BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00022069
         (1242 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                          616   e-174
gb|AFB73911.1| polyprotein [Citrus sinensis]                          604   e-170
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  563   e-158
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              560   e-157
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              560   e-157
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              558   e-156
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              558   e-156
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             557   e-156
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        278   3e-72
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     278   4e-72
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   278   4e-72
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     277   7e-72
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                275   4e-71
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   273   1e-70
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   268   3e-69
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   268   3e-69
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   268   3e-69
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   266   1e-68
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               266   1e-68
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   264   5e-68

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  616 bits (1589), Expect = e-174
 Identities = 304/415 (73%), Positives = 351/415 (84%), Gaps = 4/415 (0%)
 Frame = -3

Query: 1240 GYKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQ 1061
            G+ IE  ERAELLLQSLPDSYDQLIINLTNN   D LVFD++AA++L EESRR+NKE+RQ
Sbjct: 131  GHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVLNEESRRKNKENRQ 190

Query: 1060 GSSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS----K 893
             SS QAEAL+V            SQNHGRSKSRSKKN+KCYNCGK+GH KK+CWS    +
Sbjct: 191  ASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGKKGHVKKECWSNQKRR 250

Query: 892  KSGDPESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFH 713
            +  +PESSNAQG +ASTS++GE+LY EAT  +EGRK  SDVWL+DSGATWHMTSRREWFH
Sbjct: 251  EGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310

Query: 712  TYEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDV 533
            TYEPISGGSV+MGNDHAL+IAGIGTIKIKMFDGT+RTI+EVRHV GL+KNLLSLGQ+D  
Sbjct: 311  TYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSH 370

Query: 532  GCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHH 353
            GCKT +E+GIMKIVKGA+V+MKAEK+ ANL+MLKGET+Q  EA   VA + EEST MWH 
Sbjct: 371  GCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQ--EADACVASNGEESTMMWHL 428

Query: 352  KLGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSD 173
            KLGHM EQGLKILSE+KL PGL  VSLPFCEHCVTSKQH+LKF RS ++SK IL+LIHSD
Sbjct: 429  KLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSD 488

Query: 172  VWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
            VW++P  S+GGA+Y V+FIDDYSRRCWVYPIK+K DVF VFK YKA +ELESG +
Sbjct: 489  VWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKK 543


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  604 bits (1558), Expect = e-170
 Identities = 299/415 (72%), Positives = 347/415 (83%), Gaps = 4/415 (0%)
 Frame = -3

Query: 1240 GYKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQ 1061
            G+ IE  ERAELLLQSLPDSYDQLIINLTNN   + LVFD++AA++L EESRR+NKE+RQ
Sbjct: 131  GHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAASVLNEESRRKNKENRQ 190

Query: 1060 GSSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS----K 893
             SS QAEAL+V            SQN GRSK R KKN+KCYNCGK+GH KK+CWS    +
Sbjct: 191  ASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGKKGHVKKECWSNQKRR 250

Query: 892  KSGDPESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFH 713
            +  +PE+SNAQG +ASTS++GE+LY EATT +EGRK  SDVWL+DSGATWHMTSRREWFH
Sbjct: 251  EGKEPETSNAQGCVASTSDDGEILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFH 310

Query: 712  TYEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDV 533
            TYEPISGGSV+MGNDHAL+IAGIGTIKIKMFDGT+RTI EVRHV GL+KNLLSLGQ+D  
Sbjct: 311  TYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSH 370

Query: 532  GCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHH 353
            G KT +E+GIMKIVKGA+V+MK EK+ ANL+MLKGET+Q  EA   VA + EEST MWH 
Sbjct: 371  GYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQ--EADACVASNGEESTMMWHL 428

Query: 352  KLGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSD 173
            KLGHM EQGLKILSE+KLLPGL  VSLPFCEHCVTSKQH+LKF RS ++SK IL+LIHSD
Sbjct: 429  KLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSD 488

Query: 172  VWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
            VW++P  S+GGA+Y V+FIDDYSRRCWVYPIK+K DVF VFK YKA +ELESG +
Sbjct: 489  VWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKK 543


