BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00008689
         (924 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY00082.1| DNA/RNA polymerases superfamily protein [Theobrom...    75   4e-27
gb|ADB85337.1| putative retrotransposon protein [Phyllostachys e...    75   2e-25
gb|ABD28293.1| RNA-directed DNA polymerase (Reverse transcriptas...    74   3e-25
ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355...    74   3e-25
emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]            70   4e-25
gb|AAS07330.1| putative polyprotein [Oryza sativa Japonica Group...    65   8e-25
emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa Japonica Group]          70   1e-24
dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa I...    69   1e-24
emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]                 69   2e-24
gb|AAQ56486.1| putative polyprotein [Oryza sativa Japonica Group]      69   3e-24
gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subc...    69   4e-24
gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subc...    69   5e-24
emb|CAH65747.1| OSIGBa0102B11.1 [Oryza sativa Indica Group]            69   6e-24
gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group...    69   8e-24
emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group] gi...    65   1e-23
emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]            65   1e-23
emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]         69   3e-23
emb|CAD39386.2| OSJNBb0016B03.11 [Oryza sativa Japonica Group]         69   3e-23
gb|ABA98792.2| retrotransposon protein, putative, Ty3-gypsy subc...    68   9e-23
gb|AAP50978.1| putative polyprotein [Oryza sativa Japonica Group...    69   8e-10

>gb|EOY00082.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1515

 Score = 74.7 bits (182), Expect(3) = 4e-27
 Identities = 44/97 (45%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+S  PYRM P EL ELK          V    +   G  +           F  KK
Sbjct: 574 GTAPISIPPYRMAPTELKELK----------VQLQELVDKGFIRPSISPWGAPILFVKKK 623

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           +GT+R+ ID R+LN++TIKNKYPLPR +DLFDQL GA
Sbjct: 624 DGTLRLCIDCRQLNRMTIKNKYPLPRIDDLFDQLQGA 660



 Score = 50.8 bits (120), Expect(3) = 4e-27
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = -1

Query: 495 FVASE*SAPRCISN--KDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFL 322
           FV      P C+ +  K  + V+K     S YL  VI TS  E  + ++ +V E+ + F 
Sbjct: 497 FVGKRRVLPSCVISAIKASKLVQKGY---STYLAYVIDTSKGEPKLEDVSIVSEFPDVFP 553

Query: 321 ENLPGIPLNRPVEFTIDLIPGAA 253
           ++LPG+P +R +EF IDL+PG A
Sbjct: 554 DDLPGLPPDRELEFPIDLLPGTA 576



 Score = 43.5 bits (101), Expect(3) = 4e-27
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -3

Query: 676 CGVDFVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
           CGV         DL  + I DFD+ILGMDWL  ++AN++C ++
Sbjct: 441 CGVRVGEEEFRGDLIPLEILDFDLILGMDWLTAHRANVDCFRK 483


>gb|ADB85337.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1053

 Score = 75.5 bits (184), Expect(3) = 2e-25
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKK--FSCKNI*ILVPFDRMCRLGKRQFYLKKNGTMRMFID 89
           G+ P+S  PYRM   EL E+KK     K    + P           F  KK+ +MRM +D
Sbjct: 121 GTAPISKRPYRMPANELAEMKKQIMELKQKGYIRPSSSPWG-APVLFVKKKDNSMRMCVD 179

Query: 88  YRELNKLTIKNKYPLPRTEDLFDQLNGAN 2
           YR LN++TIKNKYPLPR +DLFDQL GA+
Sbjct: 180 YRSLNEVTIKNKYPLPRIDDLFDQLKGAS 208



 Score = 49.7 bits (117), Expect(3) = 2e-25
 Identities = 28/70 (40%), Positives = 43/70 (61%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           ++NK G  VE K    +G     ++TS+ E  + +I VV+E+ + F + LPG+P +R V 
Sbjct: 56  LTNKQGISVEFKPKTSTGG--RSVLTSLKELKLEDIPVVQEFPDVFPDELPGMPPDRDVV 113

Query: 282 FTIDLIPGAA 253
           F IDL+PG A
Sbjct: 114 FIIDLVPGTA 123



 Score = 38.1 bits (87), Expect(3) = 2e-25
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 670 VDFVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
           ++  G+   ADL V+  +  D+ILGMDWL K +  +NC  R
Sbjct: 12  LEISGVTFLADLIVLHSQGLDVILGMDWLAKNQGQINCANR 52


>gb|ABD28293.1| RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger,
           CCHC-type; Peptidase aspartic, active site;
           Retrotransposon gag protein [Medicago truncatula]
          Length = 912

