BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00008543
         (1278 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]   151   6e-34
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...   143   2e-31
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ...   139   3e-30
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    137   7e-30
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        137   1e-29
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   134   8e-29
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   132   3e-28
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]   129   3e-27
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   128   6e-27
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   126   2e-26
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   126   2e-26
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   126   2e-26
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   126   2e-26
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...   124   1e-25
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   123   1e-25
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           123   2e-25
gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]   122   2e-25
emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera]   122   4e-25
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   122   4e-25
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   121   7e-25

>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score =  151 bits (381), Expect = 6e-34
 Identities = 102/342 (29%), Positives = 175/342 (51%), Gaps = 8/342 (2%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITN--TYVDTDTKEIKAETDEYAY 445
            M    +++E F GK DF +W+ KM+ +L+QQ +  A+        T  ++ K E  E A+
Sbjct: 1    MGTVKFDVEKFTGKNDFGLWRLKMRALLVQQGLQDALLGEKNLPXTMQEKHKIELLEKAH 60

Query: 446  SSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDE 625
             +IIL+L D+ LR+V K KSA +L  KL+ LY   SL +               +  ++E
Sbjct: 61   GAIILSLGDTXLREVAKAKSAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEE 120

Query: 626  NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLK 805
            +LD F K+I D+K       ++   I+LL ++  SY+++K AI YGRD +T D V + L 
Sbjct: 121  HLDHFNKIILDLKNIDIAVSNEDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILH 180

Query: 806  SKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
            ++EL  +  +  ++  GE +++RG+S+ R   ++K +N ++++ +               
Sbjct: 181  ARELHKQ--EESKEELGEGLNIRGKSKKR--EKKKGNNSKSRSKS------------KTK 224

Query: 986  XXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMV------TGICDVPI 1147
               C+ C + GH+ ++CP+ + N  +          + N GD  M+       G+ +V  
Sbjct: 225  KFKCFICHKEGHFKKDCPDMRQNTXKK---------TMNEGDATMILDGYDNAGVLNVAE 275

Query: 1148 VNSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
            V+S         EW++DS C+FHM P K  F ++KE     V
Sbjct: 276  VDS-------GKEWILDSGCSFHMCPIKAWFEDFKEANGGHV 310


>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  143 bits (360), Expect = 2e-31
 Identities = 86/290 (29%), Positives = 147/290 (50%)
 Frame = +2

Query: 404  DTKEIKAETDEYAYSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXX 583
            + ++ + + DE A   I +N+ D VLR +   K+A E W  L +LY   SLP+       
Sbjct: 32   EEEKARIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLK 91

Query: 584  XXXXXXDLNKDVDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYG 763
                    +K ++EN+D F K+I D+     +  D+   I++L+A+P+SY  +K  +KYG
Sbjct: 92   VYNYRMQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYG 151

Query: 764  RDSITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNX 943
            R+ I LD V++  KSKEL+L+ + GG +  GE ++VRG+SQ R  +  K    +      
Sbjct: 152  REGIKLDDVISAAKSKELELRDSSGGSRPVGEGLYVRGKSQARGSDGPKSTEGKK----- 206

Query: 944  XXXXXXXXXXXXXXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMV 1123
                             C+ CG+ GH+ R+C  K   +N++N     A   ++A D+   
Sbjct: 207  ----------------VCWICGKEGHFKRQC-YKWLEKNKANGAGETALVKDDAQDL--- 246

Query: 1124 TGICDVPIVNSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
             G+    +  ++      + EW++D+ C+FHM+P K    ++ E K+  V
Sbjct: 247  VGLVASEV--NMSEGKDDQEEWIMDTGCSFHMTPRKEYLMDFVEAKSGKV 294


>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
            gi|7267743|emb|CAB78169.1| putative retrotransposon
            [Arabidopsis thaliana]
          Length = 1230

 Score =  139 bits (350), Expect = 3e-30
 Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 27/355 (7%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTYVDTDTKEIKAETDEY---- 439
            M+     +E F+G  D+++W++K+   +    +  A+  T   +D  E + E  E     
Sbjct: 1    MSSARVEMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGD 60

Query: 440  -----------AYSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXX 586
                       A S+I+L++SD VLRK  K+K+A  + + L +LY   +LP+        
Sbjct: 61   KEALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKL 120

Query: 587  XXXXXDLNKDVDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKY-- 760
                   N  V+ N+D F +LI D++ T     D+   I+LL ++P+ +  +K  +KY  
Sbjct: 121  YSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGS 180

Query: 761  GRDSITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSN 940
            GR ++++D VV  + SKEL+L  NK   +   E ++V+ + + R  ++QK   ++ ++ +
Sbjct: 181  GRTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRS 240

Query: 941  XXXXXXXXXXXXXXXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQAN---------LAST 1093
                              C+ CGE GH+   CPNK   QN+  DQA+           +T
Sbjct: 241  -----------RSKGWKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNT 289

Query: 1094 SENAGDIFMVTGICDVPIVNSVHSSTV-CENEWLIDSACTFHMSPFKNLFSNYKE 1255
            SE +G            +  ++HS+ V   NEW++D+ C +HM+  K  F    E
Sbjct: 290  SEGSG----------YYVSEALHSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSE 334


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  137 bits (346), Expect = 7e-30
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 9/335 (2%)
 Frame = +2

Query: 272  MAVPSYNLEPFNG-KTDFSIWQQKMKGILIQQKVYKAITNTYVDTDTKEIK--AETDEYA 442
            M+   Y +  FNG K  FS+WQ++MK +LIQQ ++KA+       ++ +++   E DE A
Sbjct: 1    MSGVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKA 60

Query: 443  YSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVD 622
             S+I L+L+D V+  +  ++SA  +W KL+ LY   +L +             D   +  
Sbjct: 61   ASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFL 120

Query: 623  ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGL 802
             +L+V   LI  +   G K  ++   IVLLN++P SY  + + I +G+DSI L  V + L
Sbjct: 121  SHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSAL 180

Query: 803  KSKELDLKVNKGGRQNSGEVM--HVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXX 976
               E   K+ K   +N G+V     RGRS  R           + N              
Sbjct: 181  LLNE---KMRK-KPENHGQVFITESRGRSYQR----------SSSNYGRSGARGKSKVRS 226

Query: 977  XXXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNS 1156
                  CYNC + GH+ R+CPN K  + +S+ Q N  +T+       MV    DV ++ +
Sbjct: 227  KSKARNCYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAA------MVQNNDDVVLLIN 280

Query: 1157 VHSSTV----CENEWLIDSACTFHMSPFKNLFSNY 1249
                 +     E+EW++D+A ++H +P ++LF  Y
Sbjct: 281  EEEECMHLAGTESEWVVDTAASYHATPVRDLFCRY 315


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  137 bits (345), Expect = 1e-29
 Identities = 88/332 (26%), Positives = 162/332 (48%), Gaps = 5/332 (1%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTYVDTDT----KEIKAETDEY 439
            M++P + +E F    DFS+W+ KMK +L+ Q +  A+    ++  T     + + +    
Sbjct: 1    MSLPRHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNR 60

Query: 440  AYSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDV 619
            A+S++IL+L DS+LR++ ++K+A  +W+K++ L  + SL                    +
Sbjct: 61   AHSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTI 120

Query: 620  DENLDVFTKLIQDIK-LTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVN 796
             +++D F K+I D++ +   K  D+     LL+++P+SY      + YGR ++TL+ V  
Sbjct: 121  QDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKA 180

Query: 797  GLKSKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXX 976
             L SKE  ++ N     ++GE +  R          +K  + +N+N              
Sbjct: 181  SLSSKE--IQKNCELETSNGEGLMAR---------TEKKKDQKNKNQGKGHGKNQETADK 229

Query: 977  XXXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNS 1156
                  C+ C + GHYIR+C  KK  ++Q     + A  S++  D +    +        
Sbjct: 230  KKKKRKCFYCRKEGHYIRDCFEKKKKESQEK-SGDAAVASDDGSDGYQSADLL------- 281

Query: 1157 VHSSTVCENEWLIDSACTFHMSPFKNLFSNYK 1252
            V S++  + +W+IDS C+FH+ P K LF  Y+
Sbjct: 282  VASNSNTKGQWVIDSGCSFHLCPEKTLFYKYE 313


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  134 bits (337), Expect = 8e-29
 Identities = 95/332 (28%), Positives = 153/332 (46%), Gaps = 6/332 (1%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKA--ITNTYVDTDTKEIKAETDEYAY 445
            M+   Y +  FNG   FS WQ++M+ +LIQQ ++K   + +   DT   E  A+ DE A 
Sbjct: 1    MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 446  SSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDE 625
            S+I L+LSD V+  +  + +A+ +W +L+ LY   +L +                 +   
Sbjct: 61   SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120

Query: 626  NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLK 805
            +L+VF  LI  +   G K  ++   I+LLN++P SY ++ + I +G+ +I L  V + L 
Sbjct: 121  HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180

Query: 806  SKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
              E   K  K   Q    +   RGRS  R  N       + ++ N               
Sbjct: 181  LNEKMRK--KPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKN----------RSKSR 228

Query: 986  XXXCYNCGEVGHYIRECPN-KKG---NQNQSNDQANLASTSENAGDIFMVTGICDVPIVN 1153
               CYNC + GH+ R+CPN +KG      Q ND    A    N   +  +          
Sbjct: 229  VRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFIN-----EEEE 283

Query: 1154 SVHSSTVCENEWLIDSACTFHMSPFKNLFSNY 1249
             +H S   E+EW++D+A + H +P ++LF  Y
Sbjct: 284  CMHLSGP-ESEWVVDTAASHHATPVRDLFCRY 314


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  132 bits (332), Expect = 3e-28
 Identities = 82/263 (31%), Positives = 142/263 (53%), Gaps = 2/263 (0%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITN--TYVDTDTKEIKAETDEYAY 445
            M    +++E F GK DF + + KM+ +L+QQ +  A+        T  ++ K E  E A+
Sbjct: 1    MGTAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAH 60

Query: 446  SSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDE 625
            S+IIL+L D+VLR+  K KSA E+W KL+ LY   SL +                  ++ 
Sbjct: 61   SAIILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEX 120

Query: 626  NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLK 805
            +LD F K+I D++       D+   I+LL ++  SY+++K AI YGRDS+T D V + L 
Sbjct: 121  HLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILH 180

Query: 806  SKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
            ++E  L+  +  ++ SGE +++RGRS+ R   ++K  N ++++ +               
Sbjct: 181  ARE--LQKQEESKEESGEGLNIRGRSEKR---EKKGKNSKSRSKS------------KTK 223

Query: 986  XXXCYNCGEVGHYIRECPNKKGN 1054
               C+ C + GH+ ++CP+++ N
Sbjct: 224  KFKCFICHKEGHFKKDCPDRRQN 246


>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
          Length = 950

 Score =  129 bits (323), Expect = 3e-27
 Identities = 94/339 (27%), Positives = 162/339 (47%), Gaps = 7/339 (2%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITN--TYVDTDTKEIKAETDEYAY 445
            M+   + +E FNG  DF++W+ KMK +L+QQK  +AI    T     T   K E    A+
Sbjct: 1    MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVVSRAH 60

Query: 446  SSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDE 625
            S+I+L+L+D VLR+V  + +A  LW K +  Y + SL +                  V +
Sbjct: 61   SAILLSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQVRD 120

Query: 626  NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLK 805
            +L+ F ++I D+   G K  ++   ++LL ++P SY +    + YGR+SI+ + V + L+
Sbjct: 121  HLNNFNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRBSISXNDVKDALQ 180

Query: 806  SKELDLKVNKGGRQNSGE--VMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXX 979
            SKEL  K+  G  + S E  +   RGRS  R    +     +++ +              
Sbjct: 181  SKELQ-KLVSGSEEGSVETGLTVSRGRSMERNGGGRSKSXSKSKAA-------------- 225

Query: 980  XXXXXCYNCGEVGHYIRECPNKK---GNQNQSNDQANLASTSENAGDIFMVTGICDVPIV 1150
                 C++  E GH+ + CP ++   G  +  N Q  +A       D        DV  V
Sbjct: 226  ---MRCFHXKEKGHFRKNCPQRQKGIGXGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTV 282

Query: 1151 NSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNS 1267
            ++  S+      W++D+  ++HM+  ++LF+ +KE   S
Sbjct: 283  STSSSA----ESWILDTGASYHMAYSRDLFTTFKEWNGS 317


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  128 bits (321), Expect = 6e-27
 Identities = 87/348 (25%), Positives = 169/348 (48%), Gaps = 21/348 (6%)
 Frame = +2

Query: 293  LEPFNGKTDFSIWQQKMK------GIL--------IQQKVYKAITNTYVDTDTKEIKAET 430
            +E  +G+ D+ +W++K+       G+L        I+++   A T++ +     ++  E 
Sbjct: 8    VEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKEK 67

Query: 431  DEYAYSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLN 610
               A S++IL+L + VLRKV K+K+A  +   L +L+   SLP+               +
Sbjct: 68   RGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDS 127

Query: 611  KDVDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTV 790
              ++EN++ F KLI D++       D+   IVLL ++P+ +  +K  +KYG+ ++ LD +
Sbjct: 128  MTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDEI 187

Query: 791  VNGLKSKELDLKVNKGGRQNSGEVMHV--RGRSQYRFDNQQKFDNHQNQNSNXXXXXXXX 964
               ++SK L+L  +    +NS + + V  RGRS+ R  + ++  +     S         
Sbjct: 188  TGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSKSR-------- 239

Query: 965  XXXXXXXXXXCYNCGEVGHYIREC-----PNKKGNQNQSNDQANLASTSENAGDIFMVTG 1129
                      C+ CG+ GH+ ++C      NKKGN ++  + +N+   + +A  + +   
Sbjct: 240  ------EKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVRE- 292

Query: 1130 ICDVPIVNSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
                    S   +   +NEW++D+ C+FHM+P ++ F  + E +   V
Sbjct: 293  -------ESNADNQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRV 333


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  126 bits (317), Expect = 2e-26
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 12/341 (3%)
 Frame = +2

Query: 287  YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTY----VDTDTKEIKAETDEYAYSSI 454
            ++L   N  T FS+WQ KM+GIL Q   Y    + +     +   +EI+   D+ A + I
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK--DQKALALI 60

Query: 455  ILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENLD 634
             L+L + +L++   +K++ ELW KL+ +     L S                  V  ++ 
Sbjct: 61   QLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMA 120

Query: 635  VFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKE 814
             F K++ D+     K  D+   ++LL ++P SY++ +  I   RD +TL  V + L++KE
Sbjct: 121  EFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE 180

Query: 815  LDLKV---NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
              +K+   N G   + GE +HVRGR++ R  N++ +D      S                
Sbjct: 181  -KMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-------- 231

Query: 986  XXXCYNCGEVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIV 1150
               C  C    H I EC   +  + ++        A+ A++ +++GD  +V   C     
Sbjct: 232  ---CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC----- 283

Query: 1151 NSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
                      +EW++DSAC+FH+   +N FS+YK ++   V
Sbjct: 284  ------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDV 318


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  126 bits (317), Expect = 2e-26
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 12/341 (3%)
 Frame = +2

Query: 287  YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTY----VDTDTKEIKAETDEYAYSSI 454
            ++L   N  T FS+WQ KM+GIL Q   Y    + +     +   +EI+   D+ A + I
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK--DQKALALI 60

Query: 455  ILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENLD 634
             L+L + +L++   +K++ ELW KL+ +     L S                  V  ++ 
Sbjct: 61   QLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMA 120

Query: 635  VFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKE 814
             F K++ D+     K  D+   ++LL ++P SY++ +  I   RD +TL  V + L++KE
Sbjct: 121  EFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE 180

Query: 815  LDLKV---NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
              +K+   N G   + GE +HVRGR++ R  N++ +D      S                
Sbjct: 181  -KMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-------- 231

Query: 986  XXXCYNCGEVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIV 1150
               C  C    H I EC   +  + ++        A+ A++ +++GD  +V   C     
Sbjct: 232  ---CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC----- 283

Query: 1151 NSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
                      +EW++DSAC+FH+   +N FS+YK ++   V
Sbjct: 284  ------VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDV 318


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  126 bits (317), Expect = 2e-26
 Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
 Frame = +2

Query: 293 LEPFNGKTDFSIWQQKMKGILIQQKVYKAITNT--YVDTDTKEIKAETDEYAYSSIILNL 466
           +E F GK DF++W+ +MK IL QQ V  A+ +      T T + K++ DE AY  IIL L
Sbjct: 8   IERFIGKNDFNVWRMRMKAILFQQGVKDALKDESELPVTMTAKEKSDIDEKAYHLIILAL 67

Query: 467 SDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENLDVFTK 646
            D  LR+  ++ +AK +W+KL++LY + SL +               ++ + +NLD F K
Sbjct: 68  GDKALREFSEETTAKGVWNKLEQLYMQNSLSNRLYLKERLYGFKMQEDRSIADNLDDFAK 127

Query: 647 LIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLK 826
           ++ ++   G K  D+   +++L ++P  YS+ K  +KYGR ++TL+ V + L+SKEL+LK
Sbjct: 128 IVLEMSNIGIKVDDEDKAVLVLKSLPGLYSNFKETMKYGRKTLTLEEVQSALRSKELELK 187

Query: 827 VNKGGRQNSGEVMHVRGRSQ 886
             KG   ++GE + +RGR +
Sbjct: 188 -KKG---SNGEGLSIRGRKK 203


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  126 bits (316), Expect = 2e-26
 Identities = 93/340 (27%), Positives = 165/340 (48%), Gaps = 6/340 (1%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTYVDTDTKEIKAET---DEYA 442
            MA   Y+L   + KT FS+WQ KM+ +L Q         ++    T E  AE    D  A
Sbjct: 1    MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKA 60

Query: 443  YSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVD 622
             S I L+LS+ +L++V ++K+A ELW KL+ +     L S               +  V 
Sbjct: 61   LSLIQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVL 120

Query: 623  ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGL 802
             ++ VF +++ D+     +  D+   ++LL ++P SY++ +  I   RD +TL  V   L
Sbjct: 121  NHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEAL 180

Query: 803  KSKE-LDLKVNKGGRQNSGEVMHVRGRSQYR-FDNQQKFDNHQNQNSNXXXXXXXXXXXX 976
            +++E +   V      + GE + VRGRS+ R +++    D  Q++  +            
Sbjct: 181  QNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKF----- 235

Query: 977  XXXXXXCYNCGEVGHYIRECPNKKGNQNQSND-QANLASTSENAGDIFMVTGICDVPIVN 1153
                  C  C +  H+I EC   +  + + +D +A++ +++EN+      +G C V    
Sbjct: 236  ------CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAG 284

Query: 1154 SVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
             V S     +EW++D+AC+FH+   ++ FS+YK ++N  V
Sbjct: 285  YVAS----HDEWILDTACSFHICINRDWFSSYKSVQNEDV 320


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 415

 Score =  124 bits (310), Expect = 1e-25
 Identities = 89/331 (26%), Positives = 164/331 (49%), Gaps = 5/331 (1%)
 Frame = +2

Query: 275  AVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTY---VDTDT-KEIKAETDEYA 442
            AV  + +  F+G  +F +WQ ++K +L QQ + KA+  T    +D D   E+KA+    A
Sbjct: 5    AVSKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQ----A 60

Query: 443  YSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVD 622
             ++I L+LSDSV+ +V  +KS KE+WDKL  L+   SL S                 D+ 
Sbjct: 61   AATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLR 120

Query: 623  ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGL 802
            +++DVF +L+ D+     K  D+   I+LL ++P SY  V + + +G+D++  + +++ L
Sbjct: 121  KHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSL 180

Query: 803  KSKELDL-KVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXX 979
             +++L   K N+  + + G+ + V+ +     D++      + + +              
Sbjct: 181  LARDLRRSKKNEATKASQGKSLLVKDKH----DHEAGVSKSKEKGAR------------- 223

Query: 980  XXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSV 1159
                 CY C E GH  R CP  K    +    A+LA+  +++      +G  ++  V+  
Sbjct: 224  -----CYKCHEFGHIRRNCPLLK---KRKGGIASLAARGDDSD-----SGSHEILTVSDE 270

Query: 1160 HSSTVCENEWLIDSACTFHMSPFKNLFSNYK 1252
             S       W++DSA ++H++  +  FS+YK
Sbjct: 271  MSGEA----WMLDSASSYHVTSKREWFSSYK 297


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  123 bits (309), Expect = 1e-25
 Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 5/339 (1%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTYVDTDTKEIKAET---DEYA 442
            MA   Y+L   + KT FS+WQ KM+ IL Q         ++    + E  AE    D  A
Sbjct: 1    MASIKYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKA 60

Query: 443  YSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVD 622
               I L+LS+ +L++V ++K+A ELW KL+ +     L S               +  V 
Sbjct: 61   LLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVL 120

Query: 623  ENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGL 802
             ++ VF +++ D+     +  D+   ++LL ++P SY++ +  I   RD +TL  V   L
Sbjct: 121  NHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEAL 180

Query: 803  KSKE-LDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXX 979
            +++E +   V      + GE + VRGRS+ R  N    D  ++Q+               
Sbjct: 181  QNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSS-DRDKSQSRGRSKSRGKKF---- 235

Query: 980  XXXXXCYNCGEVGHYIRECPNKKGNQNQSND-QANLASTSENAGDIFMVTGICDVPIVNS 1156
                 C  C +  H+I EC   +  + + +D +A++ +++EN+      +G C V     
Sbjct: 236  -----CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAGC 285

Query: 1157 VHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
            V S     +EW++D+AC+FH+   ++ FS+YK ++N  V
Sbjct: 286  VAS----HDEWILDTACSFHICINRDWFSSYKSVQNGDV 320


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  123 bits (308), Expect = 2e-25
 Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 9/338 (2%)
 Frame = +2

Query: 287  YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTY----VDTDTKEIKAETDEYAYSSI 454
            ++L   N  T FS+WQ  M+GIL Q   Y    + +     +   +EI+   D+ A + I
Sbjct: 5    FDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK--DQKALALI 62

Query: 455  ILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENLD 634
             L+L + +L++   +K++ ELW KL+ +     L S                  V  ++ 
Sbjct: 63   QLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIA 122

Query: 635  VFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKE 814
             F K++ D+     K  D+   ++LL ++P SY++ +  I   RD +TL  V + L++KE
Sbjct: 123  EFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE 182

Query: 815  LDLKV---NKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
              +K+   N G   + GE +HVRGR++ +  N++ +D      S                
Sbjct: 183  -KMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKF-------- 233

Query: 986  XXXCYNCGEVGHYIRECPN--KKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSV 1159
               C  C    H I EC     K  +N+ + + ++AS + +  D    +G C V     V
Sbjct: 234  ---CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDD----SGDCLVVFAGCV 286

Query: 1160 HSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
                   +EW++DSAC+FH+   +N FS+YK ++   V
Sbjct: 287  AG----HDEWILDSACSFHICTKRNWFSSYKPVQKGDV 320


>gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
          Length = 277

 Score =  122 bits (307), Expect = 2e-25
 Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 9/289 (3%)
 Frame = +2

Query: 287  YNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNT-YVDTDTKEI-KAETDEYAYSSIIL 460
            Y +E FNG+ DFS+W+ KM  +L+QQ + KA+    ++ ++  +  K +  E A+S+I+L
Sbjct: 8    YEIEKFNGRNDFSLWRVKMCALLVQQGLLKALKGKEHLPSNLSDSEKDDLMEKAHSAILL 67

Query: 461  NLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENLDVF 640
             LSD VLR+V  ++SA  +W KL+ +Y   SL +                  V+ ++D F
Sbjct: 68   TLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEGTSVNTHIDEF 127

Query: 641  TKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELD 820
             ++I D+K    K  D+   ++LL  +P SY +    + YGRD++T + V   L SKEL 
Sbjct: 128  NRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDVRAYLNSKELK 187

Query: 821  LKVNKGGRQNSGEVMHV-RGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXXXC 997
             KV     +N  E + V RGR +     ++  D      +                   C
Sbjct: 188  KKVGGIRNENQAEGLVVNRGRGK-----EKGLDKKGKSRAK---------------GKTC 227

Query: 998  YNCGEVGHYIRECPNKKGNQ--NQSNDQANLA----STSENAGDIFMVT 1126
            +NCG+ GH+ ++C   K ++  N+S + AN+      T E   ++  +T
Sbjct: 228  WNCGQKGHFRQDCTKFKDDEKFNKSENTANVVGDDFDTFEETDNVLAIT 276


>emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera]
          Length = 253

 Score =  122 bits (305), Expect = 4e-25
 Identities = 77/264 (29%), Positives = 137/264 (51%), Gaps = 2/264 (0%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITN--TYVDTDTKEIKAETDEYAY 445
            M    +++E F  K DF +W+ KM+  L+QQ +  A+      + T  ++ K E  E A+
Sbjct: 1    MGTAKFDVEEFTSKNDFRLWRLKMRAFLVQQGLQDALLREKNLLSTMQEKHKIELLEKAH 60

Query: 446  SSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDE 625
            S+I+L+L D++LR+V K KSA ELW KL+ LY   SL +                  ++E
Sbjct: 61   SAIVLSLGDTLLREVAKAKSAAELWLKLESLYMTKSLGNRLHKKIKLYTFKMIPGMSIEE 120

Query: 626  NLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLK 805
            +LD F K+I D++      +D+   I+L  ++  SY+++K AI Y RD++T D V + L 
Sbjct: 121  HLDHFNKIILDLENIDIVVLDEDKAIMLPTSLDASYTNMKEAIMYERDNMTFDEVQSILH 180

Query: 806  SKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXX 985
            ++E  L+  +  ++ SGE +++RG    R++ ++K  N+ N  S                
Sbjct: 181  ARE--LQKQEESKEKSGEGLNIRG----RYEKREKKGNNSNSRSK-----------FQDQ 223

Query: 986  XXXCYNCGEVGHYIRECPNKKGNQ 1057
                +   +  H+ ++CP+++  Q
Sbjct: 224  EVQVFYLSQGRHFKKDCPDRRQTQ 247


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  122 bits (305), Expect = 4e-25
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 1/294 (0%)
 Frame = +2

Query: 395  VDTDTKEIKAETDEYAYSSIILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXX 574
            ++T  ++ K +  E A S+IIL+L D++LR+V K K   ELW KL+ LY   SL +    
Sbjct: 88   LNTMQEKEKTKLLEKAQSAIILSLGDTMLREVAKAKPTAELWLKLESLYMTKSLANRLHK 147

Query: 575  XXXXXXXXXDLNKDVDENLDVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAI 754
                          ++E+ D F K+I D++       ++   I+LL ++  SY+++K AI
Sbjct: 148  KIKLYTFKITPGMSIEEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDASYTNMKEAI 207

Query: 755  KYGRDSITLDTVVNGLKSKELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQN 934
             YGRDS+T D V + L  +E  L+  +  +  SGE +++RG    R+D ++K   +    
Sbjct: 208  MYGRDSMTFDEVQSILHPRE--LQKQEESKDESGEGLNIRG----RYDKREKKCKNLKAK 261

Query: 935  SNXXXXXXXXXXXXXXXXXXCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDI 1114
            S                   C+ C + GH+ ++C +K+          N    + N GD 
Sbjct: 262  SK-----------SNTKKFKCFICHKEGHFKKDCSDKR---------QNTIKKTVNEGDA 301

Query: 1115 FMV-TGICDVPIVNSVHSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFV 1273
             ++  G     ++N     +    EW++DS C+FHM P K  F ++KE     V
Sbjct: 302  AVILDGYDSAKVLNVAEMDS--GKEWILDSGCSFHMCPIKAWFEDFKEANGGHV 353


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 425

 Score =  121 bits (303), Expect = 7e-25
 Identities = 84/332 (25%), Positives = 155/332 (46%), Gaps = 5/332 (1%)
 Frame = +2

Query: 272  MAVPSYNLEPFNGKTDFSIWQQKMKGILIQQKVYKAITNTYVDTDTKEIKAETDEYAYSS 451
            M V  + +  F+G  +F +WQ ++K +L QQ + KA+  T  +        E    A ++
Sbjct: 4    MVVSKFEVVKFDGTGNFILWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAAT 63

Query: 452  IILNLSDSVLRKVGKQKSAKELWDKLQELYTETSLPSXXXXXXXXXXXXXDLNKDVDENL 631
            I L+LSDSV+  V  +K+ KE+WDKL  LY   SL S                 D+ +++
Sbjct: 64   IRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHV 123

Query: 632  DVFTKLIQDIKLTGDKNIDDYTPIVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSK 811
            DVF +L+ D+     K  D+   I+LL ++P SY  V + + +G+D++  +  ++ L ++
Sbjct: 124  DVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVKTEEKISSLLAR 183

Query: 812  ELDLKVNKGGRQNSGEVMHVRGRSQYRFDNQQKFDNHQNQNSNXXXXXXXXXXXXXXXXX 991
            +L  + NK     + +   +  ++++  D++      +++ +                  
Sbjct: 184  DLR-RSNKNEAMEASQAESLLVKAKH--DHEAGVSKSKDKGAR----------------- 223

Query: 992  XCYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSST 1171
             CY C E GH  R CP  K    +    A+LA+  +++               +S H + 
Sbjct: 224  -CYKCHEFGHIRRNCPLLK---KRKGGIASLAARGDDSD--------------SSSHETL 265

Query: 1172 VCENE-----WLIDSACTFHMSPFKNLFSNYK 1252
               NE     W++DSA ++H++  +  FS+YK
Sbjct: 266  TVSNEKSGEAWMLDSASSYHVTSKREWFSSYK 297