BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00023723
         (1403 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   433   e-119
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   425   e-116
gb|AAB82754.1| retrofit [Oryza longistaminata]                        385   e-104
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  384   e-104
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   382   e-103
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   379   e-102
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   379   e-102
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   378   e-102
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   377   e-102
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   377   e-102
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]   376   e-101
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  374   e-101
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   373   e-100
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   372   e-100
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   371   e-100
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]   370   e-100
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   370   e-99 
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   369   1e-99
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   369   1e-99
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   368   3e-99

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  433 bits (1114), Expect = e-119
 Identities = 217/408 (53%), Positives = 290/408 (71%), Gaps = 3/408 (0%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDY--VCKLNKALYGLKQASKTWFDK 186
            IRQ+D++NAFLNGEL +  E+YM QPPGF+ +   +   VCKL+KALYGLKQA + WFDK
Sbjct: 851  IRQLDVNNAFLNGELQE--EVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDK 908

Query: 187  LRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFS 366
            L+  LQ  GFS++K+D SLF R +  S             TGSS+++I ++I  L   FS
Sbjct: 909  LKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFS 968

Query: 367  LKDLGALHFFLGIEVNYMKDG-IILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFE 543
            LKDLG L +FLGIEV    DG + L+QKKYIQDLL K  M  AK                
Sbjct: 969  LKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGM 1028

Query: 544  GNCFPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTT 723
            G+   +   YR V+G LQY+TITRPEI ++VNK+ Q+MQ PLD+HWKAVKR+LRY++GTT
Sbjct: 1029 GDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTT 1088

Query: 724  DYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAE 903
            D G+ L  +  + + GF D+DW SD DDR+STSGHC+F+GK+L+ WSS+KQ T SRSS E
Sbjct: 1089 DLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTE 1148

Query: 904  AEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDL 1083
            AEYRSLA+  +E+LWL+SL  ELQ  ++  PVIW DN+S V +S+NPV+ +RTKH+E+DL
Sbjct: 1149 AEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRTKHMELDL 1208

Query: 1084 HFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +F+REKV ++ ++V+H+P +DQ+AD  TKPL+ +FF ++R KL V SL
Sbjct: 1209 YFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVASL 1256


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  425 bits (1092), Expect = e-116
 Identities = 208/418 (49%), Positives = 285/418 (68%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            RN  I+Q+D++NAFLNG+L +  E++M QP GF      + VC+L+KALYGLKQA + WF
Sbjct: 1037 RNWAIKQLDVNNAFLNGDLQE--EVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWF 1094

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
            +KL   L S GF ++K+D SLF R +P                GS    I  +I  L S 
Sbjct: 1095 EKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSE 1154

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            FSLKDLG +H+FLGI+V++  +G+ L+Q KYI+DLL K  M   K               
Sbjct: 1155 FSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVG 1214

Query: 541  EGNCFPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGT 720
            +G+   D   YR  +G LQY+TITRPE++++VNK+ Q+MQNP + HWK VKR+LRY+ GT
Sbjct: 1215 DGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGT 1274

Query: 721  TDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSA 900
              +GL L K+++L + GF D+DWASD DDR+STSGHC+F+G NLI W S+KQ  VSRSS 
Sbjct: 1275 LQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSI 1334

Query: 901  EAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEID 1080
            E EYRSLA  + E+ WL+SL  ELQ+PL+ PP++W DNLS V +S+NPV+ ARTKH+E+D
Sbjct: 1335 EIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELD 1394

Query: 1081 LHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGDI 1254
            L+F+REKV +K + V H+P+ DQ+AD LTK ++   F   R+KL + +LS+L L+GD+
Sbjct: 1395 LYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIENLSTLSLRGDV 1452


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  385 bits (990), Expect = e-104
 Identities = 191/411 (46%), Positives = 266/411 (64%), Gaps = 2/411 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPGFE  +K DYVCKL+KALYGLKQA + W+
Sbjct: 1037 RGWSLRQLDVQNAFLHGFLEE--EVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWY 1094

