BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00019016
         (672 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   294   1e-77
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   289   5e-76
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom...   286   5e-75
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   281   1e-73
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   275   9e-72
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   271   1e-70
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   270   4e-70
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   270   4e-70
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   270   4e-70
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   268   1e-69
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe...   258   9e-67
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   258   9e-67
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise...   258   2e-66
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   257   2e-66
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      257   2e-66
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   257   3e-66
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   255   8e-66
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               255   8e-66
emb|CAB83107.1| sigma factor 3 [Sinapis alba]                         255   1e-65
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   254   1e-65

>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  294 bits (753), Expect = 1e-77
 Identities = 141/188 (75%), Positives = 169/188 (89%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LE++R+ILEEETGQ+A+ SSWA+AAGI++KELQQHL++GW+CRDELL+STRSLV+++A+
Sbjct: 272 QLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLAR 331

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLGVAFEDL+QAGNMGVLQGA RFD TRGYKFSTYVQYWIRKS+S LVA+HARGVR+
Sbjct: 332 NYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRI 391

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P T+ KVINQ+ KARKTLS S GK+P D EIAKFTGLS A+I  ASKCLRVV SIDQK+G
Sbjct: 392 PFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVG 451

Query: 132 EGINIKYM 109
           + IN K +
Sbjct: 452 DCINAKVL 459


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  289 bits (740), Expect = 5e-76
 Identities = 139/188 (73%), Positives = 168/188 (89%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LE++R+ILEEETG++A+ SSWAEAAGI++KELQQ L++GW+CRDELL+STRSLV+++A+
Sbjct: 276 QLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLAR 335

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLGVAFEDL+QAGNMGVLQGA RFD TRGYKFSTYVQYWIRKS+S LVA+HARGVR+
Sbjct: 336 NYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRI 395

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P T+ KVINQ+ KARKTLS S GK+P D EIAKFTGLS A+I  ASKCLRVV SIDQK+G
Sbjct: 396 PFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVG 455

Query: 132 EGINIKYM 109
           + I+ K +
Sbjct: 456 DCISAKVL 463


>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
          Length = 848

 Score =  286 bits (731), Expect = 5e-75
 Identities = 136/187 (72%), Positives = 165/187 (88%)
 Frame = -1

Query: 669  LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
            LE++RT LEEETG+ ASLS WAEAAG+ +K LQQHL +GW+CRDELLRSTRSLV++ A+N
Sbjct: 569  LERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARN 628

Query: 489  YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
            Y GLG+A EDL+QAG++GVLQGAERFD TRGY+FSTYVQ+WIRKS+S +VARHARG++VP
Sbjct: 629  YRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVP 688

Query: 309  CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 130
            CTLS+ I Q+QKARK LS S GKYPD+  IAKFTGLS+AKI SA+KC+RVV SIDQKIG+
Sbjct: 689  CTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGD 748

Query: 129  GINIKYM 109
             +N KY+
Sbjct: 749  CMNAKYL 755


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  281 bits (720), Expect = 1e-73
 Identities = 133/188 (70%), Positives = 163/188 (86%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LEK+RT LEEET ++ SLS WAEAAG+  K LQQ L +GW+CRDEL++STRSLV++ A+
Sbjct: 280 DLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFAR 339

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY G G+A EDL+QAGN+GVL+GAERFD TRGY+FSTYVQYWIRKSMS +V+R ARG+++
Sbjct: 340 NYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQI 399

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           PCTLS+ I Q+QKARK L+TS GKYPDD EIAK+TGLS+AKI SAS+CLRVV SIDQKIG
Sbjct: 400 PCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIG 459

Query: 132 EGINIKYM 109
           E +N KY+
Sbjct: 460 ESLNAKYL 467


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  275 bits (703), Expect = 9e-72
 Identities = 129/187 (68%), Positives = 159/187 (85%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LE++RT LEEETGQ+ SLS WAEA G+ KK LQQ L +GW+CRDEL+++T SLV++IA+
Sbjct: 279 DLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIAR 338

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY G+G+A EDL+QAGN+G+LQGAERFD TRGY+FSTYVQYWIRKSM  +V RHARG+++
Sbjct: 339 NYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQI 398

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P  LS+ IN++QKARK LS S G+YPDD E+AKFTGLS+AKI SA KCLRVV S+DQKIG
Sbjct: 399 PYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIG 458

Query: 132 EGINIKY 112
           EG   KY
Sbjct: 459 EGHYAKY 465


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553990|gb|ESR64004.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  271 bits (693), Expect = 1e-70
 Identities = 123/188 (65%), Positives = 166/188 (88%)
 Frame = -1

Query: 669 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
           LE+++T LE+E+G+ ASL+ WA+AAG+ ++ L+QHL +GW+CR+EL++STR LV+F+A+N
Sbjct: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314

Query: 489 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
           Y GLG+ F DL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKS+S +VARHARG+++P
Sbjct: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374

