BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00025001
         (539 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK21876.1| unknown [Picea sitchensis] gi|116782420|gb|ABK224...   210   1e-52
gb|ABK22359.1| unknown [Picea sitchensis]                             210   1e-52
gb|ABK21852.1| unknown [Picea sitchensis]                             210   1e-52
gb|ABK26083.1| unknown [Picea sitchensis]                             209   4e-52
ref|XP_002888576.1| ribulose bisphosphate carboxylase small chai...   208   6e-52
gb|ACN40169.1| unknown [Picea sitchensis]                             208   7e-52
gb|ABK21259.1| unknown [Picea sitchensis] gi|116779401|gb|ABK212...   208   7e-52
gb|ABK21447.1| unknown [Picea sitchensis] gi|116780594|gb|ABK217...   207   1e-51
gb|ABK21690.1| unknown [Picea sitchensis]                             207   1e-51
gb|ACN40281.1| unknown [Picea sitchensis]                             207   1e-51
ref|XP_006405770.1| hypothetical protein EUTSA_v10027955mg [Eutr...   207   2e-51
ref|XP_006302885.1| hypothetical protein CARUB_v10021016mg [Caps...   207   2e-51
gb|ABK21347.1| unknown [Picea sitchensis] gi|116780861|gb|ABK218...   207   2e-51
ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1...   206   2e-51
sp|P05346.2|RBS1_BRANA RecName: Full=Ribulose bisphosphate carbo...   206   2e-51
ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1...   206   3e-51
ref|XP_002868776.1| ribulose bisphosphate carboxylase [Arabidops...   206   3e-51
emb|CAA32702.1| ribulose bisphosphate carboxylase [Arabidopsis t...   206   4e-51
sp|P27985.1|RBS2_BRANA RecName: Full=Ribulose bisphosphate carbo...   206   4e-51
gb|ACQ90230.1| virus-resistance protein [Brassica rapa subsp. ch...   206   4e-51

>gb|ABK21876.1| unknown [Picea sitchensis] gi|116782420|gb|ABK22499.1| unknown
           [Picea sitchensis] gi|116784603|gb|ABK23405.1| unknown
           [Picea sitchensis] gi|116793621|gb|ABK26814.1| unknown
           [Picea sitchensis] gi|116793637|gb|ABK26822.1| unknown
           [Picea sitchensis] gi|116794195|gb|ABK27041.1| unknown
           [Picea sitchensis] gi|148907673|gb|ABR16965.1| unknown
           [Picea sitchensis] gi|224285721|gb|ACN40576.1| unknown
           [Picea sitchensis]
          Length = 193

 Score =  210 bits (535), Expect = 1e-52
 Identities = 106/191 (55%), Positives = 126/191 (65%), Gaps = 22/191 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTS----------------------LMRPLELSKAPSSVA 146
           MAS+++SS A  M+AV AP KTS                          +++S A +   
Sbjct: 1   MASAIMSSAA-AMAAVAAPPKTSNGNGSSNGNVVSAFTGLKSTAQFPSSMKISNAGAEWE 59

Query: 147 KGNKKSASTTKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEEG 326
           +    +    + M VWP     KFETLSYLP LTQEQL KE++YLLRNKWVPCLEFDE+G
Sbjct: 60  RKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDEDG 119

Query: 327 TISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQ 506
            I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN RQ
Sbjct: 120 IIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQ 179

Query: 507 VQCISFIVHKP 539
           VQCISFIVHKP
Sbjct: 180 VQCISFIVHKP 190


>gb|ABK22359.1| unknown [Picea sitchensis]
          Length = 193

 Score =  210 bits (535), Expect = 1e-52
 Identities = 106/191 (55%), Positives = 126/191 (65%), Gaps = 22/191 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTS----------------------LMRPLELSKAPSSVA 146
           MAS+++SS A  M+AV AP KTS                          +++S A +   
Sbjct: 1   MASAIMSSAA-AMAAVAAPPKTSNGSGSSNGNVVSAFTGLKSTAQFPSSMKISNAGAEWE 59

Query: 147 KGNKKSASTTKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEEG 326
           +    +    + M VWP     KFETLSYLP LTQEQL KE++YLLRNKWVPCLEFDE+G
Sbjct: 60  RKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDEDG 119

Query: 327 TISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQ 506
            I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN RQ
Sbjct: 120 IIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQ 179

