BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00023543
         (490 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]         164   1e-38
gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]         163   2e-38
gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]         162   3e-38
gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]         162   3e-38
gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]         162   4e-38
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   161   9e-38
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...   161   9e-38
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...   119   6e-28

>gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  164 bits (415), Expect = 1e-38
 Identities = 77/142 (54%), Positives = 94/142 (66%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT Q VLP R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + 
Sbjct: 571 GATPQGVLPMRPVCFGATVLDNILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYE 630

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I +RH +GGF
Sbjct: 631 TPPRRWVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGF 690

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P+P+  YY+ENTF VG
Sbjct: 691 PILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  163 bits (413), Expect = 2e-38
 Identities = 76/142 (53%), Positives = 94/142 (66%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT Q VLP R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + 
Sbjct: 571 GATPQGVLPMRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYE 630

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP+I +RH +GGF
Sbjct: 631 TPPRRWVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGF 690

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P+P+  YY+ENTF VG
Sbjct: 691 PILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  162 bits (411), Expect = 3e-38
 Identities = 78/142 (54%), Positives = 92/142 (64%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT Q VLP R + F A +L  IL  PCFV+  TF  ++P+    +T  L        + 
Sbjct: 571 GATPQGVLPLRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYE 630

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I YRH +GGF
Sbjct: 631 TPPRRWVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGF 690

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P PA  YY+ENTF VG
Sbjct: 691 PILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  162 bits (411), Expect = 3e-38
 Identities = 78/142 (54%), Positives = 92/142 (64%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT Q VLP R + F A +L  IL  PCFV+  TF  ++P+    +T  L        + 
Sbjct: 571 GATPQGVLPLRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYE 630

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I YRH +GGF
Sbjct: 631 TPPRRWVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGF 690

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P PA  YY+ENTF VG
Sbjct: 691 PILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  162 bits (410), Expect = 4e-38
 Identities = 75/142 (52%), Positives = 94/142 (66%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT + VLP R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + 
Sbjct: 571 GATPRGVLPMRPVCFGATVLDNILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYE 630

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L +RDVSLWVEP+I +RH +GGF
Sbjct: 631 TPPRRWVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGF 690

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P+P+  YY+ENTF VG
Sbjct: 691 PILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  161 bits (407), Expect = 9e-38
 Identities = 73/142 (51%), Positives = 92/142 (64%)
 Frame = -2

Query: 486 GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
           GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + 
Sbjct: 94  GATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYV 153

Query: 306 TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
           TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP + +RH +GGF
Sbjct: 154 TPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGF 213

Query: 126 PLTIPDPSPAPKYYFENTFVVG 61
           P+  P P+PA  YY+ENTF VG
Sbjct: 214 PILKPTPAPAIDYYYENTFPVG 235


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score =  161 bits (407), Expect = 9e-38
 Identities = 73/142 (51%), Positives = 92/142 (64%)
 Frame = -2

Query: 486  GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
            GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + 
Sbjct: 848  GATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYV 907

Query: 306  TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 127
            TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP + +RH +GGF
Sbjct: 908  TPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGF 967

Query: 126  PLTIPDPSPAPKYYFENTFVVG 61
            P+  P P+PA  YY+ENTF VG
Sbjct: 968  PILKPTPAPAIDYYYENTFPVG 989


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score =  119 bits (298), Expect(2) = 6e-28
 Identities = 55/109 (50%), Positives = 68/109 (62%)
 Frame = -2

Query: 486  GATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFT 307
            GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + 
Sbjct: 725  GATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIASYE 784

Query: 306  TPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 160
            TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP
Sbjct: 785  TPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833



 Score = 30.4 bits (67), Expect(2) = 6e-28
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 47  FLGISPGKYPWPR 9
           FLGIS G+YPWPR
Sbjct: 874 FLGISQGEYPWPR 886