Query: 309 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 130
           C L++ I+++QKARK L+ S GKYP+D EIAK+TGLS+A+I SAS+CLR+V SIDQKIG+
Sbjct: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434

Query: 129 GINIKYMV 106
            +N KY+V
Sbjct: 435 CLNAKYLV 442


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  270 bits (689), Expect = 4e-70
 Identities = 122/187 (65%), Positives = 165/187 (88%)
 Frame = -1

Query: 669 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
           LE+++T LE+E+G+ ASL+ WA+AAG+ ++ L+QHL +GW+CR+EL++STR LV+F+A+N
Sbjct: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314

Query: 489 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
           Y GLG+ F DL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKS+S +VARHARG+++P
Sbjct: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374

Query: 309 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 130
           C L++ I+++QKARK L+ S GKYP+D EIAK+TGLS+A+I SAS+CLR+V SIDQKIG+
Sbjct: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434

Query: 129 GINIKYM 109
            +N KY+
Sbjct: 435 CLNAKYL 441


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  270 bits (689), Expect = 4e-70
 Identities = 129/176 (73%), Positives = 153/176 (86%)
 Frame = -1

Query: 669 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
           LE++R  LEEE G +ASLS+WAEAAG+ KK LQQ L +GW+CRDELLRST SLV++IA+N
Sbjct: 282 LERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARN 341

Query: 489 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
           Y G+GVAFED++QAGN+GVLQGAERFD T+GY+FSTYVQYWIRKSMSTLVARHARGV++P
Sbjct: 342 YRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 401

Query: 309 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQ 142
            TL++ I Q+QKARK L  S G+YPDD+EIAKFTGLS+AKI SA  CLRVV S DQ
Sbjct: 402 FTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQ 457


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  270 bits (689), Expect = 4e-70
 Identities = 129/176 (73%), Positives = 153/176 (86%)
 Frame = -1

Query: 669 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
           LE++R  LEEE G +ASLS+WAEAAG+ KK LQQ L +GW+CRDELLRST SLV++IA+N
Sbjct: 332 LERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARN 391

Query: 489 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
           Y G+GVAFED++QAGN+GVLQGAERFD T+GY+FSTYVQYWIRKSMSTLVARHARGV++P
Sbjct: 392 YRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 451

Query: 309 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQ 142
            TL++ I Q+QKARK L  S G+YPDD+EIAKFTGLS+AKI SA  CLRVV S DQ
Sbjct: 452 FTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQ 507


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  268 bits (684), Expect = 1e-69
 Identities = 121/187 (64%), Positives = 164/187 (87%)
 Frame = -1

Query: 669 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 490
           LE+++T LE+E+G+ A L+ WA+AAG+ ++ L+QHL +GW+CR+EL++STR LV+F+A+N
Sbjct: 255 LERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314

Query: 489 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 310
           Y GLG+ F DL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKS+S +VARHARG+++P
Sbjct: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374

Query: 309 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 130
           C L++ I+++QKARK L+ S GKYP+D EIAK+TGLS+A+I SAS+CLR+V SIDQKIG+
Sbjct: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434

Query: 129 GINIKYM 109
            +N KY+
Sbjct: 435 CLNAKYL 441


>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  258 bits (660), Expect = 9e-67
 Identities = 124/188 (65%), Positives = 157/188 (83%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LE+++  LE+ETG++A+L  WAEAAG+ +K L QHL +GW+C+DEL+RSTRSLV+++A+
Sbjct: 275 DLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLAR 334

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLGVA +DL+QAGN+G+LQGAERFD +RGY+FSTYVQYWIRKSMS LVA+HARGV++
Sbjct: 335 NYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQI 394

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P TLSK INQ+QKARK    S  KYPDD EIAK TGLS+A+I SAS CLRVV S+D K+ 
Sbjct: 395 PFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMW 454

Query: 132 EGINIKYM 109
           E  +  YM
Sbjct: 455 ESSDGTYM 462


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  258 bits (660), Expect = 9e-67
 Identities = 122/189 (64%), Positives = 162/189 (85%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEE+G++ASLS WAEAAG+ +K L ++L+YGW+CRDELL+STRSLV+F+A+
Sbjct: 287 DMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLAR 346

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMS +V+RHARGV +
Sbjct: 347 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHI 406

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + INQ+QKARKTL TS G KYP D +I+K T LSV KI +A++CL+VV SI++K+
Sbjct: 407 PSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKV 466

Query: 135 GEGINIKYM 109
           G+  + K++
Sbjct: 467 GDCFSTKFL 475


>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
          Length = 463

 Score =  258 bits (658), Expect = 2e-66
 Identities = 119/180 (66%), Positives = 153/180 (85%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ELE++R  +E+E+G+  S S WAEAA I+ KEL++ L YGWHCRD+LL+S+RSLV+FIA+
Sbjct: 191 ELERIRKKVEDESGETPSFSRWAEAARIESKELKRRLNYGWHCRDQLLKSSRSLVVFIAR 250

