BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00016619
         (679 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK29467.1| polyprotein-like [Solanum chilense]                    120   4e-25
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   119   1e-24
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   115   9e-24
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   103   6e-23
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   103   6e-23
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   103   6e-23
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           102   2e-22
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  108   2e-21
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   107   4e-21
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   107   4e-21
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   105   1e-20
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   104   2e-20
dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis t...   103   4e-20
gb|AFB73912.1| polyprotein [Citrus sinensis]                          101   2e-19
gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]     100   4e-19
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              100   5e-19
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              100   7e-19
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              100   7e-19
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              100   7e-19
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    99   9e-19

>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  120 bits (301), Expect = 4e-25
 Identities = 70/175 (40%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPN-KRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVR 352
           CY C Q GH+ R+CPN KRG      Q ND  N A+  +N  DV ++           + 
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDD-NTAAMVQNNDDVVLL-----------IN 280

Query: 353 SNSVC------ETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDIC 514
               C      E+EW+VD+  ++H TP + LF  Y       V M N     + GIGDIC
Sbjct: 281 EEEECMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDIC 340

Query: 515 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
            K + G    LK+VRHVPDL  NLIS  AL+ DG E  F N   ++ KG+LVI K
Sbjct: 341 FKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAK 395


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  119 bits (297), Expect = 1e-24
 Identities = 59/166 (35%), Positives = 92/166 (55%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C++C + GHY++  P+++G +N +N ++  A  A  + N  DV +V       + NS   
Sbjct: 181 CFKCKKEGHYVKNXPDRKGKENKRNYNSGDATFAKENSNTTDVLLVX------VTNS--- 231

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
               + EW++DSGC++HM+P    FS Y+ +    V M N+  C V GI  I +K   G 
Sbjct: 232 ----DDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHXIQIKMHGGI 287

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVI 673
             TL NVRHVP L  NLI    L+ +G   + G G++++ KG LV+
Sbjct: 288 IRTLTNVRHVPKLNKNLIFLRTLDSNGCIYKAGGGVLRVSKGGLVV 333


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  115 bits (289), Expect = 9e-24
 Identities = 68/169 (40%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKR-GNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVR 352
           CY C Q GH+ R+CPN R G      Q ND    A    N   V  +             
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINE------EEECM 285

Query: 353 SNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 532
             S  E+EW+VD+  + H TP + LF  Y       V M N     + GIGDIC+K + G
Sbjct: 286 HLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVG 345

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
               LK+VRHVPDL  NLIS  AL+ DG E  F N   ++ KGSLVI K
Sbjct: 346 CTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAK 394


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  103 bits (256), Expect(2) = 6e-23
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C  C    H I EC   +  +  KN+ + + ++AS++ +  D    +G C V     V  
Sbjct: 232 CVYCKLKNHNIDECKKVQAKER-KNKKDGKVSVASAAASDDD----SGDCLVVFAGCVAG 286

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSG 532
           +     EW++DS C+FH+   +  FS+YK V K   V M ++  C + GIG + +K D G
Sbjct: 287 HD----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              TLKNVR++P +  NLIS + L+ +G +    +G++K+ KGSLV  K
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391



 Score = 30.8 bits (68), Expect(2) = 6e-23
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  NKGGRQNSGEVMHVRGRSQHRFGNQQ 89
           N G   + GE +HVRGR+++R  N++
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEK 213


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  103 bits (256), Expect(2) = 6e-23
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C  C    H I EC   +  +  KN+ + + ++AS++ +  D    +G C V     V  
Sbjct: 232 CVYCKLKNHNIDECKKVQAKER-KNKKDGKVSVASAAASDDD----SGDCLVVFAGCVAG 286

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSG 532
           +     EW++DS C+FH+   +  FS+YK V K   V M ++  C + GIG + +K D G
Sbjct: 287 HD----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              TLKNVR++P +  NLIS + L+ +G +    +G++K+ KGSLV  K
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391



 Score = 30.8 bits (68), Expect(2) = 6e-23
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  NKGGRQNSGEVMHVRGRSQHRFGNQQ 89
           N G   + GE +HVRGR+++R  N++
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEK 213


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  103 bits (256), Expect(2) = 6e-23
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C  C    H I EC   +  +  KN+ + + ++AS++ +  D    +G C V     V  
Sbjct: 232 CVYCKLKNHNIDECKKVQAKER-KNKKDGKVSVASAAASDDD----SGDCLVVFAGCVAG 286

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSG 532
           +     EW++DS C+FH+   +  FS+YK V K   V M ++  C + GIG + +K D G
Sbjct: 287 HD----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              TLKNVR++P +  NLIS + L+ +G +    +G++K+ KGSLV  K
Sbjct: 343 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391