 Score = 73.6 bits (179), Expect(3) = 3e-25
 Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKK-----FSCKNI*ILV-PFDRMCRLGKRQFYLKKNGTMR 101
           G+ PVS APYRM   EL ELKK        K +   V P+     L K     KK+G+MR
Sbjct: 511 GTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVK-----KKDGSMR 565

Query: 100 MFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + IDYR+LNK+TIKN+YPLPR +DL DQL GA
Sbjct: 566 LCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGA 597



 Score = 46.6 bits (109), Expect(3) = 3e-25
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           + NTP + + DT   H FI FD  +     ++ +          + +++T+LV   C + 
Sbjct: 332 ISNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLS 391

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G   E DL  + +   D+ILGM+WL      +NC  +
Sbjct: 392 MFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK 430



 Score = 42.7 bits (99), Expect(3) = 3e-25
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
 Frame = -1

Query: 501 NCFVAS-------E*SAPRCISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEIL-VV 346
           NCF  S       E S    +S K  + +E+  I++   +  +   SI+ + +++ L VV
Sbjct: 426 NCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATL---SIENQAVIDRLPVV 482

Query: 345 REYTNAFLENLPGIPLNRPVEFTIDLIPG 259
            E+   F + +P +P  R VEF+IDL+PG
Sbjct: 483 CEFPEVFPDEIPDVPPEREVEFSIDLVPG 511


>ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355506807|gb|AES87949.1|
           Pol polyprotein [Medicago truncatula]
          Length = 745

 Score = 73.6 bits (179), Expect(3) = 3e-25
 Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKK-----FSCKNI*ILV-PFDRMCRLGKRQFYLKKNGTMR 101
           G+ PVS APYRM   EL ELKK        K +   V P+     L K     KK+G+MR
Sbjct: 522 GTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVK-----KKDGSMR 576

Query: 100 MFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + IDYR+LNK+TIKN+YPLPR +DL DQL GA
Sbjct: 577 LCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGA 608



 Score = 46.6 bits (109), Expect(3) = 3e-25
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           + NTP + + DT   H FI FD  +     ++ +          + +++T+LV   C + 
Sbjct: 343 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLS 402

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G   E DL  + +   D+ILGM+WL      +NC  +
Sbjct: 403 MFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK 441



 Score = 42.7 bits (99), Expect(3) = 3e-25
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
 Frame = -1

Query: 501 NCFVAS-------E*SAPRCISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEIL-VV 346
           NCF  S       E S    +S K  + +E+  I++   +  +   SI+ + +++ L VV
Sbjct: 437 NCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMPTI---SIENQAVIDRLPVV 493

Query: 345 REYTNAFLENLPGIPLNRPVEFTIDLIPG 259
            E+   F + +P +P  R VEF+IDL+PG
Sbjct: 494 CEFPEVFPDEIPDVPPEREVEFSIDLVPG 522


>emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]
          Length = 1352

 Score = 69.7 bits (169), Expect(3) = 4e-25
 Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
 Frame = -3

Query: 271 FDSGSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FY 125
           F  G+ P+   PYRM   EL E+K+            D + + G  +           F 
Sbjct: 487 FVPGTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFV 536

Query: 124 LKKNGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            KK+ T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 537 EKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 576



 Score = 50.8 bits (120), Expect(3) = 4e-25
 Identities = 22/57 (38%), Positives = 38/57 (66%)
 Frame = -1

Query: 429 KIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFTIDLIPG 259
           +++I+       + + +++ T+ EI VVREY + FL++LPG+P  R +EF ID +PG
Sbjct: 434 RVVIVHALSSESLRSRLNQITLEEIPVVREYPDVFLDDLPGMPPKRDIEFRIDFVPG 490



 Score = 42.0 bits (97), Expect(3) = 4e-25
 Identities = 30/99 (30%), Positives = 45/99 (45%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V   P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 327 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQR-SPSVRIE 385

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 386 IKGVPFLANLILLESKDIDVILGMDWLARYKGVIDCANR 424


>gb|AAS07330.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108710255|gb|ABF98050.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1294

 Score = 65.1 bits (157), Expect(3) = 8e-25
 Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 492 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 541

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKN YPLPR  DLFDQL GA
Sbjct: 542 DHTQRMCVDYRALNDVTIKNIYPLPRINDLFDQLKGA 578



