BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00006473
         (1213 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   236   1e-59
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   236   1e-59
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              233   1e-58
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   233   1e-58
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   231   3e-58
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...   222   3e-55
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   221   4e-55
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   221   4e-55
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   220   1e-54
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...   208   4e-51
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   201   4e-49
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   199   1e-48
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   199   2e-48
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   192   2e-46
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   192   2e-46
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...   191   7e-46
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...   191   7e-46
gb|AAB95289.1| unknown protein [Arabidopsis thaliana]                 191   7e-46
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   189   2e-45
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]   188   4e-45

>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  236 bits (603), Expect = 1e-59
 Identities = 110/190 (57%), Positives = 141/190 (74%), Gaps = 7/190 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N  EWKN++ RP       NDD N   L+T + QRLD FT+EEQD+L++ E IM++IR++
Sbjct: 1766 NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKV 1825

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ+GYNDGDPL  +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH  FQ+SRCFY V+
Sbjct: 1826 MHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVT 1885

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 583
             DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P    NRDR PA  E     S 
Sbjct: 1886 TDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRNPA-SEENENKSI 1942

Query: 584  NRDSTPAPEE 613
              + TP PEE
Sbjct: 1943 GGELTPIPEE 1952


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  236 bits (603), Expect = 1e-59
 Identities = 110/190 (57%), Positives = 141/190 (74%), Gaps = 7/190 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N  EWKN++ RP       NDD N   L+T + QRLD FT+EEQD+L++ E IM++IR++
Sbjct: 1826 NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKV 1885

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ+GYNDGDPL  +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH  FQ+SRCFY V+
Sbjct: 1886 MHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVT 1945

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 583
             DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P    NRDR PA  E     S 
Sbjct: 1946 TDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRNPA-SEENENKSI 2002

Query: 584  NRDSTPAPEE 613
              + TP PEE
Sbjct: 2003 GGELTPIPEE 2012


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  233 bits (594), Expect = 1e-58
 Identities = 114/190 (60%), Positives = 139/190 (73%), Gaps = 7/190 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N+ EWKNK+ RPN       DD +A G+FT TRQR+D FT+EEQD+L + E IM++IRRI
Sbjct: 1701 NNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRI 1760

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ GYNDGDPL  DDQ+YI+D V N HPDKA KMG GID++MV+RH  F +SRCFY VS
Sbjct: 1761 MHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVS 1820

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 583
             DG K DFSYRKCLENF++ KYPD AETFI KYF++  PR+G NR+R     + G     
Sbjct: 1821 TDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIPEDGG----- 1873

Query: 584  NRDSTPAPEE 613
            NR+ +  PEE
Sbjct: 1874 NREQSVVPEE 1883


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  233 bits (594), Expect = 1e-58
 Identities = 114/190 (60%), Positives = 139/190 (73%), Gaps = 7/190 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N+ EWKNK+ RPN       DD +A G+FT TRQR+D FT+EEQD+L + E IM++IRRI
Sbjct: 1641 NNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRI 1700

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ GYNDGDPL  DDQ+YI+D V N HPDKA KMG GID++MV+RH  F +SRCFY VS
Sbjct: 1701 MHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVS 1760

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 583
             DG K DFSYRKCLENF++ KYPD AETFI KYF++  PR+G NR+R     + G     
Sbjct: 1761 TDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIPEDGG----- 1813

Query: 584  NRDSTPAPEE 613
            NR+ +  PEE
Sbjct: 1814 NREQSVVPEE 1823


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  231 bits (590), Expect = 3e-58
 Identities = 110/166 (66%), Positives = 132/166 (79%), Gaps = 3/166 (1%)
 Frame = +2

Query: 65   NDAEWKNKRTRPN---DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQT 235
            N+ +WKNKR RP+   +D NA G+FT TRQRLD FT++EQD+LS+ E +M +IRRIMHQT
Sbjct: 1749 NNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQT 1808

Query: 236  GYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGG 415
            GYNDGDPL  DDQ+Y++DNV +YHPDKA KMGAGIDH+ V+RH  FQ+SRCFY VS DG 
Sbjct: 1809 GYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGC 1868

Query: 416  KTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPA 553
            K DFSYRKCLENF++GKYPD+A+ FI KYF     R G NR R PA
Sbjct: 1869 KQDFSYRKCLENFIKGKYPDLADEFIAKYF----ARRG-NRQRTPA 1909


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  222 bits (565), Expect = 3e-55
 Identities = 112/186 (60%), Positives = 134/186 (72%), Gaps = 6/186 (3%)
 Frame = +2