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  563 bits (1451), Expect = e-158
 Identities = 275/407 (67%), Positives = 336/407 (82%), Gaps = 3/407 (0%)
 Frame = -3

Query: 1219 ERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAE 1040
            ERAE+LLQSLPDSYDQL+IN+TNN + D L F+++A AILEEESRR+NKEDRQ SS Q E
Sbjct: 138  ERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQME 197

Query: 1039 ALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS-KKSGDP--ESS 869
            AL V            SQNHGRS SR K N+KCYNCGKRGH KKDCWS KKSG+   E+S
Sbjct: 198  ALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNKKSGEKSSEAS 257

Query: 868  NAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTYEPISGG 689
             +QG +ASTS++GEVLY EA  + +G+   +DVW++DSGATWHMT RR+WF TYEP+S G
Sbjct: 258  TSQGCVASTSDDGEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEG 317

Query: 688  SVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGCKTRIED 509
            +VFMGNDHAL+I GIGT+KIKM+DGT+RT+QEVRHVK L KNLLS+GQLDD+G K  I+ 
Sbjct: 318  NVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQG 377

Query: 508  GIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKLGHMLEQ 329
            GI+K+VKG++VVMKA+K+AANLYML G+T Q  +A VAV GS EE+T MWH +LGHM E+
Sbjct: 378  GILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVAV-GSQEETTMMWHRRLGHMSER 436

Query: 328  GLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVWQAPLSS 149
            GLK+L+E+ L+PGL  VSLPFCEHCV SKQH+LKF +ST++SK IL+LIHSDVW++P  S
Sbjct: 437  GLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEVS 496

Query: 148  LGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
            +GGA+YFVSFIDDYSRR WVYPIK+K  V+SVFK +KAQ+ELE+G R
Sbjct: 497  IGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKR 543


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  560 bits (1443), Expect = e-157
 Identities = 275/413 (66%), Positives = 336/413 (81%), Gaps = 3/413 (0%)
 Frame = -3

Query: 1237 YKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQG 1058
            +KI   ERAELLLQSLPDSYDQLIIN+TNN ++D L FD++A AILEEESRR+NKE+R  
Sbjct: 132  FKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSE 191

Query: 1057 SSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS-KKSGD 881
            SS QAEAL +            SQNHGRSKSR KKNIKCY CG +GH KK+CW+ KK+G+
Sbjct: 192  SSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGE 251

Query: 880  P--ESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTY 707
               E+S +QG +ASTS++GE+LY EA T+++G +  +DVW++DSGATWHMT  R+WF +Y
Sbjct: 252  KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSY 311

Query: 706  EPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGC 527
            EPIS GSV+MGNDHAL+IAG+GTI++KM DGTVR IQ VRHVKGL+KNLLS+GQLDD+GC
Sbjct: 312  EPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGC 371

Query: 526  KTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKL 347
            K   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A VA A S EE+T MWH +L
Sbjct: 372  KIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA-AASQEETTMMWHQRL 430

Query: 346  GHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW 167
            GHM E+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF R T++SK IL+LIHSDVW
Sbjct: 431  GHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490

Query: 166  QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
            ++P  SLGGARYFVSFIDDYSRR WVYPIK+K DVF VFK +KAQIELE+G +
Sbjct: 491  ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKK 543


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  560 bits (1442), Expect = e-157
 Identities = 274/413 (66%), Positives = 336/413 (81%), Gaps = 3/413 (0%)
 Frame = -3

Query: 1237 YKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQG 1058
            +KI   ERAELLLQSLPDSYDQLIIN+TNN ++D L FD++A AILEEESRR+NKE+R  
Sbjct: 132  FKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSE 191

Query: 1057 SSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS-KKSGD 881
            SS QAEAL +            SQNHGRSKSR K NIKCY CG +GH KK+CW+ KK+G+
Sbjct: 192  SSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKGHVKKECWNNKKNGE 251

Query: 880  P--ESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTY 707
               E++ +QG +ASTS++GE+LY EA T++EG +  +DVW++DSGATWHMT  R+WF++Y
Sbjct: 252  KNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFYSY 311

Query: 706  EPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGC 527
            EPIS GSV+MGNDHAL+IAG+GTI++KM DGTVR IQ VRHVKGL+KNLLS+GQLDD+GC
Sbjct: 312  EPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGC 371