 Score = 51.6 bits (122), Expect(3) = 8e-25
 Identities = 24/68 (35%), Positives = 43/68 (63%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + +S+++ T+ EI +VR+Y + F +NLPG+P  R +E
Sbjct: 430 LTSNDGQ-----VVTVHALTSEPLRSSLNQITLEEIPIVRDYPDVFPDNLPGMPPKRDIE 484

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 485 FRIDLVPG 492



 Score = 44.7 bits (104), Expect(3) = 8e-25
 Identities = 30/99 (30%), Positives = 47/99 (47%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S+   +    ++
Sbjct: 329 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSSQR-SPSVRIE 387

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 388 IQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANR 426


>emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa Japonica Group]
          Length = 1528

 Score = 70.1 bits (170), Expect(3) = 1e-24
 Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F+ KK
Sbjct: 653 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSLWGAPVIFWEKK 702

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 703 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 739



 Score = 48.9 bits (115), Expect(3) = 1e-24
 Identities = 20/57 (35%), Positives = 39/57 (68%)
 Frame = -1

Query: 429 KIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFTIDLIPG 259
           +++ ++      + + +++ T+ EI +VREY++ F ++LPG+P  R +EF IDL+PG
Sbjct: 597 RVVTVNALSSESLRSRLNQITLEEIPIVREYSDVFPDDLPGMPPKRDIEFRIDLVPG 653



 Score = 41.6 bits (96), Expect(3) = 1e-24
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 490 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPGNQALSLQR-SPSVRIE 548

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 549 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 587


>dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
          Length = 1475

 Score = 68.9 bits (167), Expect(3) = 1e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 535 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 584

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 585 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 621



 Score = 49.3 bits (116), Expect(3) = 1e-24
 Identities = 23/68 (33%), Positives = 42/68 (61%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +E
Sbjct: 473 LTSNDGQ-----VVTVHALSTESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIE 527

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 528 FRIDLVPG 535



 Score = 42.4 bits (98), Expect(3) = 1e-24
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 372 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 430

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 431 IQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANR 469


>emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]
          Length = 1685

 Score = 68.9 bits (167), Expect(3) = 2e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262  GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
            G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 745  GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 794

Query: 115  NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 795  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 831



 Score = 48.1 bits (113), Expect(3) = 2e-24
 Identities = 20/57 (35%), Positives = 37/57 (64%)
 Frame = -1

Query: 429 KIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFTIDLIPG 259
           +++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +EF IDL+PG
Sbjct: 689 RVVTVHAMSTESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPG 745



 Score = 42.7 bits (99), Expect(3) = 2e-24
 Identities = 29/99 (29%), Positives = 47/99 (47%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 582 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVKIE 640

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K+ ++C  R
Sbjct: 641 IQGVPFLANLILLKSKDLDVILGMDWLARHKSVIDCANR 679


>gb|AAQ56486.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 2032

 Score = 68.9 bits (167), Expect(3) = 3e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262  GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
            G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 1166 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 1215

Query: 115  NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 1216 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 1252



 Score = 48.1 bits (113), Expect(3) = 3e-24
 Identities = 23/68 (33%), Positives = 42/68 (61%)
 Frame = -1

Query: 462  ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
            I++ DG     +++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +E
Sbjct: 1104 ITSNDG-----RVVTVHALSSEPLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIE 1158

Query: 282  FTIDLIPG 259
            F IDL+PG
Sbjct: 1159 FRIDLVPG 1166



 Score = 42.4 bits (98), Expect(3) = 3e-24
 Identities = 30/99 (30%), Positives = 45/99 (45%)
 Frame = -3

Query: 844  VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
            V   P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 1003 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 1061

Query: 664  FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
              G+   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 1062 IQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANR 1100


>gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1751

 Score = 68.9 bits (167), Expect(3) = 4e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262  GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
            G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 811  GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 860

Query: 115  NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 861  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 897



 Score = 49.3 bits (116), Expect(3) = 4e-24
 Identities = 21/57 (36%), Positives = 38/57 (66%)
 Frame = -1

Query: 429 KIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFTIDLIPG 259
           +++ +       + + +++ T+ EI VVREY++ F ++LPG+P  R +EF IDL+PG
Sbjct: 755 RVVTVHALSSETLRSRLNQITLEEIPVVREYSDVFPDDLPGMPPKRDIEFRIDLVPG 811



 Score = 40.8 bits (94), Expect(3) = 4e-24
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -3

Query: 670 VDFVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
           ++  G+   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 705 IEIQGIPFLANLILLESKDLDVILGMDWLARYKGVIDCANR 745


>gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1473

 Score = 68.9 bits (167), Expect(3) = 5e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 533 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 582

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 583 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 619