Query: 507 VQCISFIVHKP 539
           VQCISFIVHKP
Sbjct: 180 VQCISFIVHKP 190


>gb|ABK21852.1| unknown [Picea sitchensis]
          Length = 193

 Score =  210 bits (535), Expect = 1e-52
 Identities = 106/191 (55%), Positives = 126/191 (65%), Gaps = 22/191 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTS----------------------LMRPLELSKAPSSVA 146
           MAS+++SS A  M+AV AP KTS                          +++S A +   
Sbjct: 1   MASAIMSSAA-AMAAVAAPPKTSNGNGSSNGNVVAAFTGLKSTAQFPSSMKISNAGAEWE 59

Query: 147 KGNKKSASTTKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEEG 326
           +    +    + M VWP     KFETLSYLP LTQEQL KE++YLLRNKWVPCLEFDE+G
Sbjct: 60  RKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDEDG 119

Query: 327 TISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQ 506
            I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN RQ
Sbjct: 120 IIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQ 179

Query: 507 VQCISFIVHKP 539
           VQCISFIVHKP
Sbjct: 180 VQCISFIVHKP 190


>gb|ABK26083.1| unknown [Picea sitchensis]
          Length = 159

 Score =  209 bits (531), Expect = 4e-52
 Identities = 105/171 (61%), Positives = 120/171 (70%), Gaps = 2/171 (1%)
 Frame = +3

Query: 33  MASSLLS-SPAMGMSAVVAPAKTSLMRPLELSKAPSSVAKGNKKS-ASTTKAMLVWPNKG 206
           MASS+++ S    ++AV AP KTS                GN  S     + M VWP   
Sbjct: 1   MASSIMALSSTAAVAAVAAPPKTS---------------NGNGSSNGGRVRCMQVWPPYN 45

Query: 207 KIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEEGTISRKYGATPGYYDGRYWTM 386
             KFETLSYLP LTQEQL KE++YLLRNKWVPCLEFDE+G I RKYG+TPGYYDGRYW M
Sbjct: 46  NPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVM 105

Query: 387 WKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           WKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN RQVQCISFIVHKP
Sbjct: 106 WKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 156


>ref|XP_002888576.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
           lyrata subsp. lyrata] gi|297334417|gb|EFH64835.1|
           ribulose bisphosphate carboxylase small chain 1A
           [Arabidopsis lyrata subsp. lyrata]
          Length = 180

 Score =  208 bits (530), Expect = 6e-52
 Identities = 105/179 (58%), Positives = 130/179 (72%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRP---LELSKAPSSVAKGNKKSASTTK------AM 185
           MASS+LSS  M    V +PA+ +++ P   L+ S A  +  K N    S T        M
Sbjct: 1   MASSMLSSATM----VASPAQATMVAPFTGLKSSAAFPATRKANNDITSITSNGGRVNCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT  +L+KE+DYLLRNKW+PC+EF+ E G + R++G +PGY
Sbjct: 57  QVWPPVGKKKFETLSYLPDLTDSELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNSPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E+EE KKEYP+AF+R IGFDN+RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPEAFIRIIGFDNSRQVQCISFIAYKP 175


>gb|ACN40169.1| unknown [Picea sitchensis]
          Length = 194

 Score =  208 bits (529), Expect = 7e-52
 Identities = 110/192 (57%), Positives = 129/192 (67%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELS--------------KAPSSVAKGN----- 155
           MAS+++SS A  M+AV AP KTS       S              + PSS+   N     
Sbjct: 1   MASAIMSSAA-AMAAVAAPLKTSNGNGSSSSDNVVSAFTGLKSTAQFPSSMKTNNAGAEW 59

Query: 156 -KKSAST---TKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +K+ S     + M VWP     KFETLSYLP LTQEQL KE++YLL+NKWVPCLEFDE+
Sbjct: 60  ERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 119

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 120 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 179

