY 184
GRGRGRGMMW P M PL RG RP GM GFP + GP D FPY
Sbjct: 439 GRGRGRGMMWPPQM-PLGRGIRPMPGMGGFPLGVMGPGDAFPY 480
>ref|XP_006352991.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Solanum tuberosum]
Length = 677
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/59 (52%), Positives = 35/59 (59%), Gaps = 14/59 (23%)
Frame = +2
Query: 47 GQAFG-----RGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTG---------PDGFP 181
GQAFG RGRGRG++W P + P RG RPF GMRGFPP + PDGFP
Sbjct: 453 GQAFGPAALGRGRGRGIVWPP-LVPFGRGARPFPGMRGFPPGMMSDGFSYGSMTPDGFP 510
>ref|XP_006359103.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Solanum tuberosum]
Length = 692
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/44 (63%), Positives = 30/44 (68%)
Frame = +2
Query: 53 AFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
A GRGRGRG+ W P MP GPRP GMRGFPP + G DGF Y
Sbjct: 465 ALGRGRGRGIAWPPIMP-FGHGPRPPPGMRGFPPGMMG-DGFSY 506
>ref|XP_004486563.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cicer arietinum]
Length = 677
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +2
Query: 59 GRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGPDGFPY 184
GRGRGRGMMW PHM PL RG RP GM+GF P + G DG Y
Sbjct: 458 GRGRGRGMMWPPHM-PLGRGARPMPGMQGFNPVMMG-DGLSY 497
>ref|XP_006306994.1| hypothetical protein CARUB_v10008570mg [Capsella rubella]
gi|482575705|gb|EOA39892.1| hypothetical protein
CARUB_v10008570mg [Capsella rubella]
Length = 631
Score = 57.8 bits (138), Expect = 2e-06
Identities = 29/48 (60%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 44 LGQAFGRGRGRGMMWAPHMPPLARGPRPFQGMRGFPPNLTGP-DGFPY 184
+G GRGRGRGMMW P M PL RG RP G+ GFP + GP D FPY
Sbjct: 436 VGGPQGRGRGRGMMWPPQM-PLGRGIRPMPGIGGFPLGVMGPGDAFPY 482