 Score = 49.3 bits (116), Expect(3) = 5e-24
 Identities = 23/68 (33%), Positives = 43/68 (63%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + + +++ T+ EI +VREY++ F ++LPG+P  R +E
Sbjct: 471 LTSNDGQ-----VVTVHALSSESLRSRLNQITLEEIPIVREYSDVFPDDLPGMPPKRDIE 525

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 526 FRIDLVPG 533



 Score = 40.4 bits (93), Expect(3) = 5e-24
 Identities = 29/99 (29%), Positives = 45/99 (45%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V   P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 370 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 428

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 467


>emb|CAH65747.1| OSIGBa0102B11.1 [Oryza sativa Indica Group]
          Length = 1601

 Score = 68.9 bits (167), Expect(3) = 6e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262  GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
            G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 781  GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPIIFVEKK 830

Query: 115  NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 831  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 867



 Score = 48.1 bits (113), Expect(3) = 6e-24
 Identities = 20/57 (35%), Positives = 37/57 (64%)
 Frame = -1

Query: 429 KIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFTIDLIPG 259
           +++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +EF IDL+PG
Sbjct: 725 RVVTIHAMSTESLRSRLNQITLGEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPG 781



 Score = 41.2 bits (95), Expect(3) = 6e-24
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 618 VNSVPATVLFDSGATHSFLSMRFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 676

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 677 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 715


>gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709242|gb|ABF97037.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1436

 Score = 68.9 bits (167), Expect(3) = 8e-24
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 534 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 583

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 584 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 620



 Score = 45.4 bits (106), Expect(3) = 8e-24
 Identities = 21/68 (30%), Positives = 41/68 (60%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           ++N DG     +++ +       + +S+++  + EI + +EY + F ++LPG+P  R +E
Sbjct: 472 LTNNDG-----RVVTVHALSSESLRSSLNQIALEEIPIEQEYPDVFPDDLPGMPPKRDIE 526

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 527 FRIDLVPG 534



 Score = 43.5 bits (101), Expect(3) = 8e-24
 Identities = 30/99 (30%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 371 VNSVPATVLFDSGATHSFLSMGFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 429

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 430 IQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANR 468


>emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group]
           gi|38343993|emb|CAD40358.2| OSJNBa0093P23.4 [Oryza
           sativa Japonica Group]
          Length = 1543

 Score = 65.1 bits (157), Expect(3) = 1e-23
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+  +   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 607 GTTLIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 656

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 657 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 693



 Score = 50.4 bits (119), Expect(3) = 1e-23
 Identities = 24/71 (33%), Positives = 43/71 (60%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +E
Sbjct: 545 LTSNDGQ-----VVTVHALSSEFLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIE 599

Query: 282 FTIDLIPGAAL 250
           F IDL+PG  L
Sbjct: 600 FRIDLVPGTTL 610



 Score = 42.0 bits (97), Expect(3) = 1e-23
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 444 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 502

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 503 IQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 541


>emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]
          Length = 1469

 Score = 65.1 bits (157), Expect(3) = 1e-23
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+  +   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 533 GTTLIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 582

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 583 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 619



 Score = 50.4 bits (119), Expect(3) = 1e-23
 Identities = 24/71 (33%), Positives = 43/71 (60%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +E
Sbjct: 471 LTSNDGQ-----VVTVHALSSEFLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIE 525

Query: 282 FTIDLIPGAAL 250
           F IDL+PG  L
Sbjct: 526 FRIDLVPGTTL 536



 Score = 42.0 bits (97), Expect(3) = 1e-23
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 428

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
             G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 429 IQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 467


>emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]
          Length = 1581

 Score = 68.9 bits (167), Expect(3) = 3e-23
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 641 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 690

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 691 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 727



 Score = 48.1 bits (113), Expect(3) = 3e-23
 Identities = 22/68 (32%), Positives = 42/68 (61%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           ++N DG     +++ +       + +S+++  + EI +V+EY + F ++LPG+P  R +E
Sbjct: 579 LTNNDG-----RVVTVHALSSESLRSSLNQIALEEIPIVQEYADVFPDDLPGMPPKRDIE 633

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 634 FRIDLVPG 641



 Score = 38.9 bits (89), Expect(3) = 3e-23
 Identities = 28/99 (28%), Positives = 45/99 (45%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 478 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 536

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
              +   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 537 IQEVPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 575


>emb|CAD39386.2| OSJNBb0016B03.11 [Oryza sativa Japonica Group]
          Length = 1374

 Score = 68.9 bits (167), Expect(3) = 3e-23
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 530 GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 579