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 180 QVQCISFIVHKP 191


>gb|ABK21259.1| unknown [Picea sitchensis] gi|116779401|gb|ABK21267.1| unknown
           [Picea sitchensis] gi|116779440|gb|ABK21283.1| unknown
           [Picea sitchensis] gi|116781990|gb|ABK22328.1| unknown
           [Picea sitchensis] gi|116782020|gb|ABK22337.1| unknown
           [Picea sitchensis] gi|116782035|gb|ABK22342.1| unknown
           [Picea sitchensis] gi|116784457|gb|ABK23349.1| unknown
           [Picea sitchensis] gi|116785630|gb|ABK23799.1| unknown
           [Picea sitchensis] gi|116786299|gb|ABK24056.1| unknown
           [Picea sitchensis] gi|116791702|gb|ABK26077.1| unknown
           [Picea sitchensis] gi|116792861|gb|ABK26530.1| unknown
           [Picea sitchensis] gi|148905732|gb|ABR16030.1| unknown
           [Picea sitchensis] gi|224284032|gb|ACN39754.1| unknown
           [Picea sitchensis] gi|224284134|gb|ACN39804.1| unknown
           [Picea sitchensis] gi|224284171|gb|ACN39822.1| unknown
           [Picea sitchensis] gi|224284301|gb|ACN39886.1| unknown
           [Picea sitchensis] gi|224284342|gb|ACN39906.1| unknown
           [Picea sitchensis] gi|224284389|gb|ACN39929.1| unknown
           [Picea sitchensis] gi|224284796|gb|ACN40128.1| unknown
           [Picea sitchensis] gi|224284941|gb|ACN40200.1| unknown
           [Picea sitchensis] gi|224284998|gb|ACN40228.1| unknown
           [Picea sitchensis] gi|224285010|gb|ACN40234.1| unknown
           [Picea sitchensis] gi|224285109|gb|ACN40282.1| unknown
           [Picea sitchensis] gi|224285123|gb|ACN40289.1| unknown
           [Picea sitchensis] gi|224285656|gb|ACN40544.1| unknown
           [Picea sitchensis] gi|224285893|gb|ACN40660.1| unknown
           [Picea sitchensis]
          Length = 194

 Score =  208 bits (529), Expect = 7e-52
 Identities = 110/192 (57%), Positives = 129/192 (67%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELS--------------KAPSSVAKGN----- 155
           MAS+++SS A  M+AV AP KTS       S              + PSS+   N     
Sbjct: 1   MASAIMSSAA-AMAAVAAPLKTSNGNGSSSSGNVVSAFTGLKSTAQFPSSMKTNNAGAEW 59

Query: 156 -KKSAST---TKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +K+ S     + M VWP     KFETLSYLP LTQEQL KE++YLL+NKWVPCLEFDE+
Sbjct: 60  ERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 119

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 120 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 179

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 180 QVQCISFIVHKP 191


>gb|ABK21447.1| unknown [Picea sitchensis] gi|116780594|gb|ABK21733.1| unknown
           [Picea sitchensis] gi|116782047|gb|ABK22347.1| unknown
           [Picea sitchensis] gi|116783228|gb|ABK22845.1| unknown
           [Picea sitchensis] gi|116785645|gb|ABK23805.1| unknown
           [Picea sitchensis] gi|116785985|gb|ABK23931.1| unknown
           [Picea sitchensis] gi|116786044|gb|ABK23949.1| unknown
           [Picea sitchensis] gi|116790039|gb|ABK25479.1| unknown
           [Picea sitchensis] gi|116793644|gb|ABK26825.1| unknown
           [Picea sitchensis] gi|224284814|gb|ACN40137.1| unknown
           [Picea sitchensis] gi|224285468|gb|ACN40456.1| unknown
           [Picea sitchensis] gi|224285619|gb|ACN40528.1| unknown
           [Picea sitchensis] gi|224285683|gb|ACN40557.1| unknown
           [Picea sitchensis]
          Length = 194

 Score =  207 bits (528), Expect = 1e-51
 Identities = 110/192 (57%), Positives = 129/192 (67%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELS--------------KAPSSVAKGN----- 155
           MAS+++SS A  M+AV AP KTS       S              + PSS+   N     
Sbjct: 1   MASAIMSSAA-AMAAVAAPLKTSNGNGSSSSGNVVSAFTGLKSTAQFPSSMKTNNAGAEW 59

Query: 156 -KKSAST---TKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +K+ S     + M VWP     KFETLSYLP LTQEQL KE++YLL+NKWVPCLEFDE+
Sbjct: 60  EQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 119

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 120 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 179

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 180 QVQCISFIVHKP 191


>gb|ABK21690.1| unknown [Picea sitchensis]
          Length = 194

 Score =  207 bits (528), Expect = 1e-51
 Identities = 110/192 (57%), Positives = 129/192 (67%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELS--------------KAPSSVAKGN----- 155
           MAS+++SS A  M+AV AP KTS       S              + PSS+   N     
Sbjct: 1   MASAIMSSAA-AMAAVAAPLKTSNGNGSSSSGNVVSAFTGLKSTAQFPSSMKTNNAGAEL 59

