BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00012809
         (1271 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001275155.1| single-stranded DNA-binding protein WHY1, ch...   353   8e-95
ref|XP_004238773.1| PREDICTED: single-stranded DNA-bindig protei...   348   3e-93
ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253...   336   1e-89
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul...   335   3e-89
ref|XP_002520128.1| conserved hypothetical protein [Ricinus comm...   332   3e-88
gb|EOY02045.1| SsDNA-binding transcriptional regulator isoform 1...   331   3e-88
ref|XP_002311601.1| hypothetical protein POPTR_0008s14840g [Popu...   325   2e-86
gb|EPS66445.1| hypothetical protein M569_08332, partial [Genlise...   324   4e-86
ref|XP_002892804.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyra...   320   6e-85
ref|XP_002315793.2| hypothetical protein POPTR_0010s10260g [Popu...   317   9e-84
ref|NP_172893.1| single-stranded DNA-binding protein WHY1 [Arabi...   316   1e-83
ref|XP_006303274.1| hypothetical protein CARUB_v10010024mg [Caps...   315   2e-83
ref|XP_006483225.1| PREDICTED: single-stranded DNA-binding prote...   315   3e-83
ref|XP_006438627.1| hypothetical protein CICLE_v10032427mg [Citr...   315   3e-83
gb|ESW25830.1| hypothetical protein PHAVU_003G068800g [Phaseolus...   313   1e-82
ref|XP_004297331.1| PREDICTED: single-stranded DNA-binding prote...   312   2e-82
ref|XP_006438626.1| hypothetical protein CICLE_v10032427mg [Citr...   311   3e-82
gb|ESW25829.1| hypothetical protein PHAVU_003G068800g [Phaseolus...   311   4e-82
gb|ADL36850.1| WHY domain class transcription factor [Malus dome...   311   4e-82
gb|EMJ23674.1| hypothetical protein PRUPE_ppa009776mg [Prunus pe...   311   5e-82

>ref|NP_001275155.1| single-stranded DNA-binding protein WHY1, chloroplastic [Solanum
            tuberosum] gi|75174555|sp|Q9LL85.1|WHY1_SOLTU RecName:
            Full=Single-stranded DNA-binding protein WHY1,
            chloroplastic; AltName: Full=DNA-binding protein p24;
            AltName: Full=PR-10a binding factor 2; Short=PBF-2;
            AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
            Precursor gi|9651810|gb|AAF91282.1|AF233342_1 DNA-binding
            protein p24 [Solanum tuberosum]
          Length = 274

 Score =  353 bits (906), Expect = 8e-95
 Identities = 183/281 (65%), Positives = 217/281 (77%), Gaps = 7/281 (2%)
 Frame = -1

Query: 1148 MVNLSLYAAPAGG-GLSVRNPQKLS--SYNSAINTSILFPGTKNAPLFA--TRRGNHSKS 984
            M N SL  +P  G  L+++NP K S  S++S+INT      +     F+  T +    ++
Sbjct: 1    MSNFSLSPSPTSGFSLNLQNPTKTSYLSFSSSINTIFAPLSSNTTKSFSGLTHKAALPRN 60

Query: 983  ISFNVK-SQYLKPQEPQQKFSTYDTPLSSQP-GQLPPRVYVGYSVYKGKAALTAEPRSPE 810
            +S   + S Y +PQ+ QQ+          QP G   P+V+VGYS+YKGKAALT EPRSPE
Sbjct: 61   LSLTCRHSDYFEPQQQQQQ-------QQQQPQGASTPKVFVGYSIYKGKAALTVEPRSPE 113

Query: 809  FSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFF 630
            FSPL SGAFKLS+EG V+LQFAPA GVRQYDW RKQVFSLSVTEIG+IISLGA+DSCEFF
Sbjct: 114  FSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFF 173

Query: 629  HDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSS 450
            HDPNKGRSDEG+VRKVLKVEPLPDGSGHFFNLSVQNKL NLDE+IYIP+TKAEFAVLVS+
Sbjct: 174  HDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSA 233

Query: 449  FNFIIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
            FNF++PYLLGWHT  N+ KPEDA+R N+ANPRS  + EWNR
Sbjct: 234  FNFVMPYLLGWHTAVNSFKPEDASRSNNANPRSGAELEWNR 274


>ref|XP_004238773.1| PREDICTED: single-stranded DNA-bindig protein WHY1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 268

 Score =  348 bits (893), Expect = 3e-93
 Identities = 184/277 (66%), Positives = 211/277 (76%), Gaps = 7/277 (2%)
 Frame = -1