Query: 526  KTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKL 347
            K   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A VA A S EE+T MWH +L
Sbjct: 372  KIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA-AASQEETTMMWHQRL 430

Query: 346  GHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW 167
            GHM E+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF R T++SK IL+LIHSDVW
Sbjct: 431  GHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490

Query: 166  QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
            ++P  SLGGARYFVSFIDDYSRR WVYPIK+K DVF VFK +KAQIELE+G +
Sbjct: 491  ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKK 543


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  558 bits (1439), Expect = e-156
 Identities = 274/410 (66%), Positives = 335/410 (81%), Gaps = 3/410 (0%)
 Frame = -3

Query: 1237 YKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQG 1058
            +KI   ERAELLLQSLPDSYDQLIIN+TNN ++D L FD++A AILEEESRR+NKE+R  
Sbjct: 132  FKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSE 191

Query: 1057 SSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS-KKSGD 881
            SS QAEAL +            SQNHGRSKSR KKNIKCY CG +GH KK+CW+ KK+G+
Sbjct: 192  SSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGE 251

Query: 880  P--ESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTY 707
               E+S +QG +ASTS++GE+LY EA T+++G +  +DVW++DSGATWHMT  R+WF++Y
Sbjct: 252  KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSY 311

Query: 706  EPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGC 527
            EPIS GSV+MGNDHAL+IAG+GTI++KM DGTVR IQ VRHVKGL+KNLLS+GQLDD+GC
Sbjct: 312  EPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGC 371

Query: 526  KTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKL 347
            K   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A VA A S EE+T MWH +L
Sbjct: 372  KIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA-AASQEETTMMWHQRL 430

Query: 346  GHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW 167
            GHM E+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF R T++SK IL+LIHSDVW
Sbjct: 431  GHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW 490

Query: 166  QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            ++P  SLGGARYFVSFIDDYSRR WVYPIK+K DVF VFK +KAQIELE+
Sbjct: 491  ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELET 540


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  558 bits (1439), Expect = e-156
 Identities = 274/410 (66%), Positives = 335/410 (81%), Gaps = 3/410 (0%)
 Frame = -3

Query: 1237 YKIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQG 1058
            +KI   ERAELLLQSLPDSYDQLIIN+TNN ++D L FD++A AILEEESRR+NKE+R  
Sbjct: 132  FKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEEESRRKNKEERSE 191

Query: 1057 SSHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWS-KKSGD 881
            SS QAEAL +            SQNHGRSKSR KKNIKCY CG +GH KK+CW+ KK+G+
Sbjct: 192  SSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGE 251

Query: 880  P--ESSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTY 707
               E+S +QG +ASTS++GE+LY EA T+++G +  +DVW++DSGATWHMT  R+WF +Y
Sbjct: 252  KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSY 311

Query: 706  EPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGC 527
            EPIS GSV+MGNDHAL+IAG+GTI++KM DGTVR IQ VRHVKGL+KNLLS+GQLDD+GC
Sbjct: 312  EPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGC 371

Query: 526  KTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKL 347
            K   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A VA A S EE+T MWH +L
Sbjct: 372  KIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA-ASSQEETTMMWHQRL 430

Query: 346  GHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW 167
            GHM E+GLK+L+E+ LL GL  V+LPFCEHCV SKQH+LKF R T++SK IL+LIHSDVW
Sbjct: 431  GHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490

Query: 166  QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            ++P  SLGGARYFVSFIDDYSRR WVYPIK+K DVF VFK +KAQIELE+
Sbjct: 491  ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELET 540


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  557 bits (1436), Expect = e-156
 Identities = 273/409 (66%), Positives = 333/409 (81%)
 Frame = -3

Query: 1234 KIEVVERAELLLQSLPDSYDQLIINLTNNVLSDYLVFDEIAAAILEEESRRRNKEDRQGS 1055
            KIE  ERAELLLQSLPDSYDQLIINLTNN+L+DYLVFD++AAA+LEEESRR+NKEDRQ +
Sbjct: 134  KIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRRKNKEDRQVN 193