Query: 74   EWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQT 235
            EWKNK   P      ND+     L+TVTRQRLD FT+EEQDVLS  E +M+++RRIMHQ+
Sbjct: 1673 EWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQS 1732

Query: 236  GYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGG 415
            GYNDGDPL  DDQ++++DNV NYHPDKAAKMG GIDH+ VNRHG FQDSRCF+ VS DG 
Sbjct: 1733 GYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGR 1792

Query: 416  KTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDS 595
              DFSYRKCL+N++R K+PD+AETFI KYF     R G NR+R P   +  T S   + S
Sbjct: 1793 TEDFSYRKCLDNYIREKFPDLAETFIGKYFS----RRG-NRERNPTLIQTPTLS---QTS 1844

Query: 596  TPAPEE 613
            TP   E
Sbjct: 1845 TPEQTE 1850


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  221 bits (564), Expect = 4e-55
 Identities = 107/189 (56%), Positives = 135/189 (71%), Gaps = 7/189 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIM 226
            +  +WK K+  P      N+D  ++ LFT TRQRLD FT+EEQD LS  E  MK+IRRIM
Sbjct: 1856 DSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEPTMKSIRRIM 1915

Query: 227  HQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSV 406
            H++GYNDGDP+  +DQ++IIDNV NYHPDKAAKMG+GIDH+M++RH  FQDSRC Y VS 
Sbjct: 1916 HKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVVST 1975

Query: 407  DGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPS-SW 583
            DG K DFSYRKCL N ++ ++PDVA+ F+ KYF+KP+P  G N+DR        TP  +W
Sbjct: 1976 DGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKP--GGNQDR------ISTPEPAW 2027

Query: 584  NRDSTPAPE 610
            N    P PE
Sbjct: 2028 NNTQAPTPE 2036


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  221 bits (564), Expect = 4e-55
 Identities = 103/166 (62%), Positives = 126/166 (75%), Gaps = 7/166 (4%)
 Frame = +2

Query: 65   NDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            +  EWK K+ RP       NDD     ++TVTRQRLD FT+EEQD+LS  E IM++IRRI
Sbjct: 1687 SSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRI 1746

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ+GYNDGD L  DD+++I DNV NYHPDKA KMGAGIDH  V++HG FQDSRC + VS
Sbjct: 1747 MHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVS 1806

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRD 541
             DG + DFSYRKCLE+F+RGKYPD+ + FI KYF++  PRSG NR+
Sbjct: 1807 TDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRR--PRSGGNRE 1850


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  220 bits (560), Expect = 1e-54
 Identities = 102/166 (61%), Positives = 126/166 (75%), Gaps = 7/166 (4%)
 Frame = +2

Query: 65   NDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            +  EWK K+ RP       NDD     ++TVTRQRLD FT+EEQD+LS+ E IM++IRRI
Sbjct: 1689 SSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRI 1748

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ+GYNDGD L  DD+++I DNV NYHPDKA KMGAGIDH  V++HG FQDSRC + VS
Sbjct: 1749 MHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVS 1808

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRD 541
             DG + DFSYRKCLE+F+RGKYP+  + FI KYF++  PRSG NR+
Sbjct: 1809 TDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRR--PRSGGNRE 1852


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  208 bits (529), Expect = 4e-51
 Identities = 97/167 (58%), Positives = 127/167 (76%), Gaps = 4/167 (2%)
 Frame = +2

Query: 65   NDAEWKNKRTRP----NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQ 232
            +DA  KN   +     NDD +   ++T TRQRLD FT+EEQD+LS+ E +M++IR+IMHQ
Sbjct: 1614 SDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQ 1673

Query: 233  TGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDG 412
            +GYNDGDPL   DQ++I++NV  +HPDKA KMGAG+D++MV++H  F DSRCFY VS DG
Sbjct: 1674 SGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDG 1733

Query: 413  GKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPA 553
             K DFSYRKCL+NF++GKYPD+A+ FI KYF+K  PR G  R+R  A
Sbjct: 1734 RKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRK--PRFGGFRERSVA 1778


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  201 bits (512), Expect = 4e-49
 Identities = 91/161 (56%), Positives = 118/161 (73%), Gaps = 7/161 (4%)
 Frame = +2

Query: 65   NDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N  EWK K +RP       NDD +   ++T TRQRLD FT+EEQDVLS  E  M +IRRI
Sbjct: 1815 NAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRI 1874