Query: 1136 SLYAAPAGGGLSVRNPQKLSSY---NSAINTSILFPGTKNAPLF---ATRRGNHSKSISF 975
            SL A+PA G     NP K SSY   +S+INT I  P T N        T +    +++S 
Sbjct: 5    SLSASPASG--FSLNPTKTSSYLSFSSSINT-IFAPLTSNTTKSFSGLTYKAALPRNLSL 61

Query: 974  NVK-SQYLKPQEPQQKFSTYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPL 798
              + S Y +PQ+ QQ+            G   P+V+VGYS+YKGKAALT EPRSPEFSPL
Sbjct: 62   TCRHSDYFEPQQQQQQLQ----------GASTPKVFVGYSIYKGKAALTVEPRSPEFSPL 111

Query: 797  GSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPN 618
             SGAFKLSKEG V+LQFAPA GVRQYDW RKQVFSLSVTEIG+IISLGA+DSCEFFHDPN
Sbjct: 112  DSGAFKLSKEGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPN 171

Query: 617  KGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFI 438
            KGRSDEG+VRKVLKVEPLPDGSGHFFNLSVQNKL NLDE+IYIP+TKAEFAVLVS+FNF+
Sbjct: 172  KGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFV 231

Query: 437  IPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
            +PYLLGWHT  N+ KPEDA+R N+ NPRS  + EWNR
Sbjct: 232  MPYLLGWHTAVNSFKPEDASRSNNTNPRSGAELEWNR 268


>ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
            gi|296086421|emb|CBI32010.3| unnamed protein product
            [Vitis vinifera]
          Length = 268

 Score =  336 bits (861), Expect = 1e-89
 Identities = 168/261 (64%), Positives = 210/261 (80%), Gaps = 2/261 (0%)
 Frame = -1

Query: 1103 SVRNPQKLSSYN-SAINTSILFPGTKNAPLFATRRGNHSKSISFNVK-SQYLKPQEPQQK 930
            +++NP+   +++ S++++S     T   PL  +   +  K  S   + S Y + Q   ++
Sbjct: 12   TIQNPRLCPNHSLSSLHSSSPLSFTSRTPLLLSTTRHFRKKRSLQCRQSDYFQQQNITRR 71

Query: 929  FSTYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQ 750
                D   SS  G L PRV+VG+S+YKGKAALT EP++PEF+PL SGAFK+SKEGFVLLQ
Sbjct: 72   QPPND---SSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQ 128

Query: 749  FAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVE 570
            FAPA GVRQYDWGRKQVFSLSVTEIG++ISLGAR+SCEFFHDP KGRS+EGKVRKVLKVE
Sbjct: 129  FAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRKVLKVE 188

Query: 569  PLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKP 390
            PLPDGSGHFFNLSVQNKL N+DE+IYIP+T+AEFAVL+S+FNFI+PYLLGWH +AN++KP
Sbjct: 189  PLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVPYLLGWHAYANSIKP 248

Query: 389  EDANRVNSANPRSSVDFEWNR 327
            +D +RVN+ANPRS  DFEW+R
Sbjct: 249  DDTSRVNNANPRSG-DFEWSR 268


>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
           gi|157878743|pdb|1L3A|B Chain B, Structure Of The Plant
           Transcriptional Regulator Pbf-2 gi|157878744|pdb|1L3A|C
           Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 gi|157878745|pdb|1L3A|D Chain D,
           Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 227

 Score =  335 bits (858), Expect = 3e-89
 Identities = 162/213 (76%), Positives = 182/213 (85%), Gaps = 1/213 (0%)
 Frame = -1

Query: 965 SQYLKPQEPQQKFSTYDTPLSSQP-GQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSG 789
           S Y +PQ+ QQ+          QP G   P+V+VGYS+YKGKAALT EPRSPEFSPL SG
Sbjct: 14  SDYFEPQQQQQQ-------QQQQPQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSG 66

Query: 788 AFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGR 609
           AFKLS+EG V+LQFAPA GVRQYDW RKQVFSLSVTEIG+IISLG +DSCEFFHDPNKGR
Sbjct: 67  AFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGR 126

Query: 608 SDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPY 429
           SDEG+VRKVLKVEPLPDGSGHFFNLSVQNKL NLDE+IYIP+TKAEFAVLVS+FNF++PY
Sbjct: 127 SDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPY 186

Query: 428 LLGWHTFANTMKPEDANRVNSANPRSSVDFEWN 330
           LLGWHT  N+ KPEDA+R N+ANPRS  + EWN
Sbjct: 187 LLGWHTAVNSFKPEDASRSNNANPRSGAELEWN 219


>ref|XP_002520128.1| conserved hypothetical protein [Ricinus communis]
            gi|223540620|gb|EEF42183.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 271