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L   L  LGF ASKADTSLFF N                   S+ +    ++K L   
Sbjct: 1095 SRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKE 1154

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV  + +G+ILTQ+KY  DLL +V+M++ K              +
Sbjct: 1155 FALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLY 1214

Query: 541  EGNCFP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG+     D + YR ++G LQYLT+TRP+I Y+VNK+ Q++  P  SHW AVKR+LRY++
Sbjct: 1215 EGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLN 1274

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
              T  GL + K+   ++ G+SD+DWA   DDRKST G  +F+G NL+ WS+RKQPTVSRS
Sbjct: 1275 QCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1334

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY+++A    E++W+++L  EL I       IW DNL A ++S+NPV  ARTKH+E
Sbjct: 1335 STEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIE 1394

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +D HF+RE+V QK + +  +P+ DQ+AD  TK L+       ++ L++  L
Sbjct: 1395 VDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFKHNLNLARL 1445


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  384 bits (985), Expect = e-104
 Identities = 190/411 (46%), Positives = 266/411 (64%), Gaps = 2/411 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPGFE  +K +YVCKL+KALYGLKQA + W+
Sbjct: 1028 RGWSLRQLDVQNAFLHGFLEE--EVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWY 1085

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L   L  LGF ASKADTSLFF N                   S+ +    ++K L   
Sbjct: 1086 SRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKE 1145

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV  + +GI+LTQ+KY  DLL +V+M++ K              +
Sbjct: 1146 FALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLY 1205

Query: 541  EGNCFP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG+     D   YR ++G LQYLT+TRP+I Y+VNK+ Q++  P   HW AVKR+LRY++
Sbjct: 1206 EGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLN 1265

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
              T  GL + K+   ++ G+SD+DWA   DDRKST G  +F+G NL+ WS+RKQPTVSRS
Sbjct: 1266 QCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1325

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY+++A    E++W+++L  EL I       IW DNL A ++S+NPV  ARTKH+E
Sbjct: 1326 STEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIE 1385

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +D HF+RE+V QK + +  +P+ DQ+AD  TK L+ +     ++ L++T L
Sbjct: 1386 VDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSVRLLEHFKHNLNLTRL 1436


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  382 bits (981), Expect = e-103
 Identities = 190/416 (45%), Positives = 271/416 (65%)
 Frame = +1

Query: 4    NCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFD 183
            N  + Q+D+ NAFL+G+L++   ++M QPPGF       +VCKLNKALYGLKQA + W++
Sbjct: 813  NWSVHQLDVQNAFLHGDLEE--HVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYN 870

Query: 184  KLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYF 363
            KL + L   GF AS+AD+S+F  +S                TGSS+  +   I  L S F
Sbjct: 871  KLSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSF 930

Query: 364  SLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFE 543
            +L+DLG +++FLGIEV        L+Q KY QDLL++  M D+K               +
Sbjct: 931  ALRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLD 990

Query: 544  GNCFPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTT 723
            G  F D  LYR  +G LQYLT+TRP+I++AVNK  Q+M  P  +HW AVKR+LRY+ GT 
Sbjct: 991  GEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTL 1050

Query: 724  DYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAE 903
             YG+Q+ ++  L I G++D+DWAS PDDR+ST G+ IF+G NL+ WSS KQ  VSRSSAE
Sbjct: 1051 SYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAE 1110

Query: 904  AEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDL 1083
            +EYR+LA+A +E++W++ +  EL +  S PP++W DN SA  +++NPV  ARTKH+E+DL
Sbjct: 1111 SEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDL 1170

Query: 1084 HFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGD 1251
            HFIR+ V +K +++ ++P+ +Q+AD  TK ++   F   R KL V   S + L+GD
Sbjct: 1171 HFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVVP-SPVSLRGD 1225


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  379 bits (974), Expect = e-102
 Identities = 187/405 (46%), Positives = 266/405 (65%), Gaps = 2/405 (0%)
 Frame = +1