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NYWGLG+AFEDL+QAGNM VL+GAERFDQ+RGYKFSTYVQYWIRKSMS LVA H+RG+R+
Sbjct: 251 NYWGLGIAFEDLIQAGNMAVLRGAERFDQSRGYKFSTYVQYWIRKSMSMLVANHSRGIRI 310

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P T++KVINQVQ ARK L  +TG+ P D E+AK TG+S+ +I SA +C RVV S+D+++G
Sbjct: 311 PGTMNKVINQVQNARKQLCAATGRTPSDLEVAKLTGISLERIRSAGRCPRVVGSVDRRVG 370


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  257 bits (657), Expect = 2e-66
 Identities = 122/181 (67%), Positives = 155/181 (85%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LE+L+  LE+ETG++ +L  WAEAAG+ +K LQQ L++GW+C+DEL+RSTRSLV+++A+
Sbjct: 264 DLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLAR 323

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLGVA +DL+QAGN+G+LQGAERFD +RGY+FSTYVQYWIRKSMS LVA+HARG+++
Sbjct: 324 NYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKI 383

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P TLSK IN++QKARK    S  KYPDD EIAK TGLS+AKI SAS+CLRVV S+D KI 
Sbjct: 384 PNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIW 443

Query: 132 E 130
           E
Sbjct: 444 E 444


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  257 bits (657), Expect = 2e-66
 Identities = 122/188 (64%), Positives = 156/188 (82%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           +LEK++  LE+ETG+  SL+ WAEAAGI +K LQ  L++GW+CRDELL+S RSLV+++++
Sbjct: 269 QLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSR 328

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
            Y GLGVA EDL+QAGN+G+LQGAERFD TRGY+FSTYVQYWIRK+MS LV+RH RG++V
Sbjct: 329 YYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKV 388

Query: 312 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 133
           P TLS  IN+VQKARK L  S GK+PDD E++K TGLS+ KI SA  CLR+V S+DQK+G
Sbjct: 389 PTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVG 448

Query: 132 EGINIKYM 109
             IN+KY+
Sbjct: 449 HFINMKYL 456


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
           gi|482559522|gb|EOA23713.1| hypothetical protein
           CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  257 bits (656), Expect = 3e-66
 Identities = 122/189 (64%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEE+G++ASLS WAEAAG+ +K L ++L+YGW+CRDELL+STRSLV+F+A+
Sbjct: 300 DMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLAR 359

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLG+A EDL+QAG +GVLQGAERFD  RGYKFSTYVQYWIRKSMS +V+RHARGV +
Sbjct: 360 NYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHI 419

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + INQ+QKARKTL TS G KYP D EI+K T LSV KI +A++CL+VV SI+ K+
Sbjct: 420 PSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKV 479

Query: 135 GEGINIKYM 109
           G+  + K++
Sbjct: 480 GDCFSTKFL 488


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  255 bits (652), Expect = 8e-66
 Identities = 122/189 (64%), Positives = 159/189 (84%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 290 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 349

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 350 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 409

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + IN +QKARKTL TS G KY  D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 410 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 469

Query: 135 GEGINIKYM 109
           G+    K++
Sbjct: 470 GDCFTTKFL 478


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  255 bits (652), Expect = 8e-66
 Identities = 122/189 (64%), Positives = 159/189 (84%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 10  DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 69

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 70  NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 129

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + IN +QKARKTL TS G KY  D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 130 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 189

Query: 135 GEGINIKYM 109
           G+    K++
Sbjct: 190 GDCFTTKFL 198


>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
          Length = 567

 Score =  255 bits (651), Expect = 1e-65
 Identities = 118/189 (62%), Positives = 161/189 (85%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEETG++AS+S WAEAAG+ +K L  +L++GW+CRDEL++STRSLV+F+A+
Sbjct: 286 DMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLAR 345

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYV+YWIRKSMST+V+RHARGV +
Sbjct: 346 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHI 405

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + ++Q+QKARKTL TS G KYP D EI+K TG S+ KI +A++CL+VV SID+K+
Sbjct: 406 PASIIRTMSQIQKARKTLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKV 465

Query: 135 GEGINIKYM 109
           G+    +++
Sbjct: 466 GDCFTTRFL 474


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  254 bits (650), Expect = 1e-65
 Identities = 121/189 (64%), Positives = 159/189 (84%), Gaps = 1/189 (0%)
 Frame = -1

Query: 672 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 493
           ++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 290 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 349

Query: 492 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 313
           NY G+G+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 350 NYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 409

Query: 312 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 136
           P ++ + IN +QKARKTL TS G KY  D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 410 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 469

Query: 135 GEGINIKYM 109
           G+    K++
Sbjct: 470 GDCFTTKFL 478