BLASTX nr result

ID: Rehmannia23_contig00008819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00008819
         (333 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004306169.1| PREDICTED: uncharacterized protein LOC101307...    52   4e-08
ref|XP_004292086.1| PREDICTED: uncharacterized protein LOC101295...    49   6e-08
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    46   3e-06

>ref|XP_004306169.1| PREDICTED: uncharacterized protein LOC101307720 [Fragaria vesca
           subsp. vesca]
          Length = 326

 Score = 51.6 bits (122), Expect(2) = 4e-08
 Identities = 29/85 (34%), Positives = 43/85 (50%)
 Frame = -1

Query: 255 FHRRCQIRNGRSRIQGLMVDGSYTEDPVALGNHIISFYTDLFADTGQTTSDYTLVDHLIS 76
           FH   +IR  RS I  L +     +D   L +H++  +T  F D G    +  LV+++I 
Sbjct: 94  FHTLAKIRRARSFITSLCIGNDLVDDVNILRSHVVEHFTTAFMDDG-NIRETGLVENVIP 152

Query: 75  PIVSMVDNALLTAIPSESEVKEAAF 1
            +VS  +N  L AIP+  EVK   F
Sbjct: 153 SVVSYSENDSLLAIPTADEVKNVVF 177



 Score = 31.2 bits (69), Expect(2) = 4e-08
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 332 LLMQSEFLQQKSRSDWLKDGDRNTSF 255
           L +Q  F   K R  W+K+GDRNTS+
Sbjct: 68  LSIQENFWADKVRVRWVKEGDRNTSY 93


>ref|XP_004292086.1| PREDICTED: uncharacterized protein LOC101295596 [Fragaria vesca
           subsp. vesca]
          Length = 370

 Score = 49.3 bits (116), Expect(2) = 6e-08
 Identities = 26/76 (34%), Positives = 42/76 (55%)
 Frame = -1

Query: 255 FHRRCQIRNGRSRIQGLMVDGSYTEDPVALGNHIISFYTDLFADTGQTTSDYTLVDHLIS 76
           FH   + R  RS I  L       +DP+ + NHI+++YTDLFA+      D  L+  +I 
Sbjct: 295 FHAMFRARRARSSITLLRDGNQVYQDPLTIQNHIVAYYTDLFANHAD-YCDTGLISRVIP 353

Query: 75  PIVSMVDNALLTAIPS 28
            +++  +N  LT++PS
Sbjct: 354 SLITDDENMSLTSVPS 369



 Score = 33.1 bits (74), Expect(2) = 6e-08
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 332 LLMQSEFLQQKSRSDWLKDGDRNTSF 255
           L +Q  FL++KSR  W+ +GD NT+F
Sbjct: 269 LRLQELFLKEKSRLSWISEGDLNTTF 294


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 46.2 bits (108), Expect(2) = 3e-06
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = -1

Query: 255 FHRRCQIRNGRSRIQGLM-VDGSYTEDPVALGNHIISFYTDLFADTGQTTSDYTLVDHLI 79
           FH   + R  ++R+  +  ++G    +   +   I  ++  +F  T ++  D+++VD  I
Sbjct: 250 FHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIF--TSESDGDFSVVDEAI 307

Query: 78  SPIVSMVDNALLTAIPSESEVKEAAF 1
            P+VS  DN  LT IP++ EVK+A F
Sbjct: 308 EPMVSQGDNDFLTRIPNDEEVKDAVF 333



 Score = 30.0 bits (66), Expect(2) = 3e-06
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 326 MQSEFLQQKSRSDWLKDGDRNTSF 255
           ++ +F +Q+SR  WL  GDRNT +
Sbjct: 226 LEEQFWKQRSRVLWLHSGDRNTGY 249


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