Query: 19   QIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLRSV 198
            Q+D+ NAFL+G L++  E+YM QPPG+E   K +YVCKL+KALYGLKQA + W+ +L + 
Sbjct: 911  QLDVQNAFLHGVLEE--EVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNK 968

Query: 199  LQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLKDL 378
            L SLGF ASKADTSLFF N  +                S+++  + ++  L   F+LKDL
Sbjct: 969  LLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDL 1028

Query: 379  GALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNCF- 555
            G L++FLGIEVN ++DGIILTQ KY  DLL KV M+D K               EG+   
Sbjct: 1029 GDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLG 1088

Query: 556  -PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTDYG 732
              D   YR ++G LQYLT+TRP+I ++VNK+ Q++  P   HW AVKR+LRYI   T+ G
Sbjct: 1089 EKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLG 1148

Query: 733  LQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEAEY 912
            L + +++  +++ FSD+DWA   DDRKST G  +F+G NL+ WS+RKQPTVSRSS E+EY
Sbjct: 1149 LHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEY 1208

Query: 913  RSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLHFI 1092
            ++LA A  E++W++ L  E+ I       +W DNL A ++S+NP+  ARTKH+E+D HF+
Sbjct: 1209 KALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFV 1268

Query: 1093 REKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            R++V +K + + ++P  DQ+AD  TKPL+ +     +  L++T L
Sbjct: 1269 RDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNLTRL 1313


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  379 bits (973), Expect = e-102
 Identities = 186/409 (45%), Positives = 267/409 (65%), Gaps = 2/409 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  +++M QPPG+E   K  YVCKL+KALYGLKQA + W+
Sbjct: 1024 RGWTLRQLDVQNAFLHGVLEE--DVFMRQPPGYE--QKDGYVCKLDKALYGLKQAPRAWY 1079

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L + L  LGF +SK+DTSLFF +                   SS +  + ++K+L   
Sbjct: 1080 SRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQE 1139

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV  + +GI+LTQ+KY  D+L +V+M+D K               
Sbjct: 1140 FALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAH 1199

Query: 541  EGNCF--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EGN F   D   YR ++G LQYLT+TRP+++++VNK+ QY+  P   HW A KR+LRY+ 
Sbjct: 1200 EGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLK 1259

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
             T   GL++ K+N L+++ FSD+DWA   DDR ST G  +F+G NL+ WS+RKQ TVSRS
Sbjct: 1260 HTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRS 1319

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY++LA    E++W+++L HEL I       +W DN+ A +M++NPV  ARTKH+E
Sbjct: 1320 STEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIE 1379

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVT 1221
            +D HF+RE+V +K + V +I  +DQ+AD  TK L+ +     RN L++T
Sbjct: 1380 VDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLT 1428


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  378 bits (970), Expect = e-102
 Identities = 189/411 (45%), Positives = 263/411 (63%), Gaps = 2/411 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPG+E +   DYVCKL+KALYGLKQA + W+
Sbjct: 848  RGWTLRQLDVQNAFLHGILEE--EVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWY 905

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             KL   LQ LGF  SKADTSLFF N                   S  + +  ++K L   
Sbjct: 906  AKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKD 965

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEVN    GI+LTQ+KY+ DLL +V MTD K               
Sbjct: 966  FALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLH 1025

Query: 541  EGNCFP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG+     D   YR V+G LQYLT+TRP+I + VNK+ Q++  P   HW A+KR+LRY+ 
Sbjct: 1026 EGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLK 1085

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
              T  GL++ K+  ++++G+SD+DWA + DDR+ST G  +F+G NL+ W+++KQ TV RS
Sbjct: 1086 QCTKLGLKISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATVPRS 1145

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S E+EY++LA A  E++W+++L  EL +P      +W DNL A ++SSNPV  ARTKH+E
Sbjct: 1146 STESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHARTKHIE 1205

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +D HF+RE++Q+K + V  IP  DQ+AD  TK L+ +     +  L+V  L
Sbjct: 1206 VDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALSARQLENFKYNLNVGRL 1256


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  377 bits (969), Expect = e-102
 Identities = 187/411 (45%), Positives = 264/411 (64%), Gaps = 2/411 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ N FL+G L++  E+YM QPPGFE  +K DYVCKLNKALYGLKQA + W+
Sbjct: 1040 RGWSLRQLDVQNDFLHGFLEE--EVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWY 1097

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L   L  LGF ASKADTSLFF N                   S+ +    ++K L   
Sbjct: 1098 SRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKE 1157

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV  + +G+ILTQ+KY  D+L +V+M++ K              +
Sbjct: 1158 FTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLY 1217

Query: 541  EGNCFP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG+     D   YR ++G LQYLT+TRP+I Y+VNK+ Q++  P  SHW AVKR+LRY++
Sbjct: 1218 EGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLN 1277

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
              T  GL + K+   ++ G+SD+D A   DDRKST G  +F+G NL+ WS+RKQPTVSRS
Sbjct: 1278 QCTSLGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRS 1337

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY+++A    E++W++++  EL I       IW DNL A ++S+NPV  A+TKH+ 
Sbjct: 1338 STEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIH 1397

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +D HF+RE+V QK + +  +P+ DQ+AD  TK L+ +     ++ L++T L
Sbjct: 1398 VDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNLTRL 1448


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  377 bits (968), Expect = e-102
 Identities = 186/409 (45%), Positives = 267/409 (65%), Gaps = 2/409 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  +++M QPPG+E   K  YVCKL+KALYGLKQA + W+
Sbjct: 624  RGWTLRQLDVQNAFLHGVLEE--DVFMRQPPGYE--QKDGYVCKLDKALYGLKQAPRAWY 679

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L + L  LGF +SK+DTSLFF +                   SS    + ++K+L   
Sbjct: 680  SRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDIIVASSSIVATNALLKNLNQE 739

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV  + DGI+LTQ+KY  D+L +V+M+D K               
Sbjct: 740  FALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAH 799

Query: 541  EGNCF--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EGN     D   YR ++G LQYLT+TRP+++++VNK+ QY+      HW A KR+LRY+ 
Sbjct: 800  EGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAAKRILRYLK 859

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
             T   GL++ K+N L+++ FSD+DWA   DDR+ST G  +F+G NL+ WS+RKQ TVSRS
Sbjct: 860  HTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRS 919

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY++LA A  E++W+++L HEL I +     +W DN+ A +M++NPV  ARTKH+E
Sbjct: 920  STEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIE 979

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVT 1221
            +D HF+RE+V +K + V +I  +DQ+AD  TK L+ +     RN L++T
Sbjct: 980  VDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLT 1028


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score =  376 bits (966), Expect = e-101
 Identities = 189/413 (45%), Positives = 264/413 (63%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            IRQ+D+ NAFLNGEL++  ++YM QPPG+        VC+L KALYGLKQA + WF +L 
Sbjct: 786  IRQLDVHNAFLNGELEE--QVYMSQPPGYLDTTFPTKVCRLKKALYGLKQAPRAWFQRLS 843

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
            S L   GFS S+ D+S+F     ++              G S+  I  +I  L S F+L+
Sbjct: 844  SALIQWGFSNSRTDSSMFLHFGESTTLIVLVYVDDIIIXGCSSTQISSLIXKLDSIFTLR 903

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG L +FLGIEV+Y +  + L+Q KY+ DLL +  M D K             +F+G+ 
Sbjct: 904  DLGQLSYFLGIEVSYHEGSMNLSQTKYVSDLLHRTEMFDTKPAKTPGVVGKNLSKFDGDP 963

Query: 553  FPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTDYG 732
              +   YR V+G LQYLTITRP+I +AVNK  Q+MQ P  +HW ++KR+LRY+ GT   G
Sbjct: 964  MDEVTQYRSVVGALQYLTITRPDIAFAVNKACQFMQQPTSAHWLSIKRILRYLKGTMQDG 1023

Query: 733  LQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEAEY 912
            L L  + +L I  FSD++W + PDDR+S+SG+ +++G NL+ WSS KQ  VSRSSAE+EY
Sbjct: 1024 LLLSPSTNLTIEXFSDANWGAQPDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSSAESEY 1083