 Score =  332 bits (850), Expect = 3e-88
 Identities = 167/259 (64%), Positives = 199/259 (76%), Gaps = 4/259 (1%)
 Frame = -1

Query: 1091 PQKLSSYNSAINTSILFPGTKNAPLFATRRGNHS----KSISFNVKSQYLKPQEPQQKFS 924
            P   SS  S   TS  F  T +AP   +   N +    +S  ++ + Q   P  P    S
Sbjct: 17   PNTFSSLQSFRTTSTTFIHTISAPRRLSTNTNRAVKCRQSEFYDQQQQKYNPSRP----S 72

Query: 923  TYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFA 744
            + D+  +SQ     PRVYVG+S+YKGKAALT EPR+PEF+ L SGAFK+++EGFVLLQFA
Sbjct: 73   SNDSSFASQSPAAVPRVYVGHSIYKGKAALTVEPRAPEFAALDSGAFKVAREGFVLLQFA 132

Query: 743  PATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVEPL 564
            PA GVRQYDW RKQVFSLSVTEIG IISLGARDSCEFFHDPNKG+SDEGK+RKVLKVEPL
Sbjct: 133  PAAGVRQYDWSRKQVFSLSVTEIGTIISLGARDSCEFFHDPNKGKSDEGKIRKVLKVEPL 192

Query: 563  PDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKPED 384
            PDGSGHFFNLSVQNK  N+DESIYIP+TKAEFAVL+S+FN+I+PYLLGWHTFAN++KP+ 
Sbjct: 193  PDGSGHFFNLSVQNKPMNMDESIYIPVTKAEFAVLISAFNYILPYLLGWHTFANSIKPDL 252

Query: 383  ANRVNSANPRSSVDFEWNR 327
               +N+ANPR   D+EW+R
Sbjct: 253  NGHMNNANPRFGGDYEWSR 271


>gb|EOY02045.1| SsDNA-binding transcriptional regulator isoform 1 [Theobroma cacao]
          Length = 270

 Score =  331 bits (849), Expect = 3e-88
 Identities = 168/260 (64%), Positives = 200/260 (76%), Gaps = 5/260 (1%)
 Frame = -1

Query: 1091 PQKLSSYNSAINTSIL--FPGTKNAPLFATRRGNHS---KSISFNVKSQYLKPQEPQQKF 927
            P    S N   NT++L  F   K+    A +    S   K   F++K +  +  + QQ+F
Sbjct: 11   PLSAQSLNPNSNTNLLSSFSSLKSTQTHAFKLNPLSLTPKPSKFSLKCRQSEYFDQQQRF 70

Query: 926  STYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQF 747
            S   +  S     LPPR YVG+SVYKGKAALT EPR+PEF PL SGAFK+S+EGFVLLQF
Sbjct: 71   SNSSSTASPPASGLPPRFYVGHSVYKGKAALTVEPRAPEFVPLDSGAFKISREGFVLLQF 130

Query: 746  APATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVEP 567
            APA GVRQYDW RKQVFSLSVTEIG +ISLGAR+SCEFFHDP KG+S+EGKVRKVLKVEP
Sbjct: 131  APAAGVRQYDWSRKQVFSLSVTEIGALISLGARESCEFFHDPFKGKSEEGKVRKVLKVEP 190

Query: 566  LPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKPE 387
            LPDGSGHFFNL VQN+L NLDE+IYIPIT+AEF VL S+F+FI+PYLLGWH FAN++KPE
Sbjct: 191  LPDGSGHFFNLGVQNRLLNLDENIYIPITRAEFTVLNSAFSFILPYLLGWHAFANSIKPE 250

Query: 386  DANRVNSANPRSSVDFEWNR 327
            +A+RVN+ANPR   D+EW+R
Sbjct: 251  EASRVNNANPRYGGDYEWSR 270


>ref|XP_002311601.1| hypothetical protein POPTR_0008s14840g [Populus trichocarpa]
            gi|118485247|gb|ABK94483.1| unknown [Populus trichocarpa]
            gi|222851421|gb|EEE88968.1| hypothetical protein
            POPTR_0008s14840g [Populus trichocarpa]
          Length = 265

 Score =  325 bits (834), Expect = 2e-86
 Identities = 161/261 (61%), Positives = 202/261 (77%), Gaps = 2/261 (0%)
 Frame = -1

Query: 1103 SVRNPQK-LSSYNSAINTSILFPGTKNAPLFATRRGNHSKSISFNVKSQYLKPQEPQQKF 927
            S +NP+  L  YNS  +T  +   +K +        +  K  +  VK QY   Q      
Sbjct: 13   SPQNPKLWLPQYNSLCSTKSISLNSKTS--------STEKKKTLGVKCQYYDQQHKTFTT 64