Query: 1054 SHQAEALAVVXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPE 875
              QAEAL V+               GRSKS SKKN+ CYNCGK+GH KKDCW+      +
Sbjct: 194  LQQAEALTVMRGRSTERGQS--SGRGRSKS-SKKNLTCYNCGKKGHLKKDCWNLA----Q 246

Query: 874  SSNAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTYEPIS 695
            +SN QGN+ASTS++G  L  EA+   EGRK F+D+WL+DSGAT+HMTSR+EWFH YEPIS
Sbjct: 247  NSNPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDSGATYHMTSRKEWFHHYEPIS 306

Query: 694  GGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGCKTRI 515
            GGSV+  +DHAL+I GIGTIK+KM+DGTV+T+Q+VRHVKGL+KNLLS G LD+   +   
Sbjct: 307  GGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIET 366

Query: 514  EDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKLGHML 335
            + G+MKI +GA+VVMK EK+AANLYMLKGET+Q  EA  +VA  + +ST +WH KLGHM 
Sbjct: 367  QKGVMKIFQGALVVMKGEKIAANLYMLKGETLQ--EAEASVAACSPDSTLLWHQKLGHMS 424

Query: 334  EQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVWQAPL 155
            +QG+KIL EQKL+PGLTKVSLP CEHC+TSKQH+LKF  S S+ K +LEL+HSDVWQAP+
Sbjct: 425  DQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLELVHSDVWQAPV 484

Query: 154  SSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELESGDR 8
             SLGGA+YFVSFIDDYSRRCWVYPIK+K DVF+ FK +KA++EL+SG +
Sbjct: 485  PSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKK 533


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  278 bits (712), Expect = 3e-72
 Identities = 162/421 (38%), Positives = 238/421 (56%), Gaps = 15/421 (3%)
 Frame = -3

Query: 1234 KIEVVERAELLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQ 1061
            K +  + A +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +
Sbjct: 137  KYDEKDLALILLCSLPSSY----ANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPS-E 191

Query: 1060 GSSHQAEALAVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCW 899
            GS+ QAE L V            S++       GRSKSR +    C  C + GH    CW
Sbjct: 192  GSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDISKCW 250

Query: 898  SKKSGDPESSNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHM 737
              +  D  +           E    +  +  ++AE      G    SD W+LD+  T+HM
Sbjct: 251  KLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHM 310

Query: 736  TSRREWFHTYEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLL 557
               R+WF TYE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+
Sbjct: 311  CPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLI 370

Query: 556  SLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAE 377
            SL  LD  G K    DGI+K+ KG++VVMKA   +ANLY L+G T+ G  A V+ + S  
Sbjct: 371  SLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNS 430

Query: 376  ESTTMWHHKLGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKG 197
            ++T +WH +LGHM E GL  LS++ LL G +   L FCEHC+  K  ++KF  ST  ++G
Sbjct: 431  DATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEG 490

Query: 196  ILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELE 20
            IL+ +HSD+W  A  +S GGARY ++ +DDYSR+ W Y +K K   F+VFK +K  +E +
Sbjct: 491  ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQ 550

Query: 19   S 17
            +
Sbjct: 551  T 551


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  278 bits (710), Expect = 4e-72
 Identities = 159/412 (38%), Positives = 236/412 (57%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L+  E+  A+  +E  ++     +GS+ QAE L
Sbjct: 181  ILLCSLPSSY----ANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPS-EGSNSQAEGL 235

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   +CW  +  D  +
Sbjct: 236  VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDISECWKLQDKDKRT 294

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++ E      G    SD W+LD+  T+HM   R+WF T
Sbjct: 295  GKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFAT 354

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 355  YEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKG 414

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 415  YKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 474

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS+++LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 475  LGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK +K  +E ++
Sbjct: 535  WGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQT 586


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  278 bits (710), Expect = 4e-72
 Identities = 159/412 (38%), Positives = 236/412 (57%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L+  E+  A+  +E  ++     +GS+ QAE L
Sbjct: 181  ILLCSLPSSY----ANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPS-EGSNSQAEGL 235

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   +CW  +  D  +
Sbjct: 236  VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDISECWKLQDKDKRT 294

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++ E      G    SD W+LD+  T+HM   R+WF T
Sbjct: 295  GKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFAT 354

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 355  YEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKG 414

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 415  YKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 474

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS+++LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 475  LGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK +K  +E ++
Sbjct: 535  WGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQT 586


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  277 bits (708), Expect = 7e-72
 Identities = 160/412 (38%), Positives = 234/412 (56%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +GS+ QAE L
Sbjct: 55   ILLCSLPSSY----ANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPS-EGSNSQAEGL 109

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   +CW  +  D  +
Sbjct: 110  VVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYK-SCKYCKRDGHDISECWKLQDKDKRT 168

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++AE      G    SD W+LD+  T+HM   R+WF T
Sbjct: 169  RKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 228

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 229  YEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKG 288

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+   ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 289  YKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 348

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS++ LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 349  LGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 408

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK +K  +E ++
Sbjct: 409  WGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQT 460


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  275 bits (702), Expect = 4e-71
 Identities = 159/412 (38%), Positives = 234/412 (56%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +GS+ QAE L
Sbjct: 131  ILLCSLPSSY----ANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPS-EGSNSQAEGL 185

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH    CW  +  D  +
Sbjct: 186  VVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDISKCWKLQDKDKRT 244

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++AE      G    SD W+LD+  T+HM   R+WF T
Sbjct: 245  GKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 304

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 305  YEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKG 364

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 365  YKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMR 424

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS + LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 425  LGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 484

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GGARY ++ ++DYSR+ W Y +K K   F+VFK +K  +E ++
Sbjct: 485  WGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQT 536


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  273 bits (698), Expect = 1e-70
 Identities = 163/417 (39%), Positives = 235/417 (56%), Gaps = 20/417 (4%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +GS+ Q E+L
Sbjct: 88   ILLCSLPSSY----ANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPS-EGSNSQPESL 142

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   DCW  ++ +   
Sbjct: 143  VVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYK-SCKYCKRGGHDISDCWKLQNKEKHK 201

Query: 871  SN--------AQGNIASTSEN---GEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRR 725
             N         QG  A  ++N    E+L   A     G    SD WLLD+G T+HM   R
Sbjct: 202  GNYKPKGKQEEQGKAAVATDNKPDAELLVAYA-----GCVQTSDEWLLDTGCTYHMCPNR 256

Query: 724  EWFHTYEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQ 545
            +WF TYEP+ GG+V MG++    +AG+GTI+IKMFDG +RT+ +VRH+  L++NL+SL  
Sbjct: 257  DWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLST 316

Query: 544  LDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTT 365
            LD  G +    DGI+K+ KG++VVMKA+   A+LY L+G T+ G    VA    +  ++ 
Sbjct: 317  LDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGN---VAAVTDSLSNSD 373

Query: 364  MWHHKLGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILEL 185
            +WH +LGHM E GL  LS++ LL G     L FCEHC+  K  ++KF  ST  ++GIL+ 
Sbjct: 374  LWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDY 433

Query: 184  IHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            +HSD+W  A   S GGARY ++ +DDYSR+ W Y +K K + F VFK +K  +E ++
Sbjct: 434  VHSDLWGPARKRSFGGARYMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQT 490


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  268 bits (686), Expect = 3e-69
 Identities = 149/406 (36%), Positives = 231/406 (56%), Gaps = 9/406 (2%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            LLL SLP SY     N  + +L   D L   E+  A L+   + +       SS + EAL
Sbjct: 148  LLLCSLPSSY----ANFRDTILLSRDELTLAEVYEA-LQNREKMKGMVQSDASSSKGEAL 202

Query: 1033 AV-----VXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPESS 869
             V                 SQ+ GRSKSR KK   C  C K+ HF ++CW  ++ +   S
Sbjct: 203  QVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKF--CKYCKKKNHFIEECWKLQNKEKRKS 260

Query: 868  NAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTYEPISGG 689
            + + ++ +++EN +   G+      G     D W+LD+  ++H+   R+WF +Y+ +  G
Sbjct: 261  DGKASVVTSAENSDS--GDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNG 318