Query: 156 -KKSAST---TKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +K+ S     + M VWP     KFETLSYLP LTQEQL KE++YLL+NKWVPCLEFDE+
Sbjct: 60  EQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 119

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 120 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 179

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 180 QVQCISFIVHKP 191


>gb|ACN40281.1| unknown [Picea sitchensis]
          Length = 194

 Score =  207 bits (527), Expect = 1e-51
 Identities = 110/192 (57%), Positives = 129/192 (67%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELS--------------KAPSSVAKGN----- 155
           MAS+++SS A  M+AV AP KTS       S              + PSS+   N     
Sbjct: 1   MASAIMSSAA-AMAAVAAPLKTSNGNGSSSSGNVVSAFTGLKSTAQFPSSMKTNNAGAEW 59

Query: 156 -KKSAST---TKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +K+ S     + M VWP     KFETLSYLP LTQEQL KE++YLL+NKWVPCLEFDE+
Sbjct: 60  ERKTTSNGGRVRYMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 119

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 120 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 179

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 180 QVQCISFIVHKP 191


>ref|XP_006405770.1| hypothetical protein EUTSA_v10027955mg [Eutrema salsugineum]
           gi|557106908|gb|ESQ47223.1| hypothetical protein
           EUTSA_v10027955mg [Eutrema salsugineum]
          Length = 181

 Score =  207 bits (526), Expect = 2e-51
 Identities = 101/179 (56%), Positives = 130/179 (72%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELSKAPSSVAKGNKKSASTTK---------AM 185
           MASS+LSS A+    V +PA+ +++ P    K+ ++     K +   T           M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT+ +L+KE+DYLLRNKW+PC+EF+ E G + R++G+TPGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLTEVELAKEVDYLLRNKWIPCVEFELENGFVHREHGSTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E++E KKEYP+AF+R IGFDN RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPQAFIRIIGFDNTRQVQCISFIAYKP 175


>ref|XP_006302885.1| hypothetical protein CARUB_v10021016mg [Capsella rubella]
           gi|482571595|gb|EOA35783.1| hypothetical protein
           CARUB_v10021016mg [Capsella rubella]
          Length = 181

 Score =  207 bits (526), Expect = 2e-51
 Identities = 105/179 (58%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRP---LELSKAPSSVAKGNKKSASTTK------AM 185
           MASS+LSS  M    V +PA+ +++ P   L+ S A  S  K N    S T        M
Sbjct: 1   MASSMLSSATM----VASPAQATMVAPFTGLKSSAAFPSTRKANNDITSITSNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP L++ +L KE+DYLLRNKW+PC+EF+ E G + R++G TPGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSEVELGKEVDYLLRNKWIPCVEFELENGFVHREHGNTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E+ E KKEYP+AF+R IGFDN RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVNECKKEYPEAFIRIIGFDNTRQVQCISFIAYKP 175


>gb|ABK21347.1| unknown [Picea sitchensis] gi|116780861|gb|ABK21851.1| unknown
           [Picea sitchensis] gi|148905962|gb|ABR16142.1| unknown
           [Picea sitchensis] gi|224284092|gb|ACN39783.1| unknown
           [Picea sitchensis] gi|224284864|gb|ACN40162.1| unknown
           [Picea sitchensis] gi|224285028|gb|ACN40243.1| unknown
           [Picea sitchensis]
          Length = 195

 Score =  207 bits (526), Expect = 2e-51
 Identities = 104/192 (54%), Positives = 125/192 (65%), Gaps = 23/192 (11%)
 Frame = +3

Query: 33  MASSLLS-SPAMGMSAVVAPAKTS----------------------LMRPLELSKAPSSV 143
           MASS+++ S    ++AV AP KTS                          +++S A +  
Sbjct: 1   MASSIMALSSTAAVAAVAAPPKTSNGNGSSNGNVVSAFTGLKSTAQFPSSMKISNAGAEW 60

Query: 144 AKGNKKSASTTKAMLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFDEE 323
            +    +    + M VWP     KFETLSYLP LTQEQL KE++YLLRNKWVPCLEFDE+
Sbjct: 61  ERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDED 120