Query: 926  STYDTPLSSQP-GQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQ 750
            S+  +P S+ P G+ PP+V+VG+S+YKGKAALT EPRSPEFSPL SGA+KL KEGFVLLQ
Sbjct: 65   SSRSSPSSAPPVGESPPKVFVGHSIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQ 124

Query: 749  FAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVE 570
            FAPA  VRQYDW RKQVFSLSVTEIG+++SL A+ SCEFFHDPNKG+SDEGKVRK+LKVE
Sbjct: 125  FAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVRKLLKVE 184

Query: 569  PLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKP 390
            PLPDGSGHFFNLSVQNK+ N+DE+IYIP+TKAE+ VL S+FN+I+PYLLGWH +AN++KP
Sbjct: 185  PLPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFNYILPYLLGWHAYANSIKP 244

Query: 389  EDANRVNSANPRSSVDFEWNR 327
            +D++R N+A+PR   D+EW+R
Sbjct: 245  DDSSRGNNASPRYGGDYEWSR 265


>gb|EPS66445.1| hypothetical protein M569_08332, partial [Genlisea aurea]
          Length = 187

 Score =  324 bits (831), Expect = 4e-86
 Identities = 157/189 (83%), Positives = 173/189 (91%)
 Frame = -1

Query: 893 GQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDW 714
           GQLPPRVY GYSVYKGKAA+T EPR PEFS LGSGAFK+SKEGFVLLQFAPA G RQYDW
Sbjct: 1   GQLPPRVYAGYSVYKGKAAITVEPRPPEFSSLGSGAFKVSKEGFVLLQFAPAVGSRQYDW 60

Query: 713 GRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNL 534
            RKQ+FSLSVTEIGNIISLGARDSCEFFHDPNKG+SDEG+VRKVLKVEPLPDGSGHFFNL
Sbjct: 61  TRKQIFSLSVTEIGNIISLGARDSCEFFHDPNKGKSDEGRVRKVLKVEPLPDGSGHFFNL 120

Query: 533 SVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPR 354
           SVQNK+ N+DESIYIPIT+AEFAVLVSS NFI+PYLLGWH FA+++KPED++   S N R
Sbjct: 121 SVQNKITNVDESIYIPITRAEFAVLVSSLNFIVPYLLGWHAFASSVKPEDSSSTRS-NSR 179

Query: 353 SSVDFEWNR 327
            +VDFEW+R
Sbjct: 180 -TVDFEWSR 187


>ref|XP_002892804.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338646|gb|EFH69063.1| ATWHY1/PTAC1 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 264

 Score =  320 bits (821), Expect = 6e-85
 Identities = 164/263 (62%), Positives = 201/263 (76%), Gaps = 9/263 (3%)
 Frame = -1

Query: 1088 QKLSSYNSAINTSILFPGTKNAPL---FATRRGNHS-----KSIS-FNVKSQYLKPQEPQ 936
            Q LSS   A+N++  F  + +  +   FA +R   +     K++  F+VKS+     E +
Sbjct: 3    QLLSSPPIAVNSNSRFLSSSSVLVAGGFAVKRHGFALKPTTKTVKLFSVKSRQTDYFE-K 61

Query: 935  QKFSTYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVL 756
            Q+F    +  S     LP R YVG+S+YKGKAALT EPR+PEF  L SGAFKLSK+GF+L
Sbjct: 62   QRFGDSSSSSSQNAEGLPARFYVGHSIYKGKAALTMEPRAPEFVALDSGAFKLSKDGFLL 121

Query: 755  LQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLK 576
            LQFAP+ GVRQYDW +KQVFSLSVTEIG ++SLG R+SCEFFHDP KG+SDEGKVRKVLK
Sbjct: 122  LQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLK 181

Query: 575  VEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTM 396
            VEPLPDGSGHFFNLSVQNKL N+DESIYIPIT+AEFAVL+S+FNF++PYL+GWH FAN++
Sbjct: 182  VEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWHAFANSI 241

Query: 395  KPEDANRVNSANPRSSVDFEWNR 327
            KPED NR N+A P    D+EWNR
Sbjct: 242  KPEDTNRANNAPPNYGGDYEWNR 264


>ref|XP_002315793.2| hypothetical protein POPTR_0010s10260g [Populus trichocarpa]
            gi|550329499|gb|EEF01964.2| hypothetical protein
            POPTR_0010s10260g [Populus trichocarpa]
          Length = 271

 Score =  317 bits (811), Expect = 9e-84
 Identities = 154/233 (66%), Positives = 188/233 (80%), Gaps = 5/233 (2%)
 Frame = -1