Query: 913  RSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLHFI 1092
            R LA A  E++W+++L  EL +P+   P++W DN+SA  M+ NPV  ARTKH+EIDLHFI
Sbjct: 1084 RGLALATAEIIWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFI 1143

Query: 1093 REKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGD 1251
            R++V +  I +H +P +DQ AD LTK LT   F  +++ L + S     L+GD
Sbjct: 1144 RDQVIRGKIQLHFVPTEDQPADLLTKHLTSSRFLSLKSHLCIAS-RPFHLRGD 1195


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  374 bits (959), Expect = e-101
 Identities = 185/407 (45%), Positives = 261/407 (64%), Gaps = 2/407 (0%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            +RQ+D+ N FL G L++  E+YM QPPGFE  +K DYVCKLNKALYGLKQA + W+ +L 
Sbjct: 1044 LRQLDVQNDFLRGFLEE--EVYMQQPPGFESSSKRDYVCKLNKALYGLKQAPRAWYSRLS 1101

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
              L  LGF ASKADTSLFF N                   S+ +    ++K L   F+LK
Sbjct: 1102 KKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLK 1161

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG LH+FLGIEV  + +G+ILTQ+KY  D+L +V+M++                +EG+ 
Sbjct: 1162 DLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTLYEGSP 1221

Query: 553  FP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTD 726
                D   YR ++G LQYLT+TRP+I Y+VNK+ Q++  P  SHW AVKR+LRY++  T 
Sbjct: 1222 LGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTS 1281

Query: 727  YGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEA 906
             GL + K+   ++ G+SD+D A   DDRKST G  +F+G NL+ WS+RKQPTVSRSS EA
Sbjct: 1282 PGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEA 1341

Query: 907  EYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLH 1086
            EY+++A    E++W++++  EL I       IW DNL A ++S+NPV  A+TKH+ +D H
Sbjct: 1342 EYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYH 1401

Query: 1087 FIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            F+RE+V QK + +  +P+ DQ+AD  TK L+ +     ++ L++T L
Sbjct: 1402 FVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNLTRL 1448


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  373 bits (957), Expect = e-100
 Identities = 182/408 (44%), Positives = 264/408 (64%), Gaps = 2/408 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPG+E ++  +YVCKL+KALYGLKQA + W+
Sbjct: 407  RGWSLRQLDVKNAFLHGVLEE--EVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWY 464

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L + L  LGF  SKADTSLFF                     S  +    +++ L   
Sbjct: 465  SRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKD 524

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV+ +KDG++L+Q+KY  DLL +V M + K               
Sbjct: 525  FALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVN 584

Query: 541  EGNCF--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG      D   YR V+G LQYLT+TRP+I++++NK+ Q++  P  +HW AVKR+LRY+ 
Sbjct: 585  EGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVK 644

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
             T D GL+  +N  L+++GFSD+DWA  PDDR+ST G  +F+G NL+ WS+RKQ TVSRS
Sbjct: 645  YTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRS 704

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY++LA A  E++W+++L  EL +       +W DNL A ++S+NP+  ARTKH+E
Sbjct: 705  STEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIE 764

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHV 1218
            +D HF+RE+V +K + + +I  +DQ+AD  TK +  +     +N L++
Sbjct: 765  VDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  372 bits (955), Expect = e-100
 Identities = 182/408 (44%), Positives = 264/408 (64%), Gaps = 2/408 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPG+E ++  +YVCKL+KALYGLKQA + W+
Sbjct: 985  RGWSLRQLDVKNAFLHGVLEE--EVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWY 1042

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L + L  LGF  SKADTSLFF                     S  +    +++ L   
Sbjct: 1043 SRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKD 1102

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEV+ +KDG++L+Q+KY  DLL +V M + K               
Sbjct: 1103 FALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVN 1162

Query: 541  EGNCF--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG      D   YR V+G LQYLT+TRP+I++++NK+ Q++  P  +HW AVKR+LRY+ 
Sbjct: 1163 EGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVK 1222