Query: 324 GTISRKYGATPGYYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNR 503
           G I RKYG+TPGYYDGRYW MWKLPMFGC +++ VL E+ E  K YPKAF+R IGFDN R
Sbjct: 121 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 180

Query: 504 QVQCISFIVHKP 539
           QVQCISFIVHKP
Sbjct: 181 QVQCISFIVHKP 192


>ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
           thaliana] gi|27735223|sp|P10795.2|RBS1A_ARATH RecName:
           Full=Ribulose bisphosphate carboxylase small chain 1A,
           chloroplastic; Short=RuBisCO small subunit 1A; Flags:
           Precursor gi|11762170|gb|AAG40363.1|AF325011_1 000C10C11
           [Arabidopsis thaliana]
           gi|15294200|gb|AAK95277.1|AF410291_1 F1O19.10/F1O19.10
           [Arabidopsis thaliana] gi|4204274|gb|AAD10655.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|15451002|gb|AAK96772.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|15809842|gb|AAL06849.1|
           At1g67090/F1O19.10 [Arabidopsis thaliana]
           gi|16604426|gb|AAL24219.1| At1g67090/F1O19.10
           [Arabidopsis thaliana] gi|16649141|gb|AAL24422.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|17065072|gb|AAL32690.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|17065270|gb|AAL32789.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|17473628|gb|AAL38277.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|20260064|gb|AAM13379.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|20260080|gb|AAM13387.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana] gi|20453287|gb|AAM19882.1|
           At1g67090/F1O19.10 [Arabidopsis thaliana]
           gi|23198308|gb|AAN15681.1| ribulose bisphosphate
           carboxylase, small subunit [Arabidopsis thaliana]
           gi|25083492|gb|AAN72087.1| ribulose bisphosphate
           carboxylase, small subunit [Arabidopsis thaliana]
           gi|110741032|dbj|BAE98610.1| ribulose bisphosphate
           carboxylase like protein, small subunit [Arabidopsis
           thaliana] gi|110741446|dbj|BAE98685.1| ribulose
           bisphosphate carboxylase like protein, small subunit
           [Arabidopsis thaliana] gi|110741475|dbj|BAE98695.1|
           ribulose bisphosphate carboxylase like protein, small
           subunit [Arabidopsis thaliana]
           gi|110741865|dbj|BAE98874.1| ribulose bisphosphate
           carboxylase like protein, small subunit [Arabidopsis
           thaliana] gi|332196473|gb|AEE34594.1| ribulose
           bisphosphate carboxylase small chain 1A [Arabidopsis
           thaliana]
          Length = 180

 Score =  206 bits (525), Expect = 2e-51
 Identities = 104/179 (58%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRP---LELSKAPSSVAKGNKKSASTTK------AM 185
           MASS+LSS  M    V +PA+ +++ P   L+ S A  +  K N    S T        M
Sbjct: 1   MASSMLSSATM----VASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT  +L+KE+DYL+RNKW+PC+EF+ E G + R++G +PGY
Sbjct: 57  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E+EE KKEYP AF+R IGFDN RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P05346.2|RBS1_BRANA RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|17850|emb|CAA43410.1| ribulose bisphosphate
           carboxylase [Brassica napus]
          Length = 181

 Score =  206 bits (525), Expect = 2e-51
 Identities = 102/179 (56%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELSKAPSSVAKGNKKSASTTK---------AM 185
           MASS+LSS A+    V +PA+ +++ P    K+ S+     K +   T           M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT+ +L KE+DYLLRNKW+PC+EF+ E G + R++G+TPGY
Sbjct: 57  KVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E++E K EYP AF+R IGFDNNRQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1B [Arabidopsis
           thaliana] gi|132090|sp|P10796.1|RBS1B_ARATH RecName:
           Full=Ribulose bisphosphate carboxylase small chain 1B,
           chloroplastic; Short=RuBisCO small subunit 1B; Flags:
           Precursor gi|15294184|gb|AAK95269.1|AF410283_1
           F1O19.10/F1O19.10 [Arabidopsis thaliana]
           gi|16193|emb|CAA32700.1| ribulose bisphosphate
           carboxylase [Arabidopsis thaliana]
           gi|9758821|dbj|BAB09355.1| ribulose bisphosphate
           carboxylase small chain 1b precursor (RuBisCO small
           subunit 1b) [Arabidopsis thaliana]
           gi|23505787|gb|AAN28753.1| At5g38430/F1O19.10
           [Arabidopsis thaliana] gi|332006932|gb|AED94315.1|
           ribulose bisphosphate carboxylase small chain 1B
           [Arabidopsis thaliana]
          Length = 181