Query: 1010 TRRGNHSKSISFNVKSQYLKPQEPQQKFSTYDTPLSSQP---GQLPPRVYVGYSVYKGKA 840
            ++  N  K    +VK QY   Q  Q+ F++   P SS     G+ PP+V+VG+S+YKGKA
Sbjct: 41   SKTSNTKKKKKLSVKYQYYDHQ--QKSFTSSSRPSSSSAPPVGESPPKVFVGHSIYKGKA 98

Query: 839  ALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIIS 660
            ALT EPR+PEFSPL SGA+KL KEGFVL QFAPA+  RQYDW RKQVFSLSVTEIG+++S
Sbjct: 99   ALTIEPRAPEFSPLESGAYKLVKEGFVLSQFAPASSARQYDWTRKQVFSLSVTEIGHLVS 158

Query: 659  LGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPIT 480
            LGARDSCEFFHDPNKGRS+EGKVRKVLKVEPLPDGSGHFFNLSVQNK  N+DESIYIP+T
Sbjct: 159  LGARDSCEFFHDPNKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKALNIDESIYIPVT 218

Query: 479  KAEFAVLVSSFNFIIPYLLGWHTF--ANTMKPEDANRVNSANPRSSVDFEWNR 327
            +AE+ VL+S+FN+I+PYLLGWH +  AN++K  D++R N+ NPR   D++WNR
Sbjct: 219  RAEYTVLISAFNYILPYLLGWHAYANANSIKSADSSRENNVNPRYGGDYDWNR 271


>ref|NP_172893.1| single-stranded DNA-binding protein WHY1 [Arabidopsis thaliana]
           gi|75191428|sp|Q9M9S3.1|WHY1_ARATH RecName:
           Full=Single-stranded DNA-binding protein WHY1,
           chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 1; AltName: Full=Protein WHIRLY
           1; Short=AtWHY1; Flags: Precursor
           gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity
           to a hypothetical protein from Arabidopsis thaliana
           gb|AC002521.2. EST gb|AI995686 comes from this gene
           [Arabidopsis thaliana]
           gi|12083312|gb|AAG48815.1|AF332452_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|13877787|gb|AAK43971.1|AF370156_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|16323418|gb|AAL15203.1| putative DNA-binding protein
           p24 [Arabidopsis thaliana] gi|332191039|gb|AEE29160.1|
           ssDNA-binding transcriptional regulator [Arabidopsis
           thaliana]
          Length = 263

 Score =  316 bits (810), Expect = 1e-83
 Identities = 153/218 (70%), Positives = 185/218 (84%), Gaps = 1/218 (0%)
 Frame = -1

Query: 977 FNVKSQYLKPQEPQQKFSTYDTPLSSQPGQ-LPPRVYVGYSVYKGKAALTAEPRSPEFSP 801
           F+VKS+     E +Q+F   D+  S  P + LP R YVG+S+YKGKAALT +PR+PEF  
Sbjct: 49  FSVKSRQTDYFE-KQRFG--DSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVA 105

Query: 800 LGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDP 621
           L SGAFKLSK+GF+LLQFAP+ GVRQYDW +KQVFSLSVTEIG ++SLG R+SCEFFHDP
Sbjct: 106 LDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDP 165

Query: 620 NKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNF 441
            KG+SDEGKVRKVLKVEPLPDGSGHFFNLSVQNKL N+DESIYIPIT+AEFAVL+S+FNF
Sbjct: 166 FKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNF 225

Query: 440 IIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
           ++PYL+GWH FAN++KPE+ +RVN+A+P    D+EWNR
Sbjct: 226 VLPYLIGWHAFANSIKPEETSRVNNASPNYGGDYEWNR 263


>ref|XP_006303274.1| hypothetical protein CARUB_v10010024mg [Capsella rubella]
           gi|482571985|gb|EOA36172.1| hypothetical protein
           CARUB_v10010024mg [Capsella rubella]
          Length = 266

 Score =  315 bits (808), Expect = 2e-83
 Identities = 151/223 (67%), Positives = 187/223 (83%), Gaps = 2/223 (0%)
 Frame = -1

Query: 989 KSISFNVKSQYLKPQEPQQKFSTYDTP-LSSQPGQ-LPPRVYVGYSVYKGKAALTAEPRS 816
           K++  +VKS+     E Q+   +  +P  SSQ  +  P R YVG+S+YKGKAALT EPR+
Sbjct: 44  KTVKLSVKSRQTDYFEKQRFGDSSSSPSYSSQNAEGSPARFYVGHSIYKGKAALTVEPRA 103

Query: 815 PEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCE 636
           PEF  L SGAFKLSK+GF+LLQFAP+ GVRQYDW +KQVFSLSVTEIG ++SLG ++SCE
Sbjct: 104 PEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPKESCE 163