Query: 688  SVF-MGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGCKTRIE 512
             V  MG+D+  +I GIG+++IK  DG  RT+++VRH+ G+ +NL+SL  LD  G K    
Sbjct: 319  DVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSS 378

Query: 511  DGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKLGHMLE 332
             G++K+ KG++V M  +  +ANLY+L+G T+ G     AV+      T +WH +LGHM E
Sbjct: 379  GGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSE 438

Query: 331  QGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW-QAPL 155
             G+  L ++ LL G T+  + FCEHCV  K  ++KF  S  ++KGIL+ +H+D+W  +  
Sbjct: 439  LGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRK 498

Query: 154  SSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            + LGGARY ++ IDDYSR+ W Y +K K D F+ FK +K +IE ++
Sbjct: 499  AYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQT 544


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  268 bits (685), Expect = 3e-69
 Identities = 156/412 (37%), Positives = 231/412 (56%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +GS+ QAE L
Sbjct: 353  ILLCSLPSSY----ANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPS-EGSNSQAEGL 407

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   +CW     D  +
Sbjct: 408  IVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRT 466

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++AE      G    SD W+L++   +HM   R+WF T
Sbjct: 467  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFAT 526

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE +  G+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 527  YEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKG 586

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 587  YKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 646

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS++ LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 647  LGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 706

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GG RY ++ +DDYSR+ W Y +K K   F VFK +K  +E ++
Sbjct: 707  WGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQT 758


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  268 bits (685), Expect = 3e-69
 Identities = 156/412 (37%), Positives = 231/412 (56%), Gaps = 15/412 (3%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            +LL SLP SY     N  + +L   D L   E+  A+  +E  ++     +GS+ QAE L
Sbjct: 146  ILLCSLPSSY----ANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPS-EGSNSQAEGL 200

Query: 1033 AVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPES 872
             V            S++       GRSKSR +    C  C + GH   +CW     D  +
Sbjct: 201  IVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRT 259

Query: 871  SNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWHMTSRREWFHT 710
                       E    +  +  ++AE      G    SD W+L++   +HM   R+WF T
Sbjct: 260  GKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFAT 319

Query: 709  YEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVG 530
            YE +  G+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L+SL  LD  G
Sbjct: 320  YEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKG 379

Query: 529  CKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHK 350
             K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S  ++T +WH +
Sbjct: 380  YKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 439

Query: 349  LGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDV 170
            LGHM E GL  LS++ LL G +   L FCEHC+  K  ++KF  ST  ++GIL+ +HSD+
Sbjct: 440  LGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 499

Query: 169  W-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
            W  A  +S GG RY ++ +DDYSR+ W Y +K K   F VFK +K  +E ++
Sbjct: 500  WGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQT 551


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  266 bits (681), Expect = 1e-68
 Identities = 148/406 (36%), Positives = 230/406 (56%), Gaps = 9/406 (2%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            LLL SLP SY+    N  + +L   D L   E+  A L+   + +       SS + EAL
Sbjct: 148  LLLCSLPSSYE----NFRDTILLSRDELTLAEVYEA-LQNREKMKGMVQSDASSSKGEAL 202

Query: 1033 AVVXXXXXXXXXXXS-----QNHGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPESS 869
             V            +     ++ GRSKSR KK   C  C K+ HF K+CW  ++ +   S
Sbjct: 203  QVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKF--CKYCKKKIHFIKECWKLQNKEKRKS 260

Query: 868  NAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTYEPISGG 689
            + + ++ ++++N +   G+      G     D W+LD+  ++H+   R+WF +Y+ +  G
Sbjct: 261  DGKASVVTSAKNSDS--GDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNG 318

Query: 688  SVF-MGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGCKTRIE 512
             V  MGND+  +I GIG+++IK  DG  RT+++VRH+ G+ +NL+SL  LD  G K    
Sbjct: 319  DVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGS 378

Query: 511  DGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKLGHMLE 332
             G++K+ KG++V M  +  +ANLY+L+G T+ G     AV       T +WH +LGHM E
Sbjct: 379  GGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSE 438

Query: 331  QGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW-QAPL 155
             G+  L ++ LL G T+ ++ FCE CV  K  ++KF  S  ++KGIL+ +H+D+W  +  
Sbjct: 439  LGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRK 498