 Score = 30.8 bits (68), Expect(2) = 6e-23
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  NKGGRQNSGEVMHVRGRSQHRFGNQQ 89
           N G   + GE +HVRGR+++R  N++
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEK 213


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  102 bits (255), Expect(2) = 2e-22
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C  C    H I EC   +  +  KN+ + + ++AS++ +  D    +G C V     V  
Sbjct: 234 CVYCKLKNHNIDECKKVQAKER-KNKKDGKVSVASAAVSDDD----SGDCLVVFAGCVAG 288

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSG 532
           +     EW++DS C+FH+   +  FS+YK V K   V M ++  C + GIG + +K D G
Sbjct: 289 HD----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 344

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              TLKNVR++P +  NLIS + L+ +G +    +G++K+ KGSLV  K
Sbjct: 345 MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 393



 Score = 29.6 bits (65), Expect(2) = 2e-22
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  NKGGRQNSGEVMHVRGRSQHRFGNQQ 89
           N G   + GE +HVRGR++++  N++
Sbjct: 190 NDGSSSSKGEALHVRGRTENKTSNEK 215


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  108 bits (269), Expect = 2e-21
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIREC-PNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVR 352
           CY CG+ GH  ++C  NK+  +     S  Q  +AS+S++   ++    +       S +
Sbjct: 230 CYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAV-------STK 282

Query: 353 SNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 532
             +     W+VDSG T+HMTP +  F  Y+ V    V M N+    + GIG + +K   G
Sbjct: 283 GKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDG 342

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              TL+ VRHV +L  NL+S   L+D G +     G++K++KGSLV+ K
Sbjct: 343 TIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMK 391


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  107 bits (266), Expect = 4e-21
 Identities = 60/168 (35%), Positives = 87/168 (51%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           CY C + G   R CP+++  Q  K Q+   A +     ++ +V             ++R 
Sbjct: 126 CYHCNKIGQIRRICPDRQ--QEEKTQAQGSAAIIDDGYDSTEVL------------TIRL 171

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
           N   E EW++DSGCT+HM P +  FS+Y+EV    + + N   CNV GIG + +    G 
Sbjct: 172 NPNHE-EWVLDSGCTYHMCPRRDWFSSYQEVNGGKLLLGNNMSCNVVGIGTMAINMHDGK 230

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
             TLK VRHVPDL  NLIS   L+  G   +  NG + I K ++V+ K
Sbjct: 231 TRTLKEVRHVPDLKRNLISLGTLDKSGYNFKAKNGKLTISKXAMVVMK 278


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  107 bits (266), Expect = 4e-21
 Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 2/170 (1%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPN--KRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSV 349
           C+ CG+ GH+ ++C    +R     +   N +++LA S+E      ++    +  +V   
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDS 280

Query: 350 RSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDS 529
            +N     EW++D+GC+FHMTP K  F ++KE+ + +V M N+    V GIG I ++   
Sbjct: 281 IAN-----EWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSD 335

Query: 530 GYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
           G    L +VR++P++  NLIS   LED G   +  +G++KI+KG   I K
Sbjct: 336 GSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILK 385


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  105 bits (263), Expect = 1e-20
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
 Frame = +2

Query: 176 CYECGQSGHYIREC---PNK---RGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPI 337
           C  C + GH I +C    NK   +GN   K +  +Q   A +++N  D  ++     V  
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELL-----VAY 232

Query: 338 VNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICL 517
              V+++     EWL+D+GCT+HM P +  F+ Y+ V+   V M +   C V G+G I +
Sbjct: 233 AGCVQTSD----EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQI 288

Query: 518 KFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
           K   G   TL +VRH+P L  NLIS + L+  G     G+G++K+ KGSLV+ K
Sbjct: 289 KMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMK 342


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  104 bits (260), Expect = 2e-20
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
 Frame = +2

Query: 176 CYECGQSGHYIREC-----PNKRGNQNFKNQSN-------DQANLASSSENAGDVFMVTG 319
           C+ CG+ GH+ ++C      NK+GN + K +S+       D A LA   E+  D      
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNAD------ 297

Query: 320 ICDVPIVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFG 499
                       N   + EW++D+GC+FHMTP +  F  + E +   V MAN+    + G
Sbjct: 298 ------------NQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKG 345

Query: 500 IGDICLKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
           IG I ++ D      LKNVR+VP +  NLIS   LED G   +   G +K++KG + + K
Sbjct: 346 IGSIRIQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLK 405


>dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1338

 Score =  103 bits (258), Expect = 4e-20
 Identities = 56/168 (33%), Positives = 88/168 (52%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C+ CGQ GH   EC  ++ N++ K     + + A S  + G VFMV+         + R+
Sbjct: 261 CWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSAQSIVSGGSVFMVSEA-------AARA 313

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
           +     EW+ D+GCT HM+  K  F +    ++  VSMAN+    V GIG + +  D G 
Sbjct: 314 SKGSSEEWICDTGCTSHMSSRKEWFEDLVFSESGNVSMANDTTLQVKGIGSVRILNDDGT 373

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              L NV ++P +  NLIS   LE+ G   +  NG++K++KG + + K
Sbjct: 374 TVLLTNVMYIPGMSKNLISLGTLENKGCWFKSKNGILKVIKGCITLMK 421


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  101 bits (251), Expect = 2e-19
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
 Frame = +2

Query: 176 CYECGQSGHYIREC--PNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSV 349
           CY CG+ GH  +EC    KR        SN Q  +AS+S++   ++      +  IV+  
Sbjct: 230 CYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYS-----EATIVSEG 284

Query: 350 RSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDS 529
           R        WL+DSG T+HMT  +  F  Y+ +    V M N+    + GIG I +K   
Sbjct: 285 RKR--LSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFD 342

Query: 530 GYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
           G   T++ VRHV  L  NL+S   ++  G +    NG+MKI+KG+LV+ K
Sbjct: 343 GTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMK 392


>gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1433

 Score =  100 bits (249), Expect = 4e-19
 Identities = 58/168 (34%), Positives = 87/168 (51%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           C+ CGQ GH  R+CP ++G +    Q++  AN+   +   G     +G  ++P V SV  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKALAGQTSKSANVTIGNTGDG-----SGYGNLPTVFSVNQ 296

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
           +    T W VD+G   H+     LFS+Y+  + S V M N    +V G+G + LKF SG 
Sbjct: 297 S----TNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGK 352

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              LKNV+HVP +  NL+S + L  DG +  F +  + + K    I K
Sbjct: 353 IVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFISK 400


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  100 bits (248), Expect = 5e-19
 Identities = 51/168 (30%), Positives = 83/168 (49%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           CY CG  GH  +EC N + N    +++       +S+ + G++             S   
Sbjct: 230 CYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEA------ATSSEG 283

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
                  W++DSG T+HMTP +  F +Y+ +    V M N+    + G+G I LK   G 
Sbjct: 284 ERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              ++ VRHV  L  NL+S   L+D G +    +G++K++KG+LV+ K
Sbjct: 344 VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMK 391


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 51/168 (30%), Positives = 85/168 (50%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           CY CG  GH  +EC N + N    ++++      +S+ + G++             S + 
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEA------ATSSKG 283

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
                  W++DSG T+HMTP +  F +Y+ +    V M N+    + G+G I LK   G 
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              ++ VRHV  L  NL+S   L+D G +    +G++K++KG+LV+ K
Sbjct: 344 VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 51/168 (30%), Positives = 85/168 (50%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           CY CG  GH  +EC N + N    ++++      +S+ + G++             S + 
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEA------ATSSKG 283

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
                  W++DSG T+HMTP +  F +Y+ +    V M N+    + G+G I LK   G 
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              ++ VRHV  L  NL+S   L+D G +    +G++K++KG+LV+ K
Sbjct: 344 VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 51/168 (30%), Positives = 85/168 (50%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLASSSENAGDVFMVTGICDVPIVNSVRS 355
           CY CG  GH  +EC N + N    ++++      +S+ + G++             S + 
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEA------ATSSKG 283

Query: 356 NSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGY 535
                  W++DSG T+HMTP +  F +Y+ +    V M N+    + G+G I LK   G 
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGT 343

Query: 536 AYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
              ++ VRHV  L  NL+S   L+D G +    +G++K++KG+LV+ K
Sbjct: 344 VRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 99.4 bits (246), Expect = 9e-19
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
 Frame = +2

Query: 176 CYECGQSGHYIRECPNKRGNQNFKNQSNDQANLAS-SSENAGDVFMVTGICDVPIVNSVR 352
           C  C + GH+ ++CP  +     K +    AN+A   S+   D+ ++  +          
Sbjct: 171 CAFCHEKGHWKKDCPKLQK----KEKVLQDANVAECKSDVESDISLIVSL---------- 216

Query: 353 SNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSG 532
           S S+   EW++DSGCT+HM P +  F  ++E+    V M N+  C   GIG I L+   G
Sbjct: 217 SASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDG 276

Query: 533 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK 679
               L++VR+VP L  NLIS  ALE  GL     +G++K   G+LV+ K
Sbjct: 277 STRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLK 325