Query: 635 FFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLV 456
           FFHDP KG+SDEGKVRKVLKVEPLPDGSGHFFNLSVQNKL N+D++IYIPIT+AEFAVL+
Sbjct: 164 FFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNVDDNIYIPITRAEFAVLI 223

Query: 455 SSFNFIIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
           S+FNF++PYL+GWH FAN++KPED+NR+N+A+P    D+EWNR
Sbjct: 224 SAFNFVLPYLIGWHAFANSIKPEDSNRMNNASPNYGGDYEWNR 266


>ref|XP_006483225.1| PREDICTED: single-stranded DNA-binding protein WHY1,
           chloroplastic-like [Citrus sinensis]
          Length = 267

 Score =  315 bits (807), Expect = 3e-83
 Identities = 155/231 (67%), Positives = 185/231 (80%), Gaps = 9/231 (3%)
 Frame = -1

Query: 992 SKSISFNVKSQYLKPQEP----QQKFSTYDTPLSSQP-----GQLPPRVYVGYSVYKGKA 840
           ++S S   K  Y+K ++     Q+ FS   +  S  P     G LP RVYVG+S+YKGKA
Sbjct: 37  TESTSIKKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKA 96

Query: 839 ALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIIS 660
           ALT EPR PEF  L SGA KLS+EGFV+LQFAPA GVRQYDW RKQVFSLSVTEIG++++
Sbjct: 97  ALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVA 156

Query: 659 LGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPIT 480
           LGAR+SCEFFHDP KG+S+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL NLDESIYIP+T
Sbjct: 157 LGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVT 216

Query: 479 KAEFAVLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
           +AE+ VLVS+FNFI+PYLLGWH +A+T++ +D  R N+ANPR   D+EWNR
Sbjct: 217 RAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267


>ref|XP_006438627.1| hypothetical protein CICLE_v10032427mg [Citrus clementina]
           gi|557540823|gb|ESR51867.1| hypothetical protein
           CICLE_v10032427mg [Citrus clementina]
          Length = 267

 Score =  315 bits (807), Expect = 3e-83
 Identities = 155/231 (67%), Positives = 185/231 (80%), Gaps = 9/231 (3%)
 Frame = -1

Query: 992 SKSISFNVKSQYLKPQEP----QQKFSTYDTPLSSQP-----GQLPPRVYVGYSVYKGKA 840
           ++S S   K  Y+K ++     Q+ FS   +  S  P     G LP RVYVG+S+YKGKA
Sbjct: 37  TESTSIKKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKA 96

Query: 839 ALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIIS 660
           ALT EPR PEF  L SGA KLS+EGFV+LQFAPA GVRQYDW RKQVFSLSVTEIG++++
Sbjct: 97  ALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVA 156

Query: 659 LGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPIT 480
           LGAR+SCEFFHDP KG+S+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL NLDESIYIP+T
Sbjct: 157 LGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVT 216

Query: 479 KAEFAVLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
           +AE+ VLVS+FNFI+PYLLGWH +A+T++ +D  R N+ANPR   D+EWNR
Sbjct: 217 RAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267


>gb|ESW25830.1| hypothetical protein PHAVU_003G068800g [Phaseolus vulgaris]
          Length = 262

 Score =  313 bits (801), Expect = 1e-82
 Identities = 164/267 (61%), Positives = 191/267 (71%), Gaps = 12/267 (4%)
 Frame = -1

Query: 1091 PQKLSSYNSAINTSILFPGTKNAPLFATRRGNHSKSISFNVKSQYLKPQEP--------- 939
            P  LSS +S  ++S          LFA    NHS    F+ KS    P +P         
Sbjct: 12   PSMLSSLSSLSSSS--------PKLFA----NHS----FSPKSLPFNPPKPFSLRCRHSD 55

Query: 938  ---QQKFSTYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKE 768
               Q   ++   P       LPPRVYVGYS+YKGKAALT  PR PEF PL SGA+K+SKE
Sbjct: 56   LFDQNTLASSQRPTRPTASALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKE 115

Query: 767  GFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVR 588
            G+VLLQFAPA G RQYDW RKQVFSLSV E+G++ISLG R+S EFFHDP KG+SDEGKVR
Sbjct: 116  GYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESFEFFHDPFKGKSDEGKVR 175

Query: 587  KVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTF 408
            K+LK+EPLPDGSGH FNLSVQNKL N+DE+IYIPITKAE AVL S+FNFI+PYLLGWHTF
Sbjct: 176  KILKLEPLPDGSGHLFNLSVQNKLVNVDENIYIPITKAELAVLTSTFNFIMPYLLGWHTF 235