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 580 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 616



 Score = 48.1 bits (113), Expect(3) = 3e-23
 Identities = 23/66 (34%), Positives = 41/66 (62%)
 Frame = -1

Query: 456 NKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVEFT 277
           +KDG     +++ +       + + +++ T+ EI +VREY + F ++LPG+P  R +EF 
Sbjct: 470 SKDG-----RVVTVHAMSSESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFR 524

Query: 276 IDLIPG 259
           IDL+PG
Sbjct: 525 IDLVPG 530



 Score = 38.9 bits (89), Expect(3) = 3e-23
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 670 VDFVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
           ++  G+   A+L ++  KD D+ILGMDWL ++K  ++C  R
Sbjct: 424 IEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANR 464


>gb|ABA98792.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1631

 Score = 68.2 bits (165), Expect(3) = 9e-23
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262  GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
            G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 812  GTTPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 861

Query: 115  NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
            + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 862  DHTQRMCMDYRALNDVTIKNKYPLPRIDDLFDQLKGA 898



 Score = 47.8 bits (112), Expect(3) = 9e-23
 Identities = 22/68 (32%), Positives = 43/68 (63%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++ +       + +S+++ T+ EI ++R+Y + F ++LPG+P  R +E
Sbjct: 750 LTSNDGQ-----VVTVHALPSEPLRSSLNQITLEEIPILRDYPDVFPDDLPGMPPKRDIE 804

Query: 282 FTIDLIPG 259
           F IDL+PG
Sbjct: 805 FRIDLVPG 812



 Score = 38.5 bits (88), Expect(3) = 9e-23
 Identities = 28/102 (27%), Positives = 47/102 (46%)
 Frame = -3

Query: 853 LWDVGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**C 674
           ++ V + P  VLFD+   HS +   F       I  L      S      +S+   +   
Sbjct: 646 MFPVNSVPATVLFDSGTTHSILSMSFAGNHGMEIEDLRRPLMISTPSNQALSSQR-SPSV 704

Query: 673 GVDFVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
            ++  G+   A+L ++  K  ++ILGMDWL +YK  ++C  R
Sbjct: 705 RIEIQGVPFLANLILLESKYLEVILGMDWLARYKGVIDCANR 746


>gb|AAP50978.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108710193|gb|ABF97988.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1564

 Score = 49.7 bits (117), Expect(2) = 8e-10
 Identities = 29/92 (31%), Positives = 51/92 (55%)
 Frame = -1

Query: 462 ISNKDGQDVEKKIIILSGYLVNVIVTSIDEKTIMEILVVREYTNAFLENLPGIPLNRPVE 283
           +++ DGQ     ++I+       + +S+++ T+ EI +VREY + F ++LPG+P  R +E
Sbjct: 613 LTSNDGQ-----VVIVHALSSESLRSSLNQMTLEEIPIVREYPDVFPDDLPGMPPKRDIE 667

Query: 282 FTIDLIPGAALYRTHHIEWYLRSFRNLKNSVA 187
           F IDL+ G        I  + R +R   N +A
Sbjct: 668 FRIDLVLGT-------IPIHKRPYRMAANELA 692



 Score = 40.8 bits (94), Expect(2) = 8e-10
 Identities = 29/99 (29%), Positives = 45/99 (45%)
 Frame = -3

Query: 844 VGNTPTLVLFDTDIMHSFIYFDF*AKSNP*ITLLTTH*K*SPHPE*TISTNLVN**CGVD 665
           V + P  VLFD+   HSF+   F       +  L      S      +S    +    ++
Sbjct: 512 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIE 570

Query: 664 FVGMGLEADLHVIMIKDFDIILGMDWLNKYKANLNCHKR 548
              +   A+L ++  KD D+ILGMDWL +YK  ++C  R
Sbjct: 571 IQEVTFLANLILLESKDLDVILGMDWLARYKGVIDCANR 609



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
 Frame = -3

Query: 262 GSCPVSNAPYRMVPKEL*ELKKFSCKNI*ILVPFDRMCRLGKRQ-----------FYLKK 116
           G+ P+   PYRM   EL E+K+            D + + G  +           F  KK
Sbjct: 675 GTIPIHKRPYRMAANELAEVKR----------QVDDLLQKGYIRPSSSPWGAPVIFVEKK 724

Query: 115 NGTMRMFIDYRELNKLTIKNKYPLPRTEDLFDQLNGA 5
           + T RM +DYR LN +TIKNKYPLPR +DLFDQL GA
Sbjct: 725 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 761