Query: 154  SSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
             SLGGARY ++ IDDYSR+ W Y +K K D F+ FK +K  IE ++
Sbjct: 499  PSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQT 544


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  266 bits (681), Expect = 1e-68
 Identities = 145/362 (40%), Positives = 212/362 (58%), Gaps = 13/362 (3%)
 Frame = -3

Query: 1063 QGSSHQAEALAVVXXXXXXXXXXXSQN------HGRSKSRSKKNIKCYNCGKRGHFKKDC 902
            +GS+ QAE L V            S++       GRSKSR +    C  C + GH    C
Sbjct: 8    EGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK-SCKYCKRDGHDISKC 66

Query: 901  WSKKSGDPESSNAQGNIASTSENGEVLYGEATTNAE------GRKLFSDVWLLDSGATWH 740
            W  +  D  +           E    +  +  ++AE      G    SD W+LD+  T+H
Sbjct: 67   WKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYH 126

Query: 739  MTSRREWFHTYEPISGGSVFMGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNL 560
            M   R+WF TYE + GG+V MG+D   ++AGIGT++IKMFDG +RT+ +VRH+  L+++L
Sbjct: 127  MCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSL 186

Query: 559  LSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSA 380
            +SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A V+ + S 
Sbjct: 187  ISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSN 246

Query: 379  EESTTMWHHKLGHMLEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSK 200
             ++T +WH +LGHM E GL  LS + LL G +   L FCEHC+  K  ++KF  ST  ++
Sbjct: 247  SDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 306

Query: 199  GILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIEL 23
            GIL+ +HSD+W  A  +S GGARY ++ ++DYSR+ W Y +K K   F+VFK +K  +E 
Sbjct: 307  GILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 366

Query: 22   ES 17
            ++
Sbjct: 367  QT 368


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  264 bits (675), Expect = 5e-68
 Identities = 149/406 (36%), Positives = 228/406 (56%), Gaps = 9/406 (2%)
 Frame = -3

Query: 1207 LLLQSLPDSYDQLIINLTNNVL--SDYLVFDEIAAAILEEESRRRNKEDRQGSSHQAEAL 1034
            LLL SLP SY     N  + +L   D L   E+  A L+   + +       SS + EAL
Sbjct: 148  LLLCSLPSSY----ANFRHTILLSRDELTLAEVYEA-LQNREKMKGMVQSYASSSKGEAL 202

Query: 1033 AV-----VXXXXXXXXXXXSQNHGRSKSRSKKNIKCYNCGKRGHFKKDCWSKKSGDPESS 869
             V                 SQ+ GRSKSR KK   C  C K+ HF ++CW  ++ +   S
Sbjct: 203  QVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKF--CKYCKKKNHFIEECWKLQNKEKRKS 260

Query: 868  NAQGNIASTSENGEVLYGEATTNAEGRKLFSDVWLLDSGATWHMTSRREWFHTYEPISGG 689
            + + ++ +++EN +   G+      G     D W+LD+  ++H+   R+WF +Y+ +   
Sbjct: 261  DGKASVVTSAENSDS--GDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNE 318

Query: 688  SVF-MGNDHALDIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSLGQLDDVGCKTRIE 512
             V  MG+D+  +I GIG+++IK  DG  RT+++VRH+ G+ +NL+SL  LD  G K    
Sbjct: 319  DVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGS 378

Query: 511  DGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEAYVAVAGSAEESTTMWHHKLGHMLE 332
             G++K+ KG++V M  +  +ANLY+L+G T+ G     AV       T +WH +LGHM E
Sbjct: 379  GGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSE 438

Query: 331  QGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKFGRSTSKSKGILELIHSDVW-QAPL 155
             G+  L ++ LL G T+ ++ FCEHCV  K  ++KF  S  ++KGIL+ +H+D+W  +  
Sbjct: 439  LGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRK 498

Query: 154  SSLGGARYFVSFIDDYSRRCWVYPIKRKVDVFSVFKVYKAQIELES 17
             SLGGARY ++ IDDYSR+ W Y +K K D F+ FK  K  IE ++
Sbjct: 499  PSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQT 544