Query: 407  ANTMKPEDANRVNSANPRSSVDFEWNR 327
            AN++KPED +  N+ANPR   D+EWNR
Sbjct: 236  ANSIKPEDTSGGNNANPRYGGDYEWNR 262


>ref|XP_004297331.1| PREDICTED: single-stranded DNA-binding protein WHY1,
            chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 270

 Score =  312 bits (799), Expect = 2e-82
 Identities = 154/261 (59%), Positives = 195/261 (74%), Gaps = 1/261 (0%)
 Frame = -1

Query: 1106 LSVRNPQKLSSYNSAINTSILFPGTKNAPLFATRR-GNHSKSISFNVKSQYLKPQEPQQK 930
            ++V+NP    S  + + ++  F    N+  F  RR     +   +  + +   P  P   
Sbjct: 12   VAVQNPNHSVSSKARVFSTNSFGFAPNSTSFRKRRLALKCRQSEYFDQQRLTAPNPPSTA 71

Query: 929  FSTYDTPLSSQPGQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQ 750
             S   +P  +  G  P R YVG+S+YKGKAALT EP++PEF+ L SGAFK+S+EGFVLLQ
Sbjct: 72   ASAPQSPAGASAG--PARFYVGHSIYKGKAALTVEPKAPEFTALDSGAFKMSREGFVLLQ 129

Query: 749  FAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVE 570
            FAPA GVR YDW RKQVFSLSVTEIG+I+SLGA++SCEFFHDP KG+S+EGKVRKVLKVE
Sbjct: 130  FAPAAGVRVYDWSRKQVFSLSVTEIGSIVSLGAKESCEFFHDPFKGKSEEGKVRKVLKVE 189

Query: 569  PLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKP 390
            PLPDGSG FFNLSVQNKL NLDE+IYIP+T+AEFAVL S+FN+++PYL+GWH + N++KP
Sbjct: 190  PLPDGSGRFFNLSVQNKLINLDENIYIPVTRAEFAVLNSAFNYLLPYLIGWHAYVNSVKP 249

Query: 389  EDANRVNSANPRSSVDFEWNR 327
            ED +RVN+A PR   DFEW+R
Sbjct: 250  EDMSRVNNATPRYGGDFEWSR 270


>ref|XP_006438626.1| hypothetical protein CICLE_v10032427mg [Citrus clementina]
           gi|557540822|gb|ESR51866.1| hypothetical protein
           CICLE_v10032427mg [Citrus clementina]
          Length = 193

 Score =  311 bits (798), Expect = 3e-82
 Identities = 145/189 (76%), Positives = 168/189 (88%)
 Frame = -1

Query: 893 GQLPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDW 714
           G LP RVYVG+S+YKGKAALT EPR PEF  L SGA KLS+EGFV+LQFAPA GVRQYDW
Sbjct: 5   GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 64

Query: 713 GRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNL 534
            RKQVFSLSVTEIG++++LGAR+SCEFFHDP KG+S+EGKVRKVLKVEPLPDGSGHFFNL
Sbjct: 65  SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 124

Query: 533 SVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPR 354
           SVQNKL NLDESIYIP+T+AE+ VLVS+FNFI+PYLLGWH +A+T++ +D  R N+ANPR
Sbjct: 125 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPR 184

Query: 353 SSVDFEWNR 327
              D+EWNR
Sbjct: 185 YGGDYEWNR 193


>gb|ESW25829.1| hypothetical protein PHAVU_003G068800g [Phaseolus vulgaris]
          Length = 264

 Score =  311 bits (797), Expect = 4e-82
 Identities = 164/265 (61%), Positives = 191/265 (72%), Gaps = 10/265 (3%)
 Frame = -1

Query: 1091 PQKLSSYNSAINTSILFPGTKNAPLFATRRGNHS---KSISFNVKSQYLKPQEPQQKFST 921
            P  LSS +S  ++S          LFA    NHS   KS+ FN    +         F  
Sbjct: 12   PSMLSSLSSLSSSS--------PKLFA----NHSFSPKSLPFNPPKPFSLRCRHSDLFDQ 59

Query: 920  YDTPLSSQPGQ-------LPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGF 762
                 S +P +       LPPRVYVGYS+YKGKAALT  PR PEF PL SGA+K+SKEG+
Sbjct: 60   NTLASSQRPTRPTASVAALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGY 119

Query: 761  VLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKV 582
            VLLQFAPA G RQYDW RKQVFSLSV E+G++ISLG R+S EFFHDP KG+SDEGKVRK+
Sbjct: 120  VLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESFEFFHDPFKGKSDEGKVRKI 179