Query: 224  MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 403
            MHQ+GYNDGD L  +D ++I+D V N+HP+K AKMG+GID+  V+RHG FQ+SRC + +S
Sbjct: 1875 MHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVIS 1934

Query: 404  VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRS 526
             DG K DFSYRKCL+N ++ KYP++AE F  KYF +P+PR+
Sbjct: 1935 TDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRPRPRN 1975


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  199 bits (507), Expect = 1e-48
 Identities = 100/196 (51%), Positives = 129/196 (65%), Gaps = 17/196 (8%)
 Frame = +2

Query: 65   NDAEWKNKRTR--------------PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAI 202
            N  EWK+++ +              PNDD   + L T TR+R+D F  EE+DVLSE E++
Sbjct: 1706 NTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVAL-TATRKRMDEFPTEEKDVLSEVESL 1764

Query: 203  MKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDS 382
            M++IRRIMHQ+G  DG+PL  DDQTY+IDN++NYHPDKAAK+GAG+D I V +H  FQ+S
Sbjct: 1765 MQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQES 1824

Query: 383  RCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFK---KPQPRSGWNRDRGPA 553
            RCFY VS DG  TDFSY KC+E F++GKYP VAE+F  KYF+   +PQP S       P 
Sbjct: 1825 RCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRRSQRPQPASPSPASPSPT 1884

Query: 554  RGEAGTPSSWNRDSTP 601
                 +PS    + TP
Sbjct: 1885 SPSPASPSPAPPNPTP 1900


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  199 bits (505), Expect = 2e-48
 Identities = 102/189 (53%), Positives = 129/189 (68%), Gaps = 6/189 (3%)
 Frame = +2

Query: 65   NDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTGYN 244
            N  +WKN R RP   P          QRLD +++EEQDVL E E IM++IRRIM Q GYN
Sbjct: 1873 NSGDWKN-RNRPPRTPG---------QRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYN 1922

Query: 245  DGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGKTD 424
            DGDPL  DDQ ++++NV  +HPDK  KMGAGID++MVN+H  FQDSRCFY V  DG + D
Sbjct: 1923 DGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRRED 1982

Query: 425  FSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWN-RDRG-----PARGEAGTPSSWN 586
            FSYRKCL+N++R KYP++AE+F  KYF+KP+ R+      RG     P R EA TP+  +
Sbjct: 1983 FSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMPPRDEAATPA--D 2040

Query: 587  RDSTPAPEE 613
            + STP P E
Sbjct: 2041 QTSTPGPVE 2049


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  192 bits (488), Expect = 2e-46
 Identities = 90/185 (48%), Positives = 125/185 (67%), Gaps = 4/185 (2%)
 Frame = +2

Query: 71   AEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTG 238
            AEW+ KR      P  + N   +FT T+QRLDSFT+EEQ++LS+ E +M+ +R+IMH +G
Sbjct: 1692 AEWRGKRNHTPRPPRSEDNLAPMFTATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSG 1751

Query: 239  YNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGK 418
            Y DG+P+  DD+T++++ ++N+HP+K  K+G+ +D I V++H  F D+RCF+ VS DG K
Sbjct: 1752 YPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTRCFFVVSTDGAK 1811

Query: 419  TDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDST 598
             DFSYRK L N+L  KYPD AE FI KYFKKP+P    NRDR             N+D+T
Sbjct: 1812 QDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSG--NRDRN------------NQDAT 1857

Query: 599  PAPEE 613
            P  EE
Sbjct: 1858 PPGEE 1862


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  192 bits (488), Expect = 2e-46
 Identities = 92/185 (49%), Positives = 123/185 (66%), Gaps = 4/185 (2%)
 Frame = +2

Query: 71   AEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTG 238
            A+WK KR      P  + N   +FT TRQRLDSFT+EEQ++LS+ E +M+ +R+IMH + 
Sbjct: 1699 ADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSA 1758

Query: 239  YNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGK 418
            Y DGDP+  DD+T++++ ++N+HP K  K+G+G+D I V++H  F DSRCF+ VS DG K
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 419  TDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDST 598
             DFSYRK L N+L  KYPD AE FI KYF KP+P    NRDR             N+D+T
Sbjct: 1819 QDFSYRKSLNNYLMMKYPDRAEEFIDKYFTKPRPSG--NRDRN------------NQDAT 1864

Query: 599  PAPEE 613
            P  EE
Sbjct: 1865 PPGEE 1869


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score =  191 bits (484), Expect = 7e-46
 Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
 Frame = +2