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
             T D GL+  +N  L+++GFSD+DWA  PDDR+ST G  +F+G NL+ WS+RKQ TVSRS
Sbjct: 1223 YTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRS 1282

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S EAEY++LA A  E++W+++L  EL +       +W DNL A ++S+NP+  ARTKH+E
Sbjct: 1283 SIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIE 1342

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHV 1218
            +D HF+RE+V +K + + +I  +DQ+AD  TK +  +     +N L++
Sbjct: 1343 VDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 1390


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  371 bits (952), Expect = e-100
 Identities = 186/413 (45%), Positives = 263/413 (63%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            IRQ+D+ NAFLNGEL++  ++YM QPPG+      + VC+L KALYGLKQA + WF +L 
Sbjct: 992  IRQLDVHNAFLNGELEE--QVYMSQPPGYFDPQFPNRVCRLKKALYGLKQAPRAWFQRLS 1049

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
            S L   GFS S+ D+S+F      +             TGSS+  I  +I  L S F+L+
Sbjct: 1050 SALLQWGFSMSRTDSSMFLHFGKATTLIVLVYVDDILVTGSSSTQISSLIAKLDSVFALR 1109

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG L FFLGIEV+Y +  + L+Q KYI DLL +  + D K             +F+G+ 
Sbjct: 1110 DLGQLSFFLGIEVSYNEGSMTLSQTKYISDLLHRTELFDTKPANTPGAVGKNLSKFDGDP 1169

Query: 553  FPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTDYG 732
              D   YR V+G LQY+T+TRP+I +AVNK  Q+MQ P  +HW +VKR+LRY+ GT   G
Sbjct: 1170 MTDVTHYRSVVGALQYVTLTRPDIAFAVNKACQFMQQPTTAHWLSVKRILRYLRGTMQDG 1229

Query: 733  LQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEAEY 912
            L    +++L I GF+D+DW +  DDR+S+SG+ +++G NL+ WSS KQ  VSRSSAE+EY
Sbjct: 1230 LLFSPSSNLTIEGFTDADWGAHLDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSSAESEY 1289

Query: 913  RSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLHFI 1092
            R L  A  E++W+++L  EL +P+   P++W DN+SA  M+ NPV  ARTKH+EIDLHFI
Sbjct: 1290 RGLVFATAEIVWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFI 1349

Query: 1093 REKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGD 1251
            R++V +  I +  +P ++Q  D LTK LT   F  ++++L +       L+GD
Sbjct: 1350 RDQVMRGKIQLQFVPTEEQPVDLLTKHLTSSRFLSLKSQLCIAP-RPFHLRGD 1401


>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
          Length = 1282

 Score =  370 bits (950), Expect = e-100
 Identities = 186/413 (45%), Positives = 263/413 (63%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            IR +D+ NAFLNGEL++  ++YM  PPG+        VC+L KA+YGLKQA + WF +L 
Sbjct: 860  IRILDVHNAFLNGELEE--QVYMSXPPGYLDTTFXTKVCRLKKAIYGLKQAPRAWFQRLS 917

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
            S L   GFS S+ D+S+F     ++              G S+  I  +I  L S F+L+
Sbjct: 918  SALIQWGFSNSRTDSSMFLHFGESTTLIVLVYVDDIIIXGCSSTQISSLIAKLDSIFALR 977

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DL  L +FLGIEV+Y +  + L+Q KY+ DLL +  M D K             +F+G+ 
Sbjct: 978  DLXQLSYFLGIEVSYHEGSMNLSQTKYVSDLLHRTEMFDTKPAKTPGAVGKNLSKFDGDP 1037

Query: 553  FPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTDYG 732
              +   YR V+G LQYLTITRP+I +AVNK  Q+MQ P  +HW +VKR+LRY+ GT   G
Sbjct: 1038 MDEVTQYRSVVGALQYLTITRPDIAFAVNKTCQFMQQPTSAHWLSVKRILRYLKGTMQDG 1097