Query: 581  LKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFAN 402
            LK+EPLPDGSGH FNLSVQNKL N+DE+IYIPITKAE AVL S+FNFI+PYLLGWHTFAN
Sbjct: 180  LKLEPLPDGSGHLFNLSVQNKLVNVDENIYIPITKAELAVLTSTFNFIMPYLLGWHTFAN 239

Query: 401  TMKPEDANRVNSANPRSSVDFEWNR 327
            ++KPED +  N+ANPR   D+EWNR
Sbjct: 240  SIKPEDTSGGNNANPRYGGDYEWNR 264


>gb|ADL36850.1| WHY domain class transcription factor [Malus domestica]
          Length = 276

 Score =  311 bits (797), Expect = 4e-82
 Identities = 163/286 (56%), Positives = 207/286 (72%), Gaps = 12/286 (4%)
 Frame = -1

Query: 1148 MVNLSLYAAPAGGGLSVRNPQKLSSYNSAINTSILFPGTKNAPLFATRRGNHSKSISFNV 969
            M+ L L ++PA      +NP +       +++ +L      A +F+T     + S   + 
Sbjct: 1    MLRLHLLSSPATAQKPNQNPSQF------LSSQLL----SRARVFSTNTFGFAPSPILSR 50

Query: 968  KSQYLKPQEP----QQKFSTYDTPLSSQPGQ--------LPPRVYVGYSVYKGKAALTAE 825
            K   LK ++     QQ+ ST  +P    P          + PR YVG+S+YKGKAALT E
Sbjct: 51   KRLSLKCRQSEYFDQQRTSTAASPNKPSPAPPTPAGATGMAPRFYVGHSIYKGKAALTVE 110

Query: 824  PRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDWGRKQVFSLSVTEIGNIISLGARD 645
            P++PEF+PL SGAFKLS+EGFVLLQFAPA GVR YDW RKQVFSLSVTEIG+++SLG+++
Sbjct: 111  PKAPEFTPLDSGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVSLGSKE 170

Query: 644  SCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLANLDESIYIPITKAEFA 465
            S EFFHDP KG+SDEGKVRKVLKVEPLPDGSGHFFNLSVQNKL NLDESIYIPIT+AEFA
Sbjct: 171  SLEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPITRAEFA 230

Query: 464  VLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPRSSVDFEWNR 327
            VL S+FNFI+PY+LGWH +AN++KPED++R N++  +   DFEW+R
Sbjct: 231  VLKSAFNFILPYILGWHAYANSIKPEDSSRANNSGLKYGGDFEWSR 276


>gb|EMJ23674.1| hypothetical protein PRUPE_ppa009776mg [Prunus persica]
          Length = 278

 Score =  311 bits (796), Expect = 5e-82
 Identities = 155/249 (62%), Positives = 193/249 (77%), Gaps = 13/249 (5%)
 Frame = -1

Query: 1034 TKNAPLFATRRGNHSKSISFNVKSQYLKPQEP----QQKFSTYDTPLSSQPGQ------- 888
            +  A +F+T     + S+S + K   LK ++     QQ+ ST   P    P         
Sbjct: 30   SSRARVFSTNSFGFAPSLSSSRKRLSLKCRQSEYFDQQRASTASAPNKPSPPAPQTPAGG 89

Query: 887  --LPPRVYVGYSVYKGKAALTAEPRSPEFSPLGSGAFKLSKEGFVLLQFAPATGVRQYDW 714
              LPPR +VG+S+YKGKAALT EP++PEF+ L SGAFKLS+EGFVLLQFAPA GVR YDW
Sbjct: 90   TGLPPRFFVGHSIYKGKAALTVEPKAPEFTALDSGAFKLSREGFVLLQFAPAAGVRVYDW 149

Query: 713  GRKQVFSLSVTEIGNIISLGARDSCEFFHDPNKGRSDEGKVRKVLKVEPLPDGSGHFFNL 534
             RKQVFSLSVTEIG+++ LG+++S EFFHDP KG+SDEGKVRKVLKVEPLPDGSGHFFNL
Sbjct: 150  SRKQVFSLSVTEIGSLVCLGSKESIEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNL 209

Query: 533  SVQNKLANLDESIYIPITKAEFAVLVSSFNFIIPYLLGWHTFANTMKPEDANRVNSANPR 354
            SVQNKL NLDES+YIPIT+AEFAVL S+FNFI+PY+LGWH +AN++KPED++R+N+++ R
Sbjct: 210  SVQNKLINLDESVYIPITRAEFAVLKSAFNFILPYILGWHAYANSIKPEDSSRMNNSSSR 269

Query: 353  SSVDFEWNR 327
               DFEW+R
Sbjct: 270  YGGDFEWSR 278