Query: 71   AEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTG 238
            A+WK  R      P  + N   +FT TRQRLDSFT+EEQ++LS+ E +M+ +R+IMH + 
Sbjct: 1699 ADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSA 1758

Query: 239  YNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGK 418
            Y DGDP+  DD+T++++ ++N+HP K  K+G+G+D I V++H  F DSRCF+ VS DG K
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 419  TDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDST 598
             DFSYRK L N+L  KYPD AE FI KYF KP+P    NRDR             N+D+T
Sbjct: 1819 QDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------------NQDAT 1864

Query: 599  PAPEE 613
            P  EE
Sbjct: 1865 PPGEE 1869


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score =  191 bits (484), Expect = 7e-46
 Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
 Frame = +2

Query: 71   AEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTG 238
            A+WK  R      P  + N   +FT TRQRLDSFT+EEQ++LS+ E +M+ +R+IMH + 
Sbjct: 1699 ADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSA 1758

Query: 239  YNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGK 418
            Y DGDP+  DD+T++++ ++N+HP K  K+G+G+D I V++H  F DSRCF+ VS DG K
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 419  TDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDST 598
             DFSYRK L N+L  KYPD AE FI KYF KP+P    NRDR             N+D+T
Sbjct: 1819 QDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------------NQDAT 1864

Query: 599  PAPEE 613
            P  EE
Sbjct: 1865 PPGEE 1869


>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
          Length = 839

 Score =  191 bits (484), Expect = 7e-46
 Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
 Frame = +2

Query: 71   AEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTG 238
            A+WK  R      P  + N   +FT TRQRLDSFT+EEQ++LS+ E +M+ +R+IMH + 
Sbjct: 562  ADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSA 621

Query: 239  YNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGK 418
            Y DGDP+  DD+T++++ ++N+HP K  K+G+G+D I V++H  F DSRCF+ VS DG K
Sbjct: 622  YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 681

Query: 419  TDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDST 598
             DFSYRK L N+L  KYPD AE FI KYF KP+P    NRDR             N+D+T
Sbjct: 682  QDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------------NQDAT 727

Query: 599  PAPEE 613
            P  EE
Sbjct: 728  PPGEE 732


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  189 bits (480), Expect = 2e-45
 Identities = 95/183 (51%), Positives = 124/183 (67%)
 Frame = +2

Query: 65   NDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRIMHQTGYN 244
            N  +WKN R RP   P A G      QRLD +++ EQDVL + E IM++IRRIM Q GYN
Sbjct: 1896 NAGDWKN-RNRP---PRAPG------QRLDIYSSGEQDVLKDIEPIMQSIRRIMQQQGYN 1945

Query: 245  DGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSVDGGKTD 424
            DGDPL  +DQ ++++NV  +HPDK  KMG GID++MVN+H  FQ+SRCFY V  DG   D
Sbjct: 1946 DGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYVVCKDGESKD 2005

Query: 425  FSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWNRDSTPA 604
            FSYRKCL N++  KYPD+AE+F+ KYF+KP+ R   ++   P R EA TP    + +TP 
Sbjct: 2006 FSYRKCLANYISKKYPDLAESFLGKYFRKPRARG--DQTATPGRDEAATPG--EQTATPG 2061

Query: 605  PEE 613
             +E
Sbjct: 2062 RDE 2064


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score =  188 bits (477), Expect = 4e-45
 Identities = 110/249 (44%), Positives = 136/249 (54%), Gaps = 66/249 (26%)
 Frame = +2

Query: 65   NDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 223
            N+ EWKNK+ RPN       DD +A G+FT TRQR+D FT+EEQD+L + E IM++IRRI
Sbjct: 833  NNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRI 892

Query: 224  MHQTG------------------------YNDGDP--------------LPTDDQTY--- 280
            MHQ G                        Y  G P              LP  ++TY   
Sbjct: 893  MHQAGYLSMNLYANIFIVVAGMVKIEYLVYGQGVPTLGDTKHWHSGAVSLPHSERTYKID 952

Query: 281  ------------------IIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVSV 406
                              I+D V N HPDKA KMG GID++MV+RH  F +SRCFY VS 
Sbjct: 953  IGVQYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVST 1012

Query: 407  DGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSWN 586
            DG K DFSYRKCLENF++ KYPD AETFI KYF++  PR+G NR+R     + G     N
Sbjct: 1013 DGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIPEDGG-----N 1065

Query: 587  RDSTPAPEE 613
            R+ +  PEE
Sbjct: 1066 REQSVVPEE 1074