Query: 733  LQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEAEY 912
            L L  + +L I GFSD+DW + PDDR+S+SG+ +++G NL+ WSS KQ  VSRSSA++EY
Sbjct: 1098 LLLSPSTNLTIEGFSDADWGAQPDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSSAKSEY 1157

Query: 913  RSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLHFI 1092
            R+LA A  E++W+++L  EL +P+   P++W DN+SA  M+ NPV  ARTKH+EIDLHFI
Sbjct: 1158 RALALATAEIIWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFI 1217

Query: 1093 REKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGD 1251
            R++V +  I +H +P +DQ AD LTK LT   F  ++++L +       L+GD
Sbjct: 1218 RDQVIRGKIQLHFVPTEDQPADLLTKHLTSSRFLSLKSQLCIAP-RPFHLRGD 1269


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  370 bits (949), Expect = e-99
 Identities = 188/413 (45%), Positives = 265/413 (64%), Gaps = 11/413 (2%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            +RQ+D+ NAFL+G LD+  E+YM QPPGFE   +  ++CKL+KALYGLKQA + W+ +L 
Sbjct: 488  LRQLDVQNAFLHGYLDE--EVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYSRLS 545

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
              LQ LGFS+SKADTSLFF N                   SS+  ++ ++K L   F+LK
Sbjct: 546  KKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFALK 605

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG LH+FLGIEV      ++L+Q++Y  +LL +V+MT  K                G+ 
Sbjct: 606  DLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDE 665

Query: 553  F--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTD 726
                D   YR ++G LQYLT+TRP+I+Y+VNK+ Q++Q P  +HW AVKR+LRY+ GT D
Sbjct: 666  LGPSDVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGTLD 725

Query: 727  YGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHC---------IFVGKNLICWSSRKQP 879
             GL++ K++  +++ FSD+DWA   DDR+ST G           +F G NLI WS+RKQ 
Sbjct: 726  LGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRSTGGFAVFFGDNLISWSARKQA 785

Query: 880  TVSRSSAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQAR 1059
            TVSRSS EAEY++LA A  E++W++ L  EL I       +W DNL A +M++NPV  AR
Sbjct: 786  TVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHAR 845

Query: 1060 TKHVEIDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHV 1218
            TKH+E+D HF+RE+V QK + +H + +QDQ+AD  TKP++ Q     R+ L++
Sbjct: 846  TKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIGFRHNLNL 898


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  369 bits (948), Expect = 1e-99
 Identities = 185/404 (45%), Positives = 257/404 (63%), Gaps = 2/404 (0%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            +RQ+D+ NAFL+G L++  E+YM QPPGFE   K  +VCKL+KALYGLKQA + WF +L 
Sbjct: 1049 LRQLDVQNAFLHGYLEE--EVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLS 1106

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
              L  LGF  SK DTSLFF N                   SS +    +++ L   F+LK
Sbjct: 1107 KKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALK 1166

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG LH+FLGIEV+ +++GI+L Q KY  DLL KV M D K               EG+ 
Sbjct: 1167 DLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSL 1226

Query: 553  F--PDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTD 726
                D   YR V+G LQYLT+TRP+I ++VNK+ Q++  P   HW AVKR+LRY+   T 
Sbjct: 1227 LGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTR 1286

Query: 727  YGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEA 906
             GL++ K+   +++GFSD+DWA   DDR+ST G  IF+G NL+ W++RKQ TVSRSS E+
Sbjct: 1287 LGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTES 1346

Query: 907  EYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLH 1086
            EY+++A A  E++W+++L  EL+I       IW DNL A ++S+NPV  ARTKH+E+D H
Sbjct: 1347 EYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYH 1406

Query: 1087 FIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHV 1218
            F+RE+V QK + +  +   DQ+AD  TKPL+ +     ++ L++
Sbjct: 1407 FVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNL 1450


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  369 bits (948), Expect = 1e-99
 Identities = 190/413 (46%), Positives = 263/413 (63%)
 Frame = +1