 Score =  206 bits (524), Expect = 3e-51
 Identities = 105/179 (58%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELSKAPSS---VAKGNKKSASTTK------AM 185
           MASS+LSS A+    V +PA+ +++ P    K+ +S     K N    S T        M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT  +L+KE+DYLLRNKW+PC+EF+ E G + R++G TPGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E+EE KKEYP AF+R IGFDN RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>ref|XP_002868776.1| ribulose bisphosphate carboxylase [Arabidopsis lyrata subsp.
           lyrata] gi|297314612|gb|EFH45035.1| ribulose
           bisphosphate carboxylase [Arabidopsis lyrata subsp.
           lyrata]
          Length = 181

 Score =  206 bits (524), Expect = 3e-51
 Identities = 102/179 (56%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRPLELSKAPSSVAKGNKKSASTTK---------AM 185
           MASS+LSS A+    V +PA+ +++ P    K+ ++     K +   T           M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFSGLKSSAAFPVTRKANNDITSIASNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT  +L+KE+DYLLRNKW+PC+EF+ E G + R++G TPGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E++E KKEYP AF+R IGFDNNRQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>emb|CAA32702.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
          Length = 181

 Score =  206 bits (523), Expect = 4e-51
 Identities = 106/179 (59%), Positives = 129/179 (72%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRP---LELSKAPSSVAKGNKKSASTTK------AM 185
           MASS+LSS A+    V +PA+ +++ P   L+ S A     K NK   S T        M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSITSNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP L+  +L+KE+DYLLRNKW+PC+EF+ E G + R++G TPGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E+EE KKEYP AF+R IGFDN RQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P27985.1|RBS2_BRANA RecName: Full=Ribulose bisphosphate carboxylase small chain F1,
           chloroplastic; Short=RuBisCO small subunit F1; Flags:
           Precursor gi|17852|emb|CAA39402.1| ribulose bisphosphate
           carboxylase /oxygenase small subunit [Brassica napus]
          Length = 181

 Score =  206 bits (523), Expect = 4e-51
 Identities = 104/179 (58%), Positives = 128/179 (71%), Gaps = 10/179 (5%)
 Frame = +3

Query: 33  MASSLLSSPAMGMSAVVAPAKTSLMRP---LELSKAPSSVAKGNKKSASTTK------AM 185
           MASS+LSS A+    V +PA+ +++ P   L+ S A     K N    S          M
Sbjct: 1   MASSMLSSAAV----VTSPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCM 56

Query: 186 LVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPGY 362
            VWP  GK KFETLSYLP LT+ +L KE+DYLLRNKW+PC+EF+ E G + R++G+TPGY
Sbjct: 57  KVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGY 116

Query: 363 YDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YDGRYWTMWKLP+FGC DSA VL+E++E K EYP AF+R IGFDNNRQVQCISFI +KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>gb|ACQ90230.1| virus-resistance protein [Brassica rapa subsp. chinensis]
          Length = 249

 Score =  206 bits (523), Expect = 4e-51
 Identities = 101/180 (56%), Positives = 128/180 (71%), Gaps = 10/180 (5%)
 Frame = +3

Query: 30  RMASSLLSSPAMGMSAVVAPAKTSLMRPLELSKAPSSVAKGNKKSASTTK---------A 182
           +MASS+LSS A+  S    PA+ +++ P    K+ ++     K +   T           
Sbjct: 68  QMASSMLSSAAVATS----PAQATMVAPFTGLKSSAAFPVTRKSNTDITSIASNGGRVSC 123

Query: 183 MLVWPNKGKIKFETLSYLPPLTQEQLSKEIDYLLRNKWVPCLEFD-EEGTISRKYGATPG 359
           M VWP  GK KFETLSYLP LT  +L+KE+DYLLRNKW+PC+EF+ E G + R++G+TPG
Sbjct: 124 MKVWPPVGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPG 183

Query: 360 YYDGRYWTMWKLPMFGCNDSALVLREIEEVKKEYPKAFVRCIGFDNNRQVQCISFIVHKP 539
           YYDGRYWTMWKLP+FGC DSA VL+E++E K EYP AF+R IGFDNNRQVQCISFI +KP
Sbjct: 184 YYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 243