BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00008206
         (917 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   189   2e-45
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   181   3e-43
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   174   4e-41
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   165   3e-38
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom...   157   4e-36
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   147   4e-33
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   147   4e-33
ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citr...   147   4e-33
ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citr...   147   4e-33
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe...   147   7e-33
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   146   1e-32
ref|XP_006450755.1| hypothetical protein CICLE_v10007968mg [Citr...   139   1e-30
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise...   139   1e-30
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   139   1e-30
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   137   7e-30
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   132   1e-28
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   132   2e-28
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      125   2e-26
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   119   2e-24
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   117   5e-24

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  189 bits (479), Expect = 2e-45
 Identities = 121/286 (42%), Positives = 160/286 (55%), Gaps = 2/286 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAETL-NDT 238
           MGFRLNLKW                      +G+++S+   R S  S+   + E+L  D 
Sbjct: 3   MGFRLNLKWD-FPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDP 61

Query: 239 SRAHVCSSSP-QLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +   CSS   Q  EN Y      KM +GK S   L+ ++ N  Q    +D  A +  LQ
Sbjct: 62  FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIV-NASQAPIGEDISASVAGLQ 120

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A++ASQF LL++NLDILE+MF+DSN VRLERDI+ QL RLGAL+LF  CLSRTLK+S S 
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DL +AP E + E + N +VD+H+ KV ++SG                  IY   L S TI
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLR 913
            +   +P   +  RT  SR KR   A+NEAEMS GVK+VA LE++R
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIR 286


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  181 bits (460), Expect = 3e-43
 Identities = 112/255 (43%), Positives = 151/255 (59%), Gaps = 2/255 (0%)
 Frame = +2

Query: 155 RGRDSSYFLVRLSAASILYGEAETL-NDTSRAHVCSSSP-QLLENYYLGTRESKMALGKG 328
           +G+++S+   R S  S+   + E+L  D  +   CSS   Q  EN Y      KM +GK 
Sbjct: 83  QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 329 SSDGLYSLLDNDIQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRLER 508
           S   L+ ++ N  Q    +D  A +  LQA++ASQF LL++NLDILE+MF+DSN VRLER
Sbjct: 143 SHGDLFKIV-NASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 509 DILEQLERLGALRLFHSCLSRTLKSSDSIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSG 688
           DI+ QL RLGAL+LF  CLSRTLK+S S DL +AP E + E + N +VD+H+ KV ++SG
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261

Query: 689 XXXXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQPKFVSPIRTSRSRNKRQKIARNEAE 868
                             IY   L S TI +   +P   +  RT  SR KR   A+NEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321

Query: 869 MSTGVKMVAELEKLR 913
           MS GVK+VA LE++R
Sbjct: 322 MSKGVKLVANLERIR 336


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  174 bits (441), Expect = 4e-41
 Identities = 116/287 (40%), Positives = 156/287 (54%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAE-TLNDT 238
           MGFRL+LKWG                     +GR++ Y   R S    + G+ E + +D 
Sbjct: 1   MGFRLHLKWG-FSVQPPFSSNSSSWPSSHSFKGREALYDPAR-SLKPFITGDCEPSHSDP 58

Query: 239 SRAHVCSSSPQLLENYYLGTRESKMALGKGSSDGLYSLL-DNDIQTSNNKDKLAYLTSLQ 415
            R   C S PQL  +    T E K   G+GS   +Y  +  + I  S + +K  YL +  
Sbjct: 59  FRVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNT-- 116

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
            T++  F LLMKNLD+LE+MF+DS   RLERDIL QLE+LGAL  FH+CLSRT  SS   
Sbjct: 117 -TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFP 175

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
            + + P E+++E   +D V N + KV ++S                   I   +  +  I
Sbjct: 176 KVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNI 235

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
             D QQPKF S  RT  SRNKRQKIA+NEAEMS GVK+VA+LE++R+
Sbjct: 236 QEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRS 282


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  165 bits (417), Expect = 3e-38
 Identities = 114/287 (39%), Positives = 154/287 (53%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAE-TLNDT 238
           MGFRL+LKWG                     +GR++ Y   R S    + G+ E + +D 
Sbjct: 1   MGFRLHLKWG-FSLQPPFSSNSSSWPSSHSFKGRETLYDPAR-SLKPFINGDCEPSHSDP 58

Query: 239 SRAHVCSSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSN-NKDKLAYLTSLQ 415
            R   C S PQL  +    T E+K   G+GS   +Y     DI +   + +K  YL +  
Sbjct: 59  FRVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYG----DIGSYKIDGEKPTYLNT-- 112

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
            T++  F LLMKNLD+LE+MF+DS   RLERDIL QLE+LGAL  FH+CLSRT  SS   
Sbjct: 113 -TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFP 171

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
            + + P E+++E   +D V N + KV ++S                   I   +  +  I
Sbjct: 172 KVLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNI 231

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
             D QQ KF S  RT  SR KRQKIA+NEAEMS GVK+VA+LE++R+
Sbjct: 232 QEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRS 278


>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
          Length = 848

 Score =  157 bits (398), Expect = 4e-36
 Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 5/254 (1%)
 Frame = +2

Query: 170  SYFLV----RLSAASILYGEAETLNDTSRAHVCSSSPQLLENYYLGTRESKMALGKGSSD 337
            S+FL     RL ++ +L     +L D  +A+  S++PQ LE   L   E K+ +GKGS  
Sbjct: 327  SHFLANSPSRLPSSGVL-----SLKDPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQA 381

Query: 338  GLYSLLDND-IQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRLERDI 514
              +SL   D        DK +  TS QA +AS + LLM+NLD+LE+ F+DS+ + LER+I
Sbjct: 382  HSHSLTMIDKTHELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREI 441

Query: 515  LEQLERLGALRLFHSCLSRTLKSSDSIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXX 694
            L QL R GAL+LF++CLSRTLK+S+ +DLS+ P     +  +N SVD     + + S   
Sbjct: 442  LLQLGRFGALKLFNTCLSRTLKASNILDLSDVPAN-SGDCNMNLSVDGQKDNIVVCSRKK 500

Query: 695  XXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMS 874
                            I  Q + S+T+   FQ+PK  S  R S SR++R +IARNEAEMS
Sbjct: 501  KQRKKIRERALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMS 560

Query: 875  TGVKMVAELEKLRT 916
             GVK+VA LE++RT
Sbjct: 561  KGVKVVANLERIRT 574


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553990|gb|ESR64004.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  147 bits (372), Expect = 4e-33
 Identities = 103/287 (35%), Positives = 144/287 (50%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE+++NDS D H+ K+ + S                     L  L S+ +
Sbjct: 157 DLSDVH---TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
               +QP   SP R   SR +R  IARNEAEMS GV++VA LE+++T
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKT 260


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  147 bits (372), Expect = 4e-33
 Identities = 103/287 (35%), Positives = 144/287 (50%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE+++NDS D H+ K+ + S                     L  L S+ +
Sbjct: 157 DLSDVH---TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
               +QP   SP R   SR +R  IARNEAEMS GV++VA LE+++T
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKT 260


>ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917506|ref|XP_006450759.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553984|gb|ESR63998.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553985|gb|ESR63999.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 383

 Score =  147 bits (372), Expect = 4e-33
 Identities = 103/287 (35%), Positives = 144/287 (50%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE+++NDS D H+ K+ + S                     L  L S+ +
Sbjct: 157 DLSDVH---TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
               +QP   SP R   SR +R  IARNEAEMS GV++VA LE+++T
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKT 260


>ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917512|ref|XP_006450762.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553983|gb|ESR63997.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553988|gb|ESR64002.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 381

 Score =  147 bits (372), Expect = 4e-33
 Identities = 103/287 (35%), Positives = 144/287 (50%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE+++NDS D H+ K+ + S                     L  L S+ +
Sbjct: 157 DLSDVH---TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
               +QP   SP R   SR +R  IARNEAEMS GV++VA LE+++T
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKT 260


>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  147 bits (370), Expect = 7e-33
 Identities = 101/288 (35%), Positives = 154/288 (53%), Gaps = 4/288 (1%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILY--GEAETLND 235
           +GFRLNLK G                     RGR+ S+   RLS  S++   GEA + + 
Sbjct: 3   LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 236 TSRAHVCSSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTS-- 409
                  S+SPQ+LE+      E K A  +       S  DN +  +  K    +++S  
Sbjct: 63  LKVYTFPSASPQILEDGVSELEEVKTAFRRVPK----SFSDNQMPVAEGK----FISSKG 114

Query: 410 LQATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSD 589
           L+A  AS F LL++NL++LE+ F+ S+ ++LE++IL QL RLGAL+LF  CLSRTLK+S 
Sbjct: 115 LEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSS 174

Query: 590 SIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSD 769
            +DLS+ P   VEE ++    DN+V ++ ++SG                  +    L   
Sbjct: 175 FLDLSDIPTVPVEEGKMERKEDNNVGEIIVRSG--KKEERRSRKRTSDNAIVSSNSLPPK 232

Query: 770 TISRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLR 913
           TI +  ++P   S  R S  R++R  I++NEAEMS GVK++A+LE+++
Sbjct: 233 TIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIK 280


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  146 bits (368), Expect = 1e-32
 Identities = 102/287 (35%), Positives = 144/287 (50%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE++++DS D H+ K+ + S                    YL  L S+ +
Sbjct: 157 DLSDVH---TEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
               +QP   S  R   SR +R  IARNEAEMS GV++VA LE+++T
Sbjct: 214 QEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKT 260


>ref|XP_006450755.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917500|ref|XP_006450756.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|567917508|ref|XP_006450760.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|567917510|ref|XP_006450761.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553981|gb|ESR63995.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553982|gb|ESR63996.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553986|gb|ESR64000.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553987|gb|ESR64001.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 286

 Score =  139 bits (350), Expect = 1e-30
 Identities = 99/285 (34%), Positives = 140/285 (49%), Gaps = 2/285 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGE-AETLNDT 238
           MGFRLNLKW                      RGR+ S+   RLS  S +  + A    D 
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 239 SRAHVCSS-SPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            +A+ CS  + Q +EN Y  T E +                          K        
Sbjct: 62  VKAYTCSFVNTQTVENDYSETEEIRQ-------------------------KSTSCIGQD 96

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
           A+  S F+LLM+NLD+LE  F+DS+A+RLER+IL+QL +LGAL+LF+S LSR +K+S+ +
Sbjct: 97  ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+      EE+++NDS D H+ K+ + S                     L  L S+ +
Sbjct: 157 DLSDVH---TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKL 910
               +QP   SP R   SR +R  IARNEAEMS GV++V   +++
Sbjct: 214 QEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVFNFKEI 258


>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
          Length = 463

 Score =  139 bits (350), Expect = 1e-30
 Identities = 82/198 (41%), Positives = 120/198 (60%), Gaps = 1/198 (0%)
 Frame = +2

Query: 323 KGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRL 502
           K SSD  Y   D  I    N+D + Y +S  A + S+F LLMKNLD LE+MFSDS AVRL
Sbjct: 8   KESSDDAY---DRSIGIPKNEDDMTYFSSSNAVKTSRFVLLMKNLDTLENMFSDSYAVRL 64

Query: 503 ERDILEQLERLGALRLFHSCLSRTLKSSDSID-LSNAPVEIVEERRVNDSVDNHVSKVFI 679
           E DILEQL+RLGA+ LF+SCLS TL+S+++ D  S+AP +++ +      +D+   KV +
Sbjct: 65  EDDILEQLQRLGAIHLFNSCLSTTLRSAETFDSSSHAPADVLRK------IDSANCKVIV 118

Query: 680 QSGXXXXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQPKFVSPIRTSRSRNKRQKIARN 859
           QSG                      + +S  + ++F+ PK  S    +RSR K+Q+I ++
Sbjct: 119 QSGKKELRKLRRKRAVDFEAGNLSLQFTSRDVRKNFRTPKTDSARAVARSRYKKQRITQS 178

Query: 860 EAEMSTGVKMVAELEKLR 913
           E++M+ G K+V ELE++R
Sbjct: 179 ESDMAAGFKLVTELERIR 196


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  139 bits (350), Expect = 1e-30
 Identities = 97/287 (33%), Positives = 148/287 (51%), Gaps = 2/287 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAETLNDTS 241
           +GFRL  KWG                     RG ++S    RLS  S++  E + LN  S
Sbjct: 3   VGFRLTPKWGSPMQSHSATNSTSMFSSFS-ARGMEASVNQARLSFLSVVSEEGDILNKHS 61

Query: 242 -RAHVCSSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQA 418
            ++  CSS+ Q +EN  L     KM + K S   + +++ ND + S  ++     T L+ 
Sbjct: 62  FKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGND-KVSVEEEISTSHTRLRE 120

Query: 419 TQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSID 598
              S+   L+ NLD LE + +D +A++LERDIL QL RLGAL  F++CLSRTL++S+ +D
Sbjct: 121 RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD 180

Query: 599 LSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQ-ELSSDTI 775
           LS  P E   E + +  + +   K  +++G                        L S T+
Sbjct: 181 LSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTV 240

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
             +  +P FV   RTS S ++R  IARNEA+M+ GVK+ ++LE++RT
Sbjct: 241 QNNLPKPTFVK--RTSSSSSRRSLIARNEAKMTRGVKVASDLERIRT 285


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  137 bits (344), Expect = 7e-30
 Identities = 99/286 (34%), Positives = 147/286 (51%), Gaps = 2/286 (0%)
 Frame = +2

Query: 62  MGFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAETLN-DT 238
           +GFRLNLK G                     RGR+ S+    LS  S++  E ET + D 
Sbjct: 3   LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62

Query: 239 SRAHVC-SSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQ 415
            + + C S+SPQLL++  L   E KM   + S  G  +++D         DK     S  
Sbjct: 63  LKVYTCPSASPQLLDDG-LSEMEEKMNPRRMSKSGSANMID---------DKEYSFMSSA 112

Query: 416 ATQASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSI 595
             + S + LL++NL++LE+ F+DS   +LE++IL QL RLGAL+LF  CLSRTLK+S  +
Sbjct: 113 GLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFL 172

Query: 596 DLSNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTI 775
           DLS+ P E +E+ +          K  ++SG                   +   L    +
Sbjct: 173 DLSDIPTEPIEKHKTE-------RKNIVRSGKKEEQKSRKRTSYDSKK--FSGTLPVKQM 223

Query: 776 SRDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLR 913
              F++P   S  R S SR++R  +A+NEAEMS GVK++A+LE+L+
Sbjct: 224 REGFKKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLK 269


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  132 bits (333), Expect = 1e-28
 Identities = 93/284 (32%), Positives = 144/284 (50%), Gaps = 2/284 (0%)
 Frame = +2

Query: 68  FRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAETL-NDTSR 244
           FR NL+WG                     +GR++++   RLS  S +  E E++  +T +
Sbjct: 5   FRPNLRWG-FQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLK 63

Query: 245 AHVC-SSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQAT 421
            + C S +PQ   N  L   E +M  G  S   ++  + +  + S  +D  +  TSL   
Sbjct: 64  TYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKST-RPSKVEDNFSSCTSLPTG 122

Query: 422 QASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSIDL 601
           +AS F +LM+NLD+LE+ F++S  + LERDI+ QL +LGAL  F++CLSRTLK+S   D 
Sbjct: 123 KASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDS 182

Query: 602 SNAPVEIVEERRVNDSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTISR 781
           S  P+E  E+  VN   ++    V + S                   I  + L++  +  
Sbjct: 183 SGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKE 242

Query: 782 DFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLR 913
              +    S  ++S S  +R  +A NEAEMSTGVK+VA LE++R
Sbjct: 243 KIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIR 286


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  132 bits (332), Expect = 2e-28
 Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 2/286 (0%)
 Frame = +2

Query: 65  GFRLNLKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYFLVRLSAASILYGEAETLN-DTS 241
           GFRLNLK                       RGR+++ +  RLS  S++  E +  + D  
Sbjct: 4   GFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPL 63

Query: 242 RAHVCSSSPQLLENYYLGTRESKMALGKGSSDGLYSLLDNDIQTSNNKDKLAYLTSLQAT 421
           + +  S + Q +EN +      K+  GK S  GL  + D ++     K+ +    S    
Sbjct: 64  KTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSL---KEDIFVSPSSTKE 120

Query: 422 QASQFKLLMKNLDILEDMFSDSNAVRLERDILEQLERLGALRLFHSCLSRTLKSSDSIDL 601
           + S+F LL++NL+ILE  F+DS+A +LE DIL QL +LGAL+LF++CL+RTL++++ +++
Sbjct: 121 RTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEV 180

Query: 602 SNAPVEIVEERRVN-DSVDNHVSKVFIQSGXXXXXXXXXXXXXXXXXAIYLQELSSDTIS 778
           S+   EI+ E  +N  S++N +  V   +                        L S  I 
Sbjct: 181 SDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQ 240

Query: 779 RDFQQPKFVSPIRTSRSRNKRQKIARNEAEMSTGVKMVAELEKLRT 916
              ++P   S  + S+S+++R  IARNEAEM+ G+K++A+LEK+RT
Sbjct: 241 SGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRT 286


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  125 bits (314), Expect = 2e-26
 Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 2/255 (0%)
 Frame = +2

Query: 155 RGRDSSYFLVRLSAASILYGEAETLN-DTSRAHVCSSS-PQLLENYYLGTRESKMALGKG 328
           RG++  +   RLS  +I + E+ETL  DT R H  SSS P  +EN Y     +   + K 
Sbjct: 34  RGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLETT---ISKR 90

Query: 329 SSDGLYSLLDNDIQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRLER 508
           S   L S    D +  +++D   Y+ S+Q+  AS F  LM N+++LE+  SDS  ++LE+
Sbjct: 91  SCKDLIS----DTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEK 146

Query: 509 DILEQLERLGALRLFHSCLSRTLKSSDSIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSG 688
           DIL QL RLGAL+LFH+CLSR       ID+S+ P  I E+ + N   DN + K  + S 
Sbjct: 147 DILVQLGRLGALQLFHACLSRI------IDMSDLPGLITEDGKANVRKDNELKKKLVFSK 200

Query: 689 XXXXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQPKFVSPIRTSRSRNKRQKIARNEAE 868
                            +      S  +I          +  +T ++R +R  IA+NEAE
Sbjct: 201 RKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKT-KARGRRAIIAKNEAE 259

Query: 869 MSTGVKMVAELEKLR 913
           MS G+K+VA+LEK++
Sbjct: 260 MSRGIKVVAQLEKVK 274


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
           gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
           factor [Medicago truncatula]
          Length = 549

 Score =  119 bits (297), Expect = 2e-24
 Identities = 92/261 (35%), Positives = 135/261 (51%), Gaps = 8/261 (3%)
 Frame = +2

Query: 158 GRDSSYFLVRLSAASILYGEAETLN-DTSRAHVCSSSPQLLENYYL-GTRESKMALGKGS 331
           GR++ +  VRLS  S +Y E ETL  D  +    SS+ +  E   L G   +K+  GK S
Sbjct: 42  GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRS 101

Query: 332 SDGLYSLLDNDIQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRLERD 511
              ++ ++DN               S    + S F LLM+NL +LE+ F+DS A+RLE++
Sbjct: 102 LSSVHEMIDN---------------SHLPFEESHFGLLMENLGVLEETFADSEALRLEKN 146

Query: 512 ILEQLERLGALRLFHSCLSRTLKSSDSIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSGX 691
           I+ QLE+LGAL LF+ CL+ +  +S   + ++  +E VEE + N  VD++  KV + S  
Sbjct: 147 IILQLEKLGALELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSK 206

Query: 692 XXXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQ--PKFVSPI----RTSRSRNKRQKIA 853
                                  SS ++  D  Q  P   SP     R S ++NKR  IA
Sbjct: 207 RKENRRRKRGSVSIAP-------SSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIA 259

Query: 854 RNEAEMSTGVKMVAELEKLRT 916
           + E EMS GVK++AELEK+RT
Sbjct: 260 QREVEMSKGVKVLAELEKIRT 280


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  117 bits (294), Expect = 5e-24
 Identities = 87/255 (34%), Positives = 132/255 (51%), Gaps = 2/255 (0%)
 Frame = +2

Query: 158 GRDSSYFLVRLSAASILYGEAETLN-DTSRAHVCSSSP-QLLENYYLGTRESKMALGKGS 331
           GR+  +   RLS  S +Y E ETL  D  +    SSS  ++ E   L    +K+  GK S
Sbjct: 34  GREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRS 93

Query: 332 SDGLYSLLDNDIQTSNNKDKLAYLTSLQATQASQFKLLMKNLDILEDMFSDSNAVRLERD 511
              ++ ++DN              T L   +   F LLM+NL ILE+ F+DS A+RLE+D
Sbjct: 94  LSSVHEIIDN--------------TQLPFGEP-HFGLLMENLGILEETFADSEAMRLEKD 138

Query: 512 ILEQLERLGALRLFHSCLSRTLKSSDSIDLSNAPVEIVEERRVNDSVDNHVSKVFIQSGX 691
           I+ +LE+LGAL LF+ CL+R+  +S   + ++  +E V+E++ N  VDN+  KV +QS  
Sbjct: 139 IVLKLEKLGALELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKR 198

Query: 692 XXXXXXXXXXXXXXXXAIYLQELSSDTISRDFQQPKFVSPIRTSRSRNKRQKIARNEAEM 871
                           +     L  +      + P  +   R S + N+R  IA+ E EM
Sbjct: 199 KENRTRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVK-RVSNTNNRRAVIAQREVEM 257

Query: 872 STGVKMVAELEKLRT 916
           S GVK++AELEK++T
Sbjct: 258 SKGVKVLAELEKMKT 272