Query: 13   IRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWFDKLR 192
            +RQ+D++NAFLNG+L++  E++M QP GF       YVCKL+KALYGLKQA + WF KLR
Sbjct: 963  VRQLDVENAFLNGDLEE--EVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLR 1020

Query: 193  SVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSYFSLK 372
              L   GF +S+ADTSLF  ++ T              TGS+   +   I  L + F+L+
Sbjct: 1021 IALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRTKFALR 1080

Query: 373  DLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRFEGNC 552
            DLG L +FLGI+   +   + L Q KYI DLL +  M  +K             + +G  
Sbjct: 1081 DLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMS 1140

Query: 553  FPDGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYISGTTDYG 732
              D   YR+ +G LQY+T+TRP+I +AVNK  Q+M  P D HW AVKR+LRY+ GT   G
Sbjct: 1141 LSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLG 1200

Query: 733  LQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRSSAEAEY 912
            L       + + G+SD+DWAS PDDR+STSG+C+F+G NLI WSS KQ  VS+SSAE+EY
Sbjct: 1201 LHFQPAASMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEY 1260

Query: 913  RSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVEIDLHFI 1092
            R L +   E++W++SL  EL +P S PP++W DN SA  +++NPV  +R+KH+E+DLHFI
Sbjct: 1261 RGLVSLTAELVWIQSLLQELCLPTS-PPILWCDNQSAAHLAANPVFHSRSKHIELDLHFI 1319

Query: 1093 REKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSLSSLELKGD 1251
            REKV ++ + + ++P+ DQ+AD  TK L    F  +R+KL VT    L L+GD
Sbjct: 1320 REKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVT-YPPLSLRGD 1371


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  368 bits (945), Expect = 3e-99
 Identities = 187/411 (45%), Positives = 257/411 (62%), Gaps = 2/411 (0%)
 Frame = +1

Query: 1    RNCFIRQIDIDNAFLNGELDQGTEIYMHQPPGFEIRNKSDYVCKLNKALYGLKQASKTWF 180
            R   +RQ+D+ NAFL+G L++  E+YM QPPG+E  +   YVCKL+KALYGLKQA + W+
Sbjct: 1039 RGWCMRQLDVQNAFLHGFLEE--EVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWY 1096

Query: 181  DKLRSVLQSLGFSASKADTSLFFRNSPTSXXXXXXXXXXXXXTGSSNEDIDKIIKSLCSY 360
             +L   L  LGF  SK DTSLFF N                 T S  E +  +++ L   
Sbjct: 1097 SRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKE 1156

Query: 361  FSLKDLGALHFFLGIEVNYMKDGIILTQKKYIQDLLAKVHMTDAKGXXXXXXXXXXXXRF 540
            F+LKDLG LH+FLGIEVN + D IILTQ KY  DLL +V+M D K               
Sbjct: 1157 FALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAH 1216

Query: 541  EGNCFP--DGLLYRQVIGGLQYLTITRPEITYAVNKLSQYMQNPLDSHWKAVKRLLRYIS 714
            EG+     D   YR V+G LQYLT+TRP+I + VNK+ Q++  P   HW AVKR+LRY+ 
Sbjct: 1217 EGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLK 1276

Query: 715  GTTDYGLQLFKNNHLVITGFSDSDWASDPDDRKSTSGHCIFVGKNLICWSSRKQPTVSRS 894
              T  GL+L K+  ++++ +SD+DWA   DDR+ST G  +F+G NL+ W +RKQ TVSRS
Sbjct: 1277 QCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRS 1336

Query: 895  SAEAEYRSLATAMTEVLWLKSLFHELQIPLSYPPVIWVDNLSAVFMSSNPVVQARTKHVE 1074
            S E+EY++LA A  E++W+++L  ELQ+       +W DNL A ++SSNPV  ARTKH+E
Sbjct: 1337 STESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIE 1396

Query: 1075 IDLHFIREKVQQKSILVHHIPAQDQIADCLTKPLTGQFFARMRNKLHVTSL 1227
            +D HF+RE+V QK + +  +P  DQ+AD  TK L  +     ++ L++  L
Sbjct: 1397 VDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